Wall clock time and date at job start Tue Mar 31 2020 06:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47307 * 2 1 4 4 H 1.08997 * 109.46912 * 54.39733 * 3 2 1 5 5 C 1.50701 * 109.47126 * 174.39363 * 3 2 1 6 6 H 1.08002 * 120.00193 * 119.99727 * 5 3 2 7 7 C 1.37881 * 119.99926 * 300.00093 * 5 3 2 8 8 N 1.31508 * 119.99987 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99637 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47529 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47073 * 119.99929 * 9 7 5 12 12 H 1.48502 * 109.47163 * 239.99872 * 9 7 5 13 13 N 1.46898 * 109.47102 * 294.39403 * 3 2 1 14 14 C 1.46891 * 110.99970 * 152.85739 * 13 3 2 15 15 C 1.53005 * 109.47249 * 175.21565 * 14 13 3 16 16 O 1.42902 * 109.46830 * 65.00318 * 15 14 13 17 17 C 1.35653 * 117.00178 * 180.02562 * 16 15 14 18 18 C 1.38716 * 120.14659 * 359.97438 * 17 16 15 19 19 C 1.38054 * 120.08224 * 180.02562 * 18 17 16 20 20 C 1.38548 * 120.39193 * 0.02562 * 19 18 17 21 21 C 1.37783 * 120.30006 * 359.97438 * 20 19 18 22 22 C 1.39717 * 119.90801 * 359.76274 * 21 20 19 23 23 C 1.47534 * 120.18885 * 180.25504 * 22 21 20 24 24 N 1.34772 * 120.00627 * 0.25910 * 23 22 21 25 25 O 1.21592 * 119.99356 * 180.25671 * 23 22 21 26 26 H 1.08996 * 109.47139 * 299.78577 * 1 2 3 27 27 H 1.09008 * 109.47127 * 59.78278 * 1 2 3 28 28 H 1.08999 * 109.47388 * 179.78169 * 1 2 3 29 29 H 1.08998 * 109.47312 * 240.00025 * 2 1 3 30 30 H 1.09003 * 109.47183 * 120.00305 * 2 1 3 31 31 H 0.97005 * 119.99749 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99761 * 28.90076 * 13 3 2 33 33 H 1.08999 * 109.47333 * 295.21352 * 14 13 3 34 34 H 1.08995 * 109.47427 * 55.21522 * 14 13 3 35 35 H 1.09002 * 109.46972 * 184.99637 * 15 14 13 36 36 H 1.08993 * 109.46946 * 305.00135 * 15 14 13 37 37 H 1.07999 * 119.95712 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.80125 * 179.97438 * 19 18 17 39 39 H 1.08006 * 119.85043 * 179.97438 * 20 19 18 40 40 H 1.08007 * 120.04825 * 180.02562 * 21 20 19 41 41 H 0.97004 * 119.99985 * 359.97438 * 24 23 22 42 42 H 0.96997 * 120.00179 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 0.8356 5 6 3.5406 1.4448 0.1388 6 1 4.1537 1.8865 -0.6328 7 6 4.1309 0.8827 1.2509 8 7 3.3845 0.3443 2.1902 9 14 5.9909 0.8861 1.4232 10 1 6.5966 1.5481 0.2398 11 1 6.3728 1.6260 2.6530 12 1 6.4822 -0.5123 1.5142 13 7 1.6640 2.0949 -1.2613 14 6 1.5340 3.5473 -1.0845 15 6 1.2598 4.2036 -2.4392 16 8 -0.0090 3.7676 -2.9315 17 6 -0.4059 4.2595 -4.1318 18 6 0.4064 5.1449 -4.8249 19 6 0.0009 5.6450 -6.0461 20 6 -1.2174 5.2688 -6.5881 21 6 -2.0368 4.3904 -5.9132 22 6 -1.6364 3.8722 -4.6791 23 6 -2.5064 2.9269 -3.9538 24 7 -3.6889 2.5567 -4.4839 25 8 -2.1565 2.4817 -2.8778 26 1 -0.3633 0.5105 0.8919 27 1 -0.3634 0.5172 -0.8881 28 1 -0.3634 -1.0276 -0.0039 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7998 -0.0508 2.9728 32 1 0.8142 1.6984 -1.6341 33 1 0.7082 3.7581 -0.4049 34 1 2.4585 3.9468 -0.6678 35 1 1.2515 5.2873 -2.3228 36 1 2.0404 3.9198 -3.1449 37 1 1.3569 5.4439 -4.4084 38 1 0.6368 6.3344 -6.5817 39 1 -1.5262 5.6658 -7.5439 40 1 -2.9855 4.0995 -6.3397 41 1 -3.9682 2.9121 -5.3422 42 1 -4.2611 1.9355 -4.0068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:26 Heat of formation + Delta-G solvation = -78.319431 kcal Electronic energy + Delta-G solvation = -23403.784821 eV Core-core repulsion = 19961.806764 eV Total energy + Delta-G solvation = -3441.978057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -41.48844 -39.82582 -38.57287 -37.81609 -34.76573 -34.57583 -33.26154 -31.93982 -30.97043 -29.68451 -27.92781 -25.12823 -24.82690 -23.83581 -22.24365 -21.59174 -21.38147 -19.60874 -18.42933 -18.19994 -17.76155 -17.17135 -16.69476 -16.57671 -16.13762 -15.93696 -15.75660 -15.44480 -15.39923 -14.79285 -14.44098 -14.39385 -14.05589 -13.75806 -13.30849 -13.17721 -12.97834 -12.91288 -12.74400 -12.56596 -12.42556 -12.10151 -11.99090 -11.87068 -11.57602 -11.37840 -11.04332 -10.92344 -10.62054 -10.44208 -10.01210 -9.17797 -9.04759 -8.06208 -6.19504 -0.08310 0.47110 1.41602 1.42848 1.55669 1.97396 2.25187 2.44604 2.64144 2.91960 3.18099 3.56384 3.81646 3.85485 4.02910 4.19449 4.22607 4.30482 4.42286 4.43340 4.49426 4.52073 4.53796 4.67235 4.83759 4.87257 4.89726 5.07877 5.18585 5.22872 5.31531 5.37257 5.50919 5.54358 5.73058 5.82957 5.85865 5.95910 6.33694 6.40520 6.48450 6.59469 6.90997 6.94317 7.44463 7.49493 8.97927 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.003763 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.764897 B = 7438.770240 C = 8511.912975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.222 3.778 4 H -0.034 1.034 5 C -0.511 4.511 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.922 5.922 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.684 5.684 14 C 0.071 3.929 15 C 0.067 3.933 16 O -0.307 6.307 17 C 0.159 3.841 18 C -0.233 4.233 19 C -0.047 4.047 20 C -0.167 4.167 21 C -0.041 4.041 22 C -0.209 4.209 23 C 0.552 3.448 24 N -0.834 5.834 25 O -0.575 6.575 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.012 0.988 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.415 0.585 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.793 11.566 -20.819 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.114 3.886 4 H -0.017 1.017 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.008 4.008 16 O -0.219 6.219 17 C 0.110 3.890 18 C -0.251 4.251 19 C -0.065 4.065 20 C -0.185 4.185 21 C -0.059 4.059 22 C -0.213 4.213 23 C 0.339 3.661 24 N -0.400 5.400 25 O -0.455 6.455 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.030 0.970 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.248 0.752 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.854 11.195 -20.072 25.860 hybrid contribution -0.061 -0.225 1.099 1.123 sum -11.915 10.970 -18.973 24.946 Atomic orbital electron populations 1.21707 0.96903 1.00862 0.99864 1.21590 0.93572 0.99315 1.01184 1.18969 0.94489 0.90544 0.84606 1.01658 1.21489 0.92266 1.36847 1.04379 0.92729 1.25779 1.02793 0.95147 0.95429 1.70034 1.36412 1.39873 1.09926 0.85428 0.80078 0.77703 0.77899 1.19196 1.20627 1.20635 1.60682 1.38180 1.02766 1.29958 1.21856 0.99598 0.90096 0.94296 1.23018 0.83330 0.98893 0.95510 1.86312 1.37045 1.65976 1.32549 1.19583 0.92935 0.91475 0.84962 1.21535 1.01925 1.02575 0.99102 1.21585 0.96201 0.95951 0.92746 1.21434 0.94691 1.00077 1.02274 1.21521 1.00263 0.93693 0.90408 1.19506 0.95637 1.06550 0.99613 1.18439 0.82233 0.80828 0.84637 1.43516 1.19978 1.50308 1.26192 1.90905 1.74208 1.56843 1.23533 0.94796 0.93749 0.92241 0.94644 0.90913 0.93035 0.85342 0.97025 0.89529 0.89458 0.90696 0.84122 0.82302 0.81604 0.81518 0.75213 0.75956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.23 9.76 71.98 0.70 -5.53 16 2 C -0.12 -6.25 5.35 30.59 0.16 -6.09 16 3 C 0.22 12.30 2.02 44.17 0.09 12.39 16 4 H -0.03 -2.10 7.82 -2.39 -0.02 -2.11 16 5 C -0.51 -29.88 8.65 25.60 0.22 -29.66 16 6 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.37 5.29 84.66 0.45 0.81 16 8 N -0.92 -55.36 11.29 21.45 0.24 -55.11 16 9 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.68 -33.11 6.28 -495.46 -3.11 -36.22 16 14 C 0.07 2.99 5.86 86.31 0.51 3.50 16 15 C 0.07 2.23 5.08 71.98 0.37 2.59 16 16 O -0.31 -11.21 7.81 -68.76 -0.54 -11.75 16 17 C 0.16 4.63 6.70 22.84 0.15 4.78 16 18 C -0.23 -5.08 9.03 22.34 0.20 -4.87 16 19 C -0.05 -0.68 10.03 22.30 0.22 -0.45 16 20 C -0.17 -1.94 10.02 22.24 0.22 -1.72 16 21 C -0.04 -0.58 9.54 22.52 0.21 -0.37 16 22 C -0.21 -5.23 5.89 -20.01 -0.12 -5.35 16 23 C 0.55 15.71 8.04 86.70 0.70 16.40 16 24 N -0.83 -13.60 8.82 -175.82 -1.55 -15.15 16 25 O -0.58 -23.33 16.00 16.91 0.27 -23.06 16 26 H 0.03 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.04 2.02 6.46 -2.38 -0.02 2.00 16 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 4.23 5.94 -2.39 -0.01 4.22 16 31 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 32 H 0.33 16.04 6.17 -89.69 -0.55 15.48 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 3.66 8.01 -2.39 -0.02 3.64 16 35 H 0.09 2.30 7.66 -2.39 -0.02 2.28 16 36 H 0.07 2.37 7.66 -2.39 -0.02 2.35 16 37 H 0.14 2.79 6.30 -2.91 -0.02 2.77 16 38 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 40 H 0.17 0.92 6.41 -2.91 -0.02 0.91 16 41 H 0.42 3.13 6.86 -92.71 -0.64 2.49 16 42 H 0.41 6.04 8.93 -92.71 -0.83 5.21 16 Total: -1.00 -79.26 345.33 0.48 -78.78 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.96 Total: 28.68 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.09 Total: -13.57 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -4.42 Total: -106.48 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.27 Total: -34.81 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -79.26 0.48 -78.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.462 kcal (2) G-P(sol) polarization free energy of solvation -79.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds