Wall clock time and date at job start Tue Mar 31 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.47114 * 2 1 4 4 C 1.34229 * 117.00158 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00320 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.47162 * 300.00310 * 6 4 3 8 8 N 1.46894 * 109.47362 * 180.02562 * 6 4 3 9 9 C 1.46897 * 111.00210 * 155.23953 * 8 6 4 10 10 H 1.09000 * 109.47225 * 37.23179 * 9 8 6 11 11 C 1.50697 * 109.47196 * 277.23290 * 9 8 6 12 12 H 1.08004 * 120.00240 * 359.97438 * 11 9 8 13 13 C 1.37880 * 120.00305 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00248 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 119.99753 * 0.02562 * 13 11 9 16 16 H 1.48498 * 109.47377 * 89.99751 * 15 13 11 17 17 H 1.48502 * 109.47104 * 209.99718 * 15 13 11 18 18 H 1.48494 * 109.47163 * 329.99700 * 15 13 11 19 19 C 1.53001 * 109.47544 * 157.23230 * 9 8 6 20 20 C 1.53006 * 109.46854 * 294.44979 * 19 9 8 21 21 C 1.50700 * 109.46801 * 60.00129 * 6 4 3 22 22 C 1.38227 * 119.61862 * 273.81451 * 21 6 4 23 23 C 1.38630 * 119.15866 * 179.75602 * 22 21 6 24 24 C 1.38669 * 118.42270 * 0.50936 * 23 22 21 25 25 C 1.38191 * 119.16205 * 359.73129 * 24 23 22 26 26 N 1.31853 * 119.61924 * 94.09103 * 21 6 4 27 27 H 1.08996 * 109.47165 * 60.00516 * 1 2 3 28 28 H 1.09007 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47394 * 300.00318 * 1 2 3 30 30 H 1.08996 * 109.47394 * 239.99682 * 2 1 3 31 31 H 1.09008 * 109.46713 * 119.99486 * 2 1 3 32 32 H 1.00901 * 111.00278 * 279.19055 * 8 6 4 33 33 H 0.96998 * 120.00357 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.47254 * 174.44856 * 19 9 8 35 35 H 1.08997 * 109.47011 * 54.44199 * 19 9 8 36 36 H 1.08996 * 109.47212 * 297.70855 * 20 19 9 37 37 H 1.09003 * 109.46958 * 177.71228 * 20 19 9 38 38 H 1.09000 * 109.46835 * 57.71358 * 20 19 9 39 39 H 1.07996 * 120.41886 * 359.97438 * 22 21 6 40 40 H 1.08004 * 120.78983 * 180.21693 * 23 22 21 41 41 H 1.08001 * 120.42158 * 179.70931 * 24 23 22 42 42 H 1.08000 * 119.61546 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8905 8 7 5.3877 2.8605 0.0001 9 6 5.9786 4.0763 -0.5747 10 1 5.3895 4.9432 -0.2754 11 6 5.9862 3.9689 -2.0778 12 1 5.5918 3.0856 -2.5581 13 6 6.4965 4.9983 -2.8401 14 7 6.5036 4.9043 -4.1518 15 14 7.1793 6.5258 -2.0094 16 1 8.6277 6.3379 -1.7410 17 1 6.9889 7.6998 -2.8987 18 1 6.4640 6.7541 -0.7283 19 6 7.4134 4.2351 -0.0676 20 6 7.3961 4.4826 1.4422 21 6 3.4557 3.6738 1.2298 22 6 2.2445 4.3396 1.2103 23 6 1.8236 5.0096 2.3486 24 6 2.6452 4.9938 3.4655 25 6 3.8452 4.3108 3.4091 26 7 4.2114 3.6801 2.3103 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.7409 2.6917 0.9301 33 1 6.8630 5.6283 -4.6880 34 1 7.8846 5.0804 -0.5690 35 1 7.9765 3.3264 -0.2803 36 1 6.8679 5.4126 1.6519 37 1 8.4196 4.5552 1.8102 38 1 6.8888 3.6562 1.9401 39 1 1.6323 4.3349 0.3206 40 1 0.8804 5.5355 2.3635 41 1 2.3513 5.5091 4.3680 42 1 4.4910 4.2941 4.2746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:41 Heat of formation + Delta-G solvation = -38.757236 kcal Electronic energy + Delta-G solvation = -24337.635581 eV Core-core repulsion = 20897.373070 eV Total energy + Delta-G solvation = -3440.262511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.60403 -39.64266 -36.93594 -35.95835 -33.44109 -32.34358 -31.96063 -31.54184 -30.29018 -27.63769 -26.07143 -23.44018 -23.39247 -22.64651 -22.12838 -20.36261 -19.82123 -17.58786 -17.01717 -16.63094 -16.34392 -16.06982 -16.04437 -15.52290 -14.81458 -14.29945 -13.97352 -13.87792 -13.69150 -13.24558 -13.10585 -12.91585 -12.75865 -12.41911 -12.24752 -11.96391 -11.86997 -11.68507 -11.49752 -11.44523 -10.98677 -10.56879 -10.35197 -10.33225 -10.22819 -9.92849 -9.80870 -9.45775 -9.40464 -9.15723 -8.86471 -8.52448 -7.50763 -6.04129 -4.01884 1.10290 1.33185 2.65494 2.87269 3.27083 3.37358 3.38769 3.86644 4.24529 4.40999 4.75027 4.84474 4.94365 4.95288 5.05067 5.07709 5.19682 5.23950 5.29912 5.38888 5.55363 5.71761 5.75205 5.77899 5.79425 5.91725 5.92806 5.95545 6.08274 6.14198 6.19277 6.60050 6.65422 6.68193 6.71475 6.76338 6.87816 7.18175 7.68912 7.83055 8.03035 8.18074 8.30458 8.74840 9.08014 9.58490 11.08954 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.006275 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.651881 B = 4460.933944 C = 5500.734472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.473 3.527 5 O -0.479 6.479 6 C 0.157 3.843 7 H 0.138 0.862 8 N -0.644 5.644 9 C 0.196 3.804 10 H 0.001 0.999 11 C -0.503 4.503 12 H 0.082 0.918 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.297 1.297 18 H -0.268 1.268 19 C -0.132 4.132 20 C -0.155 4.155 21 C 0.108 3.892 22 C -0.147 4.147 23 C -0.076 4.076 24 C -0.178 4.178 25 C 0.100 3.900 26 N -0.472 5.472 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.347 0.653 33 H 0.263 0.737 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -1.798 14.495 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.313 3.687 5 O -0.363 6.363 6 C 0.043 3.957 7 H 0.156 0.844 8 N -0.278 5.278 9 C 0.088 3.912 10 H 0.018 0.982 11 C -0.541 4.541 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.711 3.289 16 H -0.205 1.205 17 H -0.225 1.225 18 H -0.193 1.193 19 C -0.170 4.170 20 C -0.212 4.212 21 C -0.032 4.032 22 C -0.168 4.168 23 C -0.103 4.103 24 C -0.198 4.198 25 C -0.057 4.057 26 N -0.181 5.181 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.169 0.831 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.996 -2.852 13.712 17.806 hybrid contribution -0.452 1.917 1.064 2.239 sum -11.448 -0.935 14.776 18.715 Atomic orbital electron populations 1.21781 0.92981 1.02597 1.03356 1.22927 0.94996 0.80921 1.02406 1.86495 1.25138 1.31765 1.84722 1.23570 0.80012 0.92487 0.72655 1.90629 1.60165 1.42225 1.43256 1.19997 0.92323 0.88007 0.95378 0.84428 1.60174 0.99473 1.40165 1.27955 1.19610 0.90152 0.85831 0.95635 0.98165 1.21076 1.40362 1.04605 0.88070 0.89965 1.24930 0.95628 0.97898 0.94689 1.69883 1.46525 1.33014 1.04234 0.86962 0.79688 0.83026 0.79198 1.20458 1.22509 1.19346 1.22042 0.99916 1.01510 0.93487 1.21900 1.00183 1.01152 0.97990 1.21860 0.91257 0.95689 0.94422 1.22017 0.97097 0.97912 0.99740 1.21557 0.99364 0.96710 0.92630 1.22102 0.96423 1.01663 0.99607 1.22669 0.94490 0.92989 0.95547 1.67201 1.33507 1.18069 0.99370 0.91405 0.90576 0.91782 0.91219 0.91730 0.83057 0.92685 0.92857 0.91181 0.94079 0.93919 0.92024 0.84197 0.84874 0.85045 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -5.73 10.12 -39.26 -0.40 -6.13 16 4 C 0.47 8.95 7.31 36.01 0.26 9.22 16 5 O -0.48 -10.34 16.18 -18.75 -0.30 -10.65 16 6 C 0.16 3.03 2.58 -70.02 -0.18 2.85 16 7 H 0.14 2.75 7.51 -51.93 -0.39 2.36 16 8 N -0.64 -14.11 5.49 -103.40 -0.57 -14.67 16 9 C 0.20 4.67 1.45 -68.87 -0.10 4.57 16 10 H 0.00 0.02 6.71 -51.93 -0.35 -0.33 16 11 C -0.50 -14.17 8.95 -34.44 -0.31 -14.48 16 12 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 13 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 14 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 15 Si 0.88 21.98 24.41 -169.99 -4.15 17.83 16 16 H -0.28 -6.79 6.83 56.52 0.39 -6.41 16 17 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 19 C -0.13 -2.94 5.03 -26.73 -0.13 -3.08 16 20 C -0.15 -2.86 9.78 37.16 0.36 -2.50 16 21 C 0.11 1.80 5.44 -82.59 -0.45 1.35 16 22 C -0.15 -2.04 9.74 -39.44 -0.38 -2.42 16 23 C -0.08 -0.86 10.18 -39.28 -0.40 -1.26 16 24 C -0.18 -1.92 10.11 -39.44 -0.40 -2.32 16 25 C 0.10 1.28 11.18 -17.55 -0.20 1.08 16 26 N -0.47 -7.65 8.69 -9.47 -0.08 -7.73 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 31 H 0.06 0.81 8.13 -51.92 -0.42 0.39 16 32 H 0.35 7.24 5.19 -39.29 -0.20 7.04 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.09 6.18 -51.93 -0.32 0.77 16 39 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -33.33 345.51 -7.04 -40.37 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.11 Total: 7.47 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.41 Total: -5.03 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.12 Total: -49.08 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.70 Total: -16.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.33 -7.04 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.614 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds