Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47307 * 2 1 4 4 H 1.08997 * 109.46912 * 54.39733 * 3 2 1 5 5 C 1.50701 * 109.47126 * 174.39363 * 3 2 1 6 6 H 1.08002 * 120.00193 * 119.99727 * 5 3 2 7 7 C 1.37881 * 119.99926 * 300.00093 * 5 3 2 8 8 N 1.31508 * 119.99987 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99637 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47529 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47073 * 119.99929 * 9 7 5 12 12 H 1.48502 * 109.47163 * 239.99872 * 9 7 5 13 13 N 1.46898 * 109.47102 * 294.39403 * 3 2 1 14 14 C 1.46891 * 110.99970 * 152.85739 * 13 3 2 15 15 C 1.53005 * 109.47249 * 175.21565 * 14 13 3 16 16 O 1.42902 * 109.46830 * 65.00318 * 15 14 13 17 17 C 1.35653 * 117.00178 * 180.02562 * 16 15 14 18 18 C 1.38716 * 120.14659 * 359.97438 * 17 16 15 19 19 C 1.38054 * 120.08224 * 180.02562 * 18 17 16 20 20 C 1.38548 * 120.39193 * 0.02562 * 19 18 17 21 21 C 1.37783 * 120.30006 * 359.97438 * 20 19 18 22 22 C 1.39717 * 119.90801 * 359.76274 * 21 20 19 23 23 C 1.47534 * 120.18885 * 180.25504 * 22 21 20 24 24 N 1.34772 * 120.00627 * 0.25910 * 23 22 21 25 25 O 1.21592 * 119.99356 * 180.25671 * 23 22 21 26 26 H 1.08996 * 109.47139 * 299.78577 * 1 2 3 27 27 H 1.09008 * 109.47127 * 59.78278 * 1 2 3 28 28 H 1.08999 * 109.47388 * 179.78169 * 1 2 3 29 29 H 1.08998 * 109.47312 * 240.00025 * 2 1 3 30 30 H 1.09003 * 109.47183 * 120.00305 * 2 1 3 31 31 H 0.97005 * 119.99749 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99761 * 28.90076 * 13 3 2 33 33 H 1.08999 * 109.47333 * 295.21352 * 14 13 3 34 34 H 1.08995 * 109.47427 * 55.21522 * 14 13 3 35 35 H 1.09002 * 109.46972 * 184.99637 * 15 14 13 36 36 H 1.08993 * 109.46946 * 305.00135 * 15 14 13 37 37 H 1.07999 * 119.95712 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.80125 * 179.97438 * 19 18 17 39 39 H 1.08006 * 119.85043 * 179.97438 * 20 19 18 40 40 H 1.08007 * 120.04825 * 180.02562 * 21 20 19 41 41 H 0.97004 * 119.99985 * 359.97438 * 24 23 22 42 42 H 0.96997 * 120.00179 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 0.8356 5 6 3.5406 1.4448 0.1388 6 1 4.1537 1.8865 -0.6328 7 6 4.1309 0.8827 1.2509 8 7 3.3845 0.3443 2.1902 9 14 5.9909 0.8861 1.4232 10 1 6.5966 1.5481 0.2398 11 1 6.3728 1.6260 2.6530 12 1 6.4822 -0.5123 1.5142 13 7 1.6640 2.0949 -1.2613 14 6 1.5340 3.5473 -1.0845 15 6 1.2598 4.2036 -2.4392 16 8 -0.0090 3.7676 -2.9315 17 6 -0.4059 4.2595 -4.1318 18 6 0.4064 5.1449 -4.8249 19 6 0.0009 5.6450 -6.0461 20 6 -1.2174 5.2688 -6.5881 21 6 -2.0368 4.3904 -5.9132 22 6 -1.6364 3.8722 -4.6791 23 6 -2.5064 2.9269 -3.9538 24 7 -3.6889 2.5567 -4.4839 25 8 -2.1565 2.4817 -2.8778 26 1 -0.3633 0.5105 0.8919 27 1 -0.3634 0.5172 -0.8881 28 1 -0.3634 -1.0276 -0.0039 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7998 -0.0508 2.9728 32 1 0.8142 1.6984 -1.6341 33 1 0.7082 3.7581 -0.4049 34 1 2.4585 3.9468 -0.6678 35 1 1.2515 5.2873 -2.3228 36 1 2.0404 3.9198 -3.1449 37 1 1.3569 5.4439 -4.4084 38 1 0.6368 6.3344 -6.5817 39 1 -1.5262 5.6658 -7.5439 40 1 -2.9855 4.0995 -6.3397 41 1 -3.9682 2.9121 -5.3422 42 1 -4.2611 1.9355 -4.0068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = -53.232112 kcal Electronic energy + Delta-G solvation = -23402.696953 eV Core-core repulsion = 19961.806764 eV Total energy + Delta-G solvation = -3440.890189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -40.53374 -38.71149 -37.48182 -36.04962 -33.74501 -32.71087 -31.41012 -31.04801 -29.97090 -28.08292 -25.97300 -24.21829 -23.17122 -22.39607 -21.08044 -20.48814 -19.40443 -18.67056 -17.30188 -16.83930 -16.28743 -15.75871 -15.59887 -15.10676 -14.93344 -14.69796 -14.50991 -14.12599 -13.66527 -13.52314 -13.38016 -12.68945 -12.64265 -12.16488 -11.95714 -11.92110 -11.55978 -11.36302 -10.98851 -10.97391 -10.71144 -10.70752 -10.51030 -9.86694 -9.84657 -9.67316 -9.53197 -9.43418 -9.24095 -8.96530 -8.27630 -8.26156 -7.09675 -5.88709 -3.93046 0.73310 1.27208 2.90178 3.31437 3.35374 3.43055 3.47811 3.48014 3.77267 4.50500 4.54404 4.62095 4.82005 5.02781 5.14398 5.15945 5.32001 5.39125 5.40930 5.59886 5.66420 5.94905 5.98192 6.09756 6.23176 6.30679 6.38323 6.42150 6.50524 6.58748 6.64030 6.76842 7.07064 7.22325 7.27768 7.33098 7.52707 7.62637 7.90531 8.01602 8.34404 8.42067 8.51748 8.90236 9.15218 9.71592 11.16473 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.003763 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.764897 B = 7438.770240 C = 8511.912975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.687 5.687 14 C 0.072 3.928 15 C 0.054 3.946 16 O -0.273 6.273 17 C 0.200 3.800 18 C -0.222 4.222 19 C -0.051 4.051 20 C -0.178 4.178 21 C -0.049 4.049 22 C -0.185 4.185 23 C 0.560 3.440 24 N -0.860 5.860 25 O -0.509 6.509 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.258 0.742 32 H 0.330 0.670 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.395 0.605 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 10.222 -17.652 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.110 3.890 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.319 5.319 14 C -0.058 4.058 15 C -0.021 4.021 16 O -0.184 6.184 17 C 0.150 3.850 18 C -0.241 4.241 19 C -0.069 4.069 20 C -0.196 4.196 21 C -0.068 4.068 22 C -0.189 4.189 23 C 0.345 3.655 24 N -0.425 5.425 25 O -0.383 6.383 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.224 0.776 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.436 9.831 -16.832 22.599 hybrid contribution -0.053 0.122 0.264 0.295 sum -11.489 9.953 -16.568 22.484 Atomic orbital electron populations 1.21874 0.99297 0.99395 1.00222 1.21745 0.91477 1.00233 1.02779 1.19150 0.95246 0.90179 0.84445 0.98024 1.21282 0.91364 1.36313 1.04094 0.92079 1.24975 0.97992 0.95756 0.95932 1.69899 1.34489 1.39613 1.09562 0.86508 0.85962 0.77559 0.77734 1.19850 1.21313 1.21186 1.60724 1.38282 1.01019 1.31905 1.21839 1.00451 0.91810 0.91692 1.23280 0.82920 0.97908 0.97981 1.86380 1.37021 1.64515 1.30436 1.19137 0.91284 0.89386 0.85199 1.21367 1.01929 1.02720 0.98039 1.21130 0.95441 0.96461 0.93916 1.20907 0.95707 1.01673 1.01345 1.21076 0.98757 0.94672 0.92297 1.19288 0.95908 1.05747 0.97965 1.18036 0.81173 0.81012 0.85251 1.43748 1.21697 1.51375 1.25729 1.90943 1.72486 1.54227 1.20665 0.94062 0.93855 0.94694 0.94261 0.88409 0.93221 0.85150 0.95555 0.88900 0.92337 0.90994 0.84545 0.85461 0.85550 0.85375 0.77603 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.76 37.16 0.36 -2.99 16 2 C -0.12 -3.16 5.35 -26.73 -0.14 -3.30 16 3 C 0.22 5.73 2.02 -68.86 -0.14 5.59 16 4 H 0.00 0.06 7.82 -51.93 -0.41 -0.35 16 5 C -0.49 -13.94 8.65 -34.44 -0.30 -14.24 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -26.22 11.29 55.43 0.63 -25.60 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.69 -15.84 6.28 -107.96 -0.68 -16.52 16 14 C 0.07 1.43 5.86 -3.83 -0.02 1.41 16 15 C 0.05 0.87 5.08 37.16 0.19 1.06 16 16 O -0.27 -4.78 7.81 -40.54 -0.32 -5.09 16 17 C 0.20 2.91 6.70 -38.70 -0.26 2.65 16 18 C -0.22 -2.57 9.03 -39.47 -0.36 -2.93 16 19 C -0.05 -0.46 10.03 -39.53 -0.40 -0.86 16 20 C -0.18 -1.46 10.02 -39.63 -0.40 -1.85 16 21 C -0.05 -0.44 9.54 -39.20 -0.37 -0.81 16 22 C -0.19 -2.39 5.89 -104.85 -0.62 -3.01 16 23 C 0.56 7.92 8.04 -12.47 -0.10 7.82 16 24 N -0.86 -7.61 8.82 30.46 0.27 -7.34 16 25 O -0.51 -9.80 16.00 -16.59 -0.27 -10.06 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.95 6.46 -51.92 -0.34 0.61 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.10 2.74 5.94 -51.93 -0.31 2.43 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.33 7.65 6.17 -39.29 -0.24 7.40 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.86 8.01 -51.93 -0.42 1.45 16 35 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 36 H 0.07 1.11 7.66 -51.93 -0.40 0.71 16 37 H 0.14 1.43 6.30 -52.49 -0.33 1.10 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.67 6.41 -52.48 -0.34 0.34 16 41 H 0.40 2.08 6.86 -40.82 -0.28 1.80 16 42 H 0.40 3.18 8.93 -40.82 -0.36 2.81 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -34.24 345.33 -8.72 -42.96 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.90 Total: 9.67 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.65 Total: -10.05 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.22 Total: -49.46 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.58 Total: -15.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.24 -8.72 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.269 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds