Wall clock time and date at job start Tue Mar 31 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 H 1.09003 * 109.46723 * 179.43743 * 3 2 1 5 5 C 1.50704 * 109.46902 * 299.43212 * 3 2 1 6 6 H 1.07997 * 119.99834 * 120.00897 * 5 3 2 7 7 C 1.37872 * 120.00078 * 300.00475 * 5 3 2 8 8 N 1.31519 * 120.00233 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00048 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46901 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47202 * 119.99766 * 9 7 5 12 12 H 1.48501 * 109.46951 * 239.99677 * 9 7 5 13 13 N 1.46894 * 109.47623 * 59.43492 * 3 2 1 14 14 C 1.46897 * 110.99917 * 88.81132 * 13 3 2 15 15 C 1.50701 * 109.47290 * 175.16238 * 14 13 3 16 16 C 1.37989 * 119.59099 * 94.99753 * 15 14 13 17 17 C 1.39247 * 119.09324 * 180.02562 * 16 15 14 18 18 O 1.35736 * 120.84736 * 179.97438 * 17 16 15 19 19 C 1.42902 * 117.00218 * 185.30900 * 18 17 16 20 20 C 1.54035 * 113.81688 * 252.86012 * 19 18 17 21 21 O 1.44180 * 85.51676 * 223.19223 * 20 19 18 22 22 C 1.44181 * 93.33758 * 24.19700 * 21 20 19 23 23 C 1.39279 * 118.30420 * 0.02562 * 17 16 15 24 24 C 1.37948 * 119.09447 * 359.97438 * 23 17 16 25 25 N 1.31947 * 119.58780 * 274.73186 * 15 14 13 26 26 H 1.09004 * 109.47116 * 175.23366 * 1 2 3 27 27 H 1.08995 * 109.46960 * 55.23186 * 1 2 3 28 28 H 1.08998 * 109.47571 * 295.23209 * 1 2 3 29 29 H 1.08998 * 109.46943 * 119.99740 * 2 1 3 30 30 H 1.08993 * 109.47247 * 239.99322 * 2 1 3 31 31 H 0.96998 * 119.99908 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00079 * 212.76806 * 13 3 2 33 33 H 1.09003 * 109.47811 * 295.16057 * 14 13 3 34 34 H 1.09008 * 109.47378 * 55.16503 * 14 13 3 35 35 H 1.08006 * 120.45308 * 0.02761 * 16 15 14 36 36 H 1.08996 * 112.99517 * 24.84487 * 19 18 17 37 37 H 1.08994 * 113.86597 * 337.34424 * 20 19 18 38 38 H 1.09003 * 113.86251 * 109.04510 * 20 19 18 39 39 H 1.09002 * 113.85958 * 221.66148 * 22 21 20 40 40 H 1.08996 * 113.98312 * 89.96752 * 22 21 20 41 41 H 1.08009 * 120.45367 * 180.02562 * 23 17 16 42 42 H 1.08008 * 119.58805 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0101 5 6 1.5491 2.1488 -1.2375 6 1 0.9274 3.0272 -1.1471 7 6 1.8938 1.6736 -2.4850 8 7 2.6513 0.6042 -2.5951 9 14 1.2859 2.5494 -4.0189 10 1 0.4581 3.7182 -3.6263 11 1 2.4487 3.0131 -4.8178 12 1 0.4682 1.6137 -4.8319 13 7 1.5392 2.1390 1.1925 14 6 2.4594 1.9714 2.3252 15 6 1.9755 2.7941 3.4915 16 6 1.1924 2.2048 4.4628 17 6 0.7506 2.9747 5.5356 18 8 -0.0217 2.4316 6.5107 19 6 -0.5254 3.3204 7.5100 20 6 0.1629 3.1704 8.8798 21 8 -1.1659 3.2657 9.4312 22 6 -1.7937 2.8065 8.2172 23 6 1.1206 4.3167 5.5820 24 6 1.9060 4.8313 4.5714 25 7 2.3104 4.0677 3.5738 26 1 -0.3633 -1.0241 -0.0854 27 1 -0.3633 0.5860 -0.8442 28 1 -0.3634 0.4381 0.9296 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.8935 0.2696 -3.4728 32 1 1.3776 3.1160 0.9994 33 1 2.4951 0.9204 2.6120 34 1 3.4565 2.3031 2.0355 35 1 0.9258 1.1605 4.3919 36 1 -0.6013 4.3511 7.1639 37 1 0.6351 2.2000 9.0322 38 1 0.8102 4.0073 9.1420 39 1 -2.6982 3.3549 7.9538 40 1 -1.9201 1.7252 8.1654 41 1 0.7976 4.9457 6.3985 42 1 2.1972 5.8710 4.5992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:52 Heat of formation + Delta-G solvation = -30.106261 kcal Electronic energy + Delta-G solvation = -22860.897952 eV Core-core repulsion = 19421.010575 eV Total energy + Delta-G solvation = -3439.887377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.08130 -41.03778 -38.91414 -37.93949 -34.85902 -33.14321 -32.52959 -31.57442 -29.95118 -28.53880 -27.66335 -26.32350 -24.97722 -24.49941 -23.28764 -21.53382 -20.94438 -19.57063 -18.38797 -18.10743 -17.45189 -17.02125 -16.96517 -16.84461 -16.39973 -15.96436 -15.69340 -15.38823 -15.24625 -14.93194 -14.48846 -14.10172 -14.06707 -13.94222 -13.64248 -13.48729 -13.06268 -12.83857 -12.67443 -12.56458 -12.42202 -12.26195 -12.00658 -11.88729 -11.60305 -11.29594 -10.83649 -10.79821 -10.54744 -10.46832 -10.08458 -9.89255 -9.04531 -8.08962 -6.21107 0.07858 0.33960 1.41229 1.43661 1.54542 1.90778 2.43148 2.51837 2.74089 3.06329 3.19725 3.31936 3.60606 3.74340 3.87760 3.89058 4.05952 4.15822 4.21755 4.32177 4.48799 4.52392 4.59928 4.65812 4.75738 4.81174 4.83256 4.85474 4.94772 4.95984 5.00642 5.05359 5.31981 5.40295 5.52962 5.58288 5.72394 5.84439 5.90548 6.17298 6.28795 6.44656 6.74807 6.99605 7.09505 7.47228 8.96172 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.002924 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.548853 B = 9572.793677 C = 9884.128486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.222 3.778 4 H -0.031 1.031 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.669 5.669 14 C 0.112 3.888 15 C 0.164 3.836 16 C -0.194 4.194 17 C 0.163 3.837 18 O -0.305 6.305 19 C 0.002 3.998 20 C 0.023 3.977 21 O -0.390 6.390 22 C 0.045 3.955 23 C -0.256 4.256 24 C 0.132 3.868 25 N -0.533 5.533 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.261 0.739 32 H 0.331 0.669 33 H 0.084 0.916 34 H 0.027 0.973 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.172 0.828 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 6.468 22.066 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.113 3.887 4 H -0.014 1.014 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.300 5.300 14 C -0.018 4.018 15 C 0.028 3.972 16 C -0.216 4.216 17 C 0.110 3.890 18 O -0.217 6.217 19 C -0.054 4.054 20 C -0.053 4.053 21 O -0.310 6.310 22 C -0.032 4.032 23 C -0.277 4.277 24 C -0.025 4.025 25 N -0.247 5.247 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.189 0.811 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.748 6.032 21.782 23.321 hybrid contribution 0.339 0.460 -0.857 1.030 sum -5.409 6.492 20.925 22.567 Atomic orbital electron populations 1.21307 0.95989 0.98402 1.00779 1.21318 0.96268 0.97391 0.98762 1.18987 0.90983 0.92275 0.86423 1.01374 1.21475 1.31448 1.11891 0.91454 0.92753 1.25605 0.95197 0.95658 1.01680 1.70018 1.37424 1.23811 1.24206 0.85564 0.78049 0.78729 0.79640 1.19267 1.20857 1.20588 1.60770 1.45918 1.17290 1.05992 1.20795 0.93929 0.98132 0.88972 1.20902 0.92176 0.90323 0.93834 1.21307 1.03272 1.02575 0.94432 1.19312 0.89662 0.92301 0.87749 1.86203 1.62390 1.37624 1.35468 1.26625 0.95496 0.96759 0.86518 1.24753 0.87115 1.04488 0.88987 1.89749 1.19381 1.86623 1.35251 1.24460 0.96325 1.02040 0.80331 1.22446 1.05863 0.94868 1.04494 1.23084 0.91359 1.00466 0.87613 1.67540 1.24851 1.05990 1.26299 0.94745 0.94635 0.93036 0.95764 0.92232 0.92957 0.85248 0.89727 0.95484 0.84034 0.85159 0.88890 0.86267 0.85967 0.88486 0.81064 0.79627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.52 71.98 0.69 -4.06 16 2 C -0.10 -4.81 5.64 30.59 0.17 -4.63 16 3 C 0.22 11.28 2.32 44.17 0.10 11.38 16 4 H -0.03 -1.78 7.66 -2.39 -0.02 -1.80 16 5 C -0.52 -28.68 7.27 25.60 0.19 -28.50 16 6 H 0.05 2.97 7.56 -2.91 -0.02 2.94 16 7 C 0.02 0.99 5.30 84.65 0.45 1.43 16 8 N -0.92 -52.60 11.32 21.45 0.24 -52.36 16 9 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.67 -28.97 5.64 -499.45 -2.82 -31.79 16 14 C 0.11 4.20 5.87 85.56 0.50 4.70 16 15 C 0.16 5.33 6.24 42.48 0.27 5.60 16 16 C -0.19 -5.52 9.68 22.45 0.22 -5.30 16 17 C 0.16 3.75 6.73 22.76 0.15 3.90 16 18 O -0.30 -6.07 10.18 -90.60 -0.92 -6.99 16 19 C 0.00 0.03 3.99 31.29 0.13 0.15 16 20 C 0.02 0.28 9.05 72.27 0.65 0.93 16 21 O -0.39 -6.18 12.45 -148.98 -1.86 -8.04 16 22 C 0.04 0.54 9.05 72.27 0.65 1.20 16 23 C -0.26 -4.79 9.09 22.45 0.20 -4.58 16 24 C 0.13 2.96 11.17 84.60 0.95 3.91 16 25 N -0.53 -16.72 10.27 -184.12 -1.89 -18.61 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.03 1.69 7.07 -2.39 -0.02 1.67 16 28 H 0.05 2.14 7.74 -2.39 -0.02 2.12 16 29 H 0.02 1.07 7.84 -2.39 -0.02 1.06 16 30 H 0.06 3.25 6.06 -2.39 -0.01 3.24 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.33 14.79 8.06 -89.70 -0.72 14.07 16 33 H 0.08 3.03 7.74 -2.39 -0.02 3.01 16 34 H 0.03 1.10 7.93 -2.38 -0.02 1.08 16 35 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.13 1.26 5.98 -2.39 -0.01 1.24 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.17 1.83 6.03 -2.91 -0.02 1.81 16 42 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -65.42 346.48 0.40 -65.01 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.31 Total: 20.84 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 5.32 Total: -13.87 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.47 Total: -102.75 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -2.78 Total: -15.03 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.42 0.40 -65.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.908 kcal (2) G-P(sol) polarization free energy of solvation -65.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds