Wall clock time and date at job start Tue Mar 31 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46917 * 2 1 4 4 C 1.34229 * 116.99534 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00239 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99880 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.47132 * 300.00854 * 6 4 3 8 8 N 1.46900 * 109.47529 * 180.02562 * 6 4 3 9 9 C 1.46897 * 111.00023 * 150.91331 * 8 6 4 10 10 H 1.09001 * 109.47800 * 329.01607 * 9 8 6 11 11 C 1.50711 * 109.46787 * 89.01415 * 9 8 6 12 12 H 1.08003 * 119.99673 * 359.97438 * 11 9 8 13 13 C 1.37875 * 119.99917 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00188 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99755 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46754 * 90.00138 * 15 13 11 17 17 H 1.48499 * 109.47204 * 209.99748 * 15 13 11 18 18 H 1.48494 * 109.47109 * 329.99979 * 15 13 11 19 19 C 1.53000 * 109.47186 * 209.00950 * 9 8 6 20 20 C 1.53004 * 109.46685 * 65.66767 * 19 9 8 21 21 C 1.50707 * 109.47017 * 60.00356 * 6 4 3 22 22 C 1.38226 * 119.61781 * 274.73148 * 21 6 4 23 23 C 1.38622 * 119.16384 * 179.75288 * 22 21 6 24 24 C 1.38679 * 118.41800 * 0.50960 * 23 22 21 25 25 C 1.38178 * 119.16133 * 359.73110 * 24 23 22 26 26 N 1.31850 * 119.61927 * 95.00260 * 21 6 4 27 27 H 1.08997 * 109.47330 * 60.00080 * 1 2 3 28 28 H 1.09004 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47060 * 299.99836 * 1 2 3 30 30 H 1.09003 * 109.47060 * 240.00164 * 2 1 3 31 31 H 1.08997 * 109.47330 * 119.99920 * 2 1 3 32 32 H 1.00903 * 110.99258 * 26.96531 * 8 6 4 33 33 H 0.96998 * 119.99845 * 180.02562 * 14 13 11 34 34 H 1.09007 * 109.46717 * 185.66291 * 19 9 8 35 35 H 1.08992 * 109.47290 * 305.66436 * 19 9 8 36 36 H 1.09000 * 109.46887 * 294.26217 * 20 19 9 37 37 H 1.08998 * 109.47067 * 54.27121 * 20 19 9 38 38 H 1.09001 * 109.46451 * 174.27083 * 20 19 9 39 39 H 1.08007 * 120.41846 * 359.97438 * 22 21 6 40 40 H 1.08001 * 120.79789 * 180.21679 * 23 22 21 41 41 H 1.07998 * 120.41751 * 179.71288 * 24 23 22 42 42 H 1.08001 * 119.61801 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5851 3.4691 -0.8904 8 7 5.3877 2.8606 0.0001 9 6 5.9761 4.0296 -0.6670 10 1 5.3014 4.3803 -1.4480 11 6 6.1910 5.1284 0.3419 12 1 5.9173 4.9738 1.3752 13 6 6.7369 6.3309 -0.0543 14 7 7.0696 6.5193 -1.3126 15 14 7.0025 7.6930 1.1961 16 1 8.3554 7.5594 1.7936 17 1 6.8865 9.0119 0.5236 18 1 5.9768 7.5906 2.2651 19 6 7.3181 3.6396 -1.2898 20 6 7.0842 2.6263 -2.4121 21 6 3.4557 3.6738 1.2299 22 6 2.2358 4.3237 1.2166 23 6 1.8150 4.9939 2.3548 24 6 2.6455 4.9943 3.4654 25 6 3.8537 4.3268 3.4029 26 7 4.2196 3.6953 2.3043 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7048 2.0030 -0.4267 33 1 7.4540 7.3652 -1.5911 34 1 7.8014 4.5277 -1.6970 35 1 7.9574 3.1956 -0.5268 36 1 6.6950 1.6998 -1.9897 37 1 6.3648 3.0317 -3.1235 38 1 8.0262 2.4254 -2.9223 39 1 1.6167 4.3066 0.3318 40 1 0.8652 5.5075 2.3747 41 1 2.3518 5.5101 4.3676 42 1 4.5061 4.3220 4.2636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:37 Heat of formation + Delta-G solvation = -42.301462 kcal Electronic energy + Delta-G solvation = -24353.958537 eV Core-core repulsion = 20913.542336 eV Total energy + Delta-G solvation = -3440.416201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54779 -39.43486 -36.93193 -35.87148 -33.22437 -31.91495 -31.81671 -31.43013 -29.98156 -27.36137 -25.55026 -23.44702 -23.05236 -22.62436 -22.08747 -20.27253 -19.63260 -17.52989 -16.95367 -16.46133 -16.17418 -15.99383 -15.66595 -15.09358 -14.63015 -14.23051 -13.89915 -13.63211 -13.33621 -12.97071 -12.92420 -12.83282 -12.66361 -12.33616 -12.09984 -11.88857 -11.73032 -11.60522 -11.22459 -11.12130 -10.83126 -10.56772 -10.50244 -10.40203 -9.90064 -9.71712 -9.62564 -9.34679 -9.04381 -8.66597 -8.50502 -8.26386 -7.30944 -5.90309 -3.91217 1.51724 1.80984 2.42276 2.78384 3.35899 3.42056 3.46283 4.30665 4.50301 4.69485 4.84193 4.86750 4.93674 5.04295 5.18333 5.22947 5.31950 5.40788 5.50844 5.60730 5.66191 5.68269 5.74846 5.84650 5.97055 6.14359 6.20581 6.21639 6.44848 6.50504 6.51868 6.55854 6.87455 7.03319 7.11867 7.18261 7.41143 7.80597 7.92313 8.04269 8.21038 8.42021 8.68249 8.75339 9.22196 9.72718 11.15886 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.006535 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.428681 B = 4283.554278 C = 5771.245247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.467 3.533 5 O -0.495 6.495 6 C 0.156 3.844 7 H 0.091 0.909 8 N -0.649 5.649 9 C 0.220 3.780 10 H 0.004 0.996 11 C -0.484 4.484 12 H 0.077 0.923 13 C 0.052 3.948 14 N -0.901 5.901 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.276 1.276 19 C -0.127 4.127 20 C -0.153 4.153 21 C 0.160 3.840 22 C -0.159 4.159 23 C -0.084 4.084 24 C -0.181 4.181 25 C 0.093 3.907 26 N -0.417 5.417 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.337 0.663 33 H 0.257 0.743 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -7.567 3.286 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.381 6.381 6 C 0.043 3.957 7 H 0.108 0.892 8 N -0.286 5.286 9 C 0.113 3.887 10 H 0.021 0.979 11 C -0.522 4.522 12 H 0.095 0.905 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.217 1.217 18 H -0.201 1.201 19 C -0.165 4.165 20 C -0.210 4.210 21 C 0.021 3.979 22 C -0.179 4.179 23 C -0.110 4.110 24 C -0.201 4.201 25 C -0.065 4.065 26 N -0.124 5.124 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.082 -7.939 3.766 14.939 hybrid contribution -0.719 1.074 -0.303 1.328 sum -12.801 -6.865 3.463 14.932 Atomic orbital electron populations 1.21788 0.92783 1.02693 1.03518 1.22985 0.95228 0.80718 1.02465 1.86533 1.24693 1.31911 1.84168 1.23933 0.80421 0.92842 0.71929 1.90621 1.60225 1.42505 1.44756 1.19970 0.92783 0.87058 0.95912 0.89224 1.60685 0.99473 1.07086 1.61355 1.19376 0.91099 0.86180 0.92030 0.97854 1.21462 1.38694 0.95880 0.96206 0.90452 1.24950 0.96226 0.98451 0.95088 1.69872 1.44387 1.24739 1.15145 0.86607 0.78528 0.81366 0.81576 1.20828 1.21651 1.20123 1.21801 1.00100 0.99109 0.95521 1.21910 1.00041 0.99289 0.99773 1.20492 0.89517 0.94709 0.93227 1.21833 0.97563 0.99148 0.99352 1.21357 0.99369 0.97412 0.92853 1.22070 0.96736 1.01868 0.99467 1.22780 0.94002 0.93629 0.96057 1.67520 1.30847 1.15796 0.98272 0.91476 0.90478 0.91501 0.91357 0.91397 0.84106 0.93291 0.87937 0.93732 0.94473 0.93948 0.94224 0.85173 0.85456 0.85622 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.36 10.08 -39.25 -0.40 -5.76 16 4 C 0.47 8.41 7.27 36.01 0.26 8.67 16 5 O -0.50 -9.80 15.32 -18.75 -0.29 -10.09 16 6 C 0.16 3.05 2.79 -70.01 -0.20 2.86 16 7 H 0.09 1.71 7.27 -51.93 -0.38 1.33 16 8 N -0.65 -14.49 5.62 -103.39 -0.58 -15.07 16 9 C 0.22 5.45 2.03 -68.86 -0.14 5.31 16 10 H 0.00 0.11 7.31 -51.93 -0.38 -0.27 16 11 C -0.48 -13.21 8.17 -34.44 -0.28 -13.50 16 12 H 0.08 2.17 5.96 -52.48 -0.31 1.85 16 13 C 0.05 1.45 5.29 -17.82 -0.09 1.35 16 14 N -0.90 -25.55 11.29 55.43 0.63 -24.93 16 15 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 C -0.13 -3.02 5.33 -26.73 -0.14 -3.17 16 20 C -0.15 -3.04 9.66 37.16 0.36 -2.69 16 21 C 0.16 3.11 5.12 -82.59 -0.42 2.69 16 22 C -0.16 -2.59 9.70 -39.44 -0.38 -2.97 16 23 C -0.08 -1.20 10.18 -39.28 -0.40 -1.60 16 24 C -0.18 -2.65 10.11 -39.44 -0.40 -3.05 16 25 C 0.09 1.61 11.18 -17.55 -0.20 1.42 16 26 N -0.42 -8.60 8.00 -9.47 -0.08 -8.68 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.34 7.33 5.15 -39.29 -0.20 7.13 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.10 2.72 5.94 -51.93 -0.31 2.41 16 35 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.69 6.67 -51.93 -0.35 0.35 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -31.48 348.45 -8.04 -39.52 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.13 Total: 7.50 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.42 Total: -4.62 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.03 Total: -48.67 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.68 Total: -15.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.48 -8.04 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.778 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds