Wall clock time and date at job start Tue Mar 31 2020 06:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.47114 * 2 1 4 4 C 1.34229 * 117.00158 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00320 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.47162 * 300.00310 * 6 4 3 8 8 N 1.46894 * 109.47362 * 180.02562 * 6 4 3 9 9 C 1.46897 * 111.00210 * 155.23953 * 8 6 4 10 10 H 1.09000 * 109.47225 * 37.23179 * 9 8 6 11 11 C 1.50697 * 109.47196 * 277.23290 * 9 8 6 12 12 H 1.08004 * 120.00240 * 359.97438 * 11 9 8 13 13 C 1.37880 * 120.00305 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00248 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 119.99753 * 0.02562 * 13 11 9 16 16 H 1.48498 * 109.47377 * 89.99751 * 15 13 11 17 17 H 1.48502 * 109.47104 * 209.99718 * 15 13 11 18 18 H 1.48494 * 109.47163 * 329.99700 * 15 13 11 19 19 C 1.53001 * 109.47544 * 157.23230 * 9 8 6 20 20 C 1.53006 * 109.46854 * 294.44979 * 19 9 8 21 21 C 1.50700 * 109.46801 * 60.00129 * 6 4 3 22 22 C 1.38227 * 119.61862 * 273.81451 * 21 6 4 23 23 C 1.38630 * 119.15866 * 179.75602 * 22 21 6 24 24 C 1.38669 * 118.42270 * 0.50936 * 23 22 21 25 25 C 1.38191 * 119.16205 * 359.73129 * 24 23 22 26 26 N 1.31853 * 119.61924 * 94.09103 * 21 6 4 27 27 H 1.08996 * 109.47165 * 60.00516 * 1 2 3 28 28 H 1.09007 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47394 * 300.00318 * 1 2 3 30 30 H 1.08996 * 109.47394 * 239.99682 * 2 1 3 31 31 H 1.09008 * 109.46713 * 119.99486 * 2 1 3 32 32 H 1.00901 * 111.00278 * 279.19055 * 8 6 4 33 33 H 0.96998 * 120.00357 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.47254 * 174.44856 * 19 9 8 35 35 H 1.08997 * 109.47011 * 54.44199 * 19 9 8 36 36 H 1.08996 * 109.47212 * 297.70855 * 20 19 9 37 37 H 1.09003 * 109.46958 * 177.71228 * 20 19 9 38 38 H 1.09000 * 109.46835 * 57.71358 * 20 19 9 39 39 H 1.07996 * 120.41886 * 359.97438 * 22 21 6 40 40 H 1.08004 * 120.78983 * 180.21693 * 23 22 21 41 41 H 1.08001 * 120.42158 * 179.70931 * 24 23 22 42 42 H 1.08000 * 119.61546 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8905 8 7 5.3877 2.8605 0.0001 9 6 5.9786 4.0763 -0.5747 10 1 5.3895 4.9432 -0.2754 11 6 5.9862 3.9689 -2.0778 12 1 5.5918 3.0856 -2.5581 13 6 6.4965 4.9983 -2.8401 14 7 6.5036 4.9043 -4.1518 15 14 7.1793 6.5258 -2.0094 16 1 8.6277 6.3379 -1.7410 17 1 6.9889 7.6998 -2.8987 18 1 6.4640 6.7541 -0.7283 19 6 7.4134 4.2351 -0.0676 20 6 7.3961 4.4826 1.4422 21 6 3.4557 3.6738 1.2298 22 6 2.2445 4.3396 1.2103 23 6 1.8236 5.0096 2.3486 24 6 2.6452 4.9938 3.4655 25 6 3.8452 4.3108 3.4091 26 7 4.2114 3.6801 2.3103 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.7409 2.6917 0.9301 33 1 6.8630 5.6283 -4.6880 34 1 7.8846 5.0804 -0.5690 35 1 7.9765 3.3264 -0.2803 36 1 6.8679 5.4126 1.6519 37 1 8.4196 4.5552 1.8102 38 1 6.8888 3.6562 1.9401 39 1 1.6323 4.3349 0.3206 40 1 0.8804 5.5355 2.3635 41 1 2.3513 5.5091 4.3680 42 1 4.4910 4.2941 4.2746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:40 Heat of formation + Delta-G solvation = -61.701520 kcal Electronic energy + Delta-G solvation = -24338.630520 eV Core-core repulsion = 20897.373070 eV Total energy + Delta-G solvation = -3441.257450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89319 -40.84789 -38.52151 -37.48694 -35.02456 -33.97958 -33.33055 -32.54687 -31.56661 -29.36729 -27.70860 -24.56586 -24.44953 -24.21620 -23.33615 -21.85222 -21.58056 -19.05653 -18.67471 -18.23685 -17.64244 -17.38515 -17.24556 -16.71377 -16.48749 -15.84689 -15.40268 -15.14540 -14.92338 -14.85178 -14.33143 -14.19383 -13.90042 -13.81104 -13.70989 -13.41153 -13.36498 -12.89668 -12.83446 -12.65638 -12.49918 -12.47548 -12.19284 -11.92231 -11.55119 -11.52412 -11.33376 -11.23335 -10.79334 -10.71020 -10.43546 -9.92584 -9.23192 -8.28643 -6.31472 0.08986 0.39657 1.16327 1.28460 1.32369 1.43131 1.56231 2.30032 2.85021 3.03540 3.04065 3.50702 3.81937 3.88668 3.98699 4.07394 4.09567 4.20910 4.24801 4.26674 4.31936 4.32690 4.37010 4.45824 4.62434 4.79500 4.83145 4.86374 4.92035 5.01892 5.05739 5.11674 5.18587 5.25759 5.28043 5.39376 5.41381 5.67466 5.79193 5.96845 6.32271 6.73232 6.76067 6.84243 7.03572 7.32963 8.88549 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.006275 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.651881 B = 4460.933944 C = 5500.734472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.477 3.523 5 O -0.516 6.516 6 C 0.155 3.845 7 H 0.117 0.883 8 N -0.659 5.659 9 C 0.209 3.791 10 H -0.004 1.004 11 C -0.507 4.507 12 H 0.031 0.969 13 C 0.015 3.985 14 N -0.946 5.946 15 Si 0.947 3.053 16 H -0.265 1.265 17 H -0.295 1.295 18 H -0.251 1.251 19 C -0.134 4.134 20 C -0.142 4.142 21 C 0.079 3.921 22 C -0.157 4.157 23 C -0.072 4.072 24 C -0.161 4.161 25 C 0.087 3.913 26 N -0.501 5.501 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.352 0.648 33 H 0.266 0.734 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.173 0.827 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 -0.013 18.000 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.319 3.681 5 O -0.403 6.403 6 C 0.041 3.959 7 H 0.134 0.866 8 N -0.294 5.294 9 C 0.101 3.899 10 H 0.014 0.986 11 C -0.545 4.545 12 H 0.050 0.950 13 C -0.182 4.182 14 N -0.587 5.587 15 Si 0.774 3.226 16 H -0.191 1.191 17 H -0.223 1.223 18 H -0.176 1.176 19 C -0.171 4.171 20 C -0.199 4.199 21 C -0.059 4.059 22 C -0.177 4.177 23 C -0.097 4.097 24 C -0.180 4.180 25 C -0.070 4.070 26 N -0.211 5.211 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.163 0.837 40 H 0.188 0.812 41 H 0.191 0.809 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.305 -1.079 17.236 21.205 hybrid contribution -0.201 1.250 -0.001 1.266 sum -12.506 0.171 17.235 21.295 Atomic orbital electron populations 1.21799 0.89593 1.04502 1.03819 1.23321 0.97572 0.79256 1.02161 1.86487 1.23175 1.33793 1.83907 1.23588 0.80836 0.92046 0.71650 1.90597 1.61195 1.43222 1.45293 1.19833 0.90865 0.88538 0.96621 0.86581 1.59996 1.01518 1.39415 1.28435 1.19301 0.91472 0.86459 0.92717 0.98634 1.21264 1.39626 1.02831 0.90820 0.95016 1.25750 0.95975 1.01366 0.95123 1.70040 1.48150 1.34443 1.06045 0.85872 0.79563 0.78492 0.78633 1.19150 1.22278 1.17563 1.21970 0.98059 1.00651 0.96463 1.21774 1.02041 1.01457 0.94630 1.21353 0.93057 0.97739 0.93793 1.22153 0.96236 0.98053 1.01304 1.21998 1.00659 0.95609 0.91472 1.22573 0.94934 0.99791 1.00700 1.23246 0.95946 0.92638 0.95156 1.67073 1.34371 1.19497 1.00169 0.91256 0.87902 0.90947 0.92015 0.91591 0.82442 0.92492 0.93798 0.92183 0.93716 0.91273 0.91510 0.83750 0.81219 0.80928 0.80220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.29 6.19 71.98 0.45 1.73 16 3 O -0.36 -11.55 10.12 -51.41 -0.52 -12.07 16 4 C 0.48 18.99 7.31 71.24 0.52 19.51 16 5 O -0.52 -23.51 16.18 21.97 0.36 -23.15 16 6 C 0.15 6.27 2.58 43.42 0.11 6.39 16 7 H 0.12 5.05 7.51 -2.38 -0.02 5.03 16 8 N -0.66 -30.04 5.49 -481.05 -2.64 -32.68 16 9 C 0.21 10.21 1.45 44.17 0.06 10.27 16 10 H 0.00 -0.19 6.71 -2.39 -0.02 -0.21 16 11 C -0.51 -30.07 8.95 25.60 0.23 -29.84 16 12 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 13 C 0.02 0.90 5.45 84.66 0.46 1.36 16 14 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 15 Si 0.95 45.70 24.41 68.60 1.67 47.37 16 16 H -0.27 -12.23 6.83 99.48 0.68 -11.55 16 17 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.25 -11.35 6.53 99.48 0.65 -10.70 16 19 C -0.13 -5.90 5.03 30.60 0.15 -5.74 16 20 C -0.14 -4.91 9.78 71.98 0.70 -4.20 16 21 C 0.08 2.63 5.44 42.55 0.23 2.86 16 22 C -0.16 -4.13 9.74 22.36 0.22 -3.91 16 23 C -0.07 -1.33 10.18 22.47 0.23 -1.11 16 24 C -0.16 -2.72 10.11 22.36 0.23 -2.50 16 25 C 0.09 1.95 11.18 84.67 0.95 2.90 16 26 N -0.50 -15.58 8.69 -183.88 -1.60 -17.18 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.07 1.67 8.13 -2.38 -0.02 1.65 16 32 H 0.35 15.04 5.19 -89.69 -0.47 14.57 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.04 2.01 3.22 -2.39 -0.01 2.00 16 35 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.25 6.18 -2.39 -0.01 2.23 16 39 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -77.08 345.51 3.32 -73.76 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.47 Total: 27.72 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.28 Total: -3.86 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.94 Total: -109.76 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.16 Total: -35.22 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.37 kcal Total: -77.08 3.32 -73.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.055 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds