Wall clock time and date at job start Tue Mar 31 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46931 * 2 1 4 4 H 1.09001 * 109.47350 * 304.51477 * 3 2 1 5 5 C 1.50701 * 109.46752 * 184.51817 * 3 2 1 6 6 H 1.08003 * 120.00066 * 245.41172 * 5 3 2 7 7 C 1.37875 * 120.00179 * 65.41480 * 5 3 2 8 8 N 1.31514 * 120.00086 * 192.32181 * 7 5 3 9 9 Si 1.86793 * 120.00121 * 12.31678 * 7 5 3 10 10 H 1.48500 * 109.47361 * 95.31719 * 9 7 5 11 11 H 1.48498 * 109.47354 * 215.31590 * 9 7 5 12 12 H 1.48506 * 109.47045 * 335.31835 * 9 7 5 13 13 N 1.46900 * 109.47310 * 64.51839 * 3 2 1 14 14 C 1.46897 * 110.99888 * 257.30793 * 13 3 2 15 15 C 1.53004 * 109.46890 * 184.24736 * 14 13 3 16 16 O 1.42890 * 109.47123 * 65.00362 * 15 14 13 17 17 C 1.35713 * 117.00214 * 179.97438 * 16 15 14 18 18 C 1.38999 * 119.90671 * 359.72944 * 17 16 15 19 19 C 1.37709 * 120.08455 * 179.72264 * 18 17 16 20 20 C 1.39736 * 119.90752 * 0.56853 * 19 18 17 21 21 C 1.47608 * 120.08560 * 179.68153 * 20 19 18 22 22 N 1.34776 * 119.99771 * 0.02562 * 21 20 19 23 23 O 1.21578 * 119.99769 * 180.02562 * 21 20 19 24 24 C 1.39729 * 119.82958 * 359.70475 * 20 19 18 25 25 C 1.37707 * 119.91127 * 359.97438 * 24 20 19 26 26 H 1.08998 * 109.47205 * 176.37079 * 1 2 3 27 27 H 1.09000 * 109.47557 * 296.37465 * 1 2 3 28 28 H 1.09003 * 109.47192 * 56.37137 * 1 2 3 29 29 H 1.09004 * 109.47143 * 240.00007 * 2 1 3 30 30 H 1.09000 * 109.46814 * 119.99937 * 2 1 3 31 31 H 0.97004 * 120.00390 * 180.02562 * 8 7 5 32 32 H 1.00896 * 110.99989 * 21.26537 * 13 3 2 33 33 H 1.08995 * 109.47669 * 304.25041 * 14 13 3 34 34 H 1.09004 * 109.46677 * 64.25029 * 14 13 3 35 35 H 1.09002 * 109.46843 * 185.00156 * 15 14 13 36 36 H 1.09002 * 109.47159 * 305.00195 * 15 14 13 37 37 H 1.07994 * 119.96127 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.04312 * 180.27155 * 19 18 17 39 39 H 0.96999 * 120.00149 * 0.02562 * 22 21 20 40 40 H 0.96997 * 120.00104 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.04627 * 179.97438 * 24 20 19 42 42 H 1.07993 * 119.96082 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6121 1.9792 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1449 1.8111 0.7060 7 6 4.1492 0.9765 -1.2586 8 7 5.4444 0.7490 -1.2716 9 14 3.1310 0.6662 -2.7936 10 1 3.1939 1.8571 -3.6785 11 1 3.6696 -0.5151 -3.5144 12 1 1.7199 0.4099 -2.4082 13 7 1.6414 2.1028 1.2502 14 6 0.4953 2.9954 1.0320 15 6 0.1770 3.7430 2.3285 16 8 1.2679 4.6033 2.6623 17 6 1.1449 5.3439 3.7928 18 6 -0.0083 5.2472 4.5627 19 6 -0.1346 5.9928 5.7136 20 6 0.8936 6.8562 6.1007 21 6 0.7594 7.6625 7.3298 22 7 -0.3558 7.5659 8.0806 23 8 1.6548 8.4135 7.6649 24 6 2.0489 6.9548 5.3210 25 6 2.1704 6.2010 4.1750 26 1 -0.3633 -1.0256 -0.0650 27 1 -0.3634 0.4565 0.9207 28 1 -0.3634 0.5691 -0.8557 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8711 0.4205 -2.0784 32 1 1.4395 1.4242 1.9691 33 1 0.7379 3.7134 0.2487 34 1 -0.3711 2.4069 0.7298 35 1 -0.7263 4.3377 2.1925 36 1 0.0214 3.0245 3.1333 37 1 -0.8047 4.5835 4.2601 38 1 -1.0292 5.9138 6.3136 39 1 -1.0699 6.9664 7.8134 40 1 -0.4438 8.0954 8.8885 41 1 2.8456 7.6213 5.6167 42 1 3.0631 6.2763 3.5721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:42 Heat of formation + Delta-G solvation = -76.903398 kcal Electronic energy + Delta-G solvation = -22550.827426 eV Core-core repulsion = 19108.910773 eV Total energy + Delta-G solvation = -3441.916653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38276 -40.31858 -38.66169 -37.79727 -34.86458 -34.57746 -33.31233 -32.02030 -31.09994 -30.08933 -28.18040 -24.91909 -24.48720 -23.90236 -22.50563 -21.70395 -21.43714 -19.54495 -18.85488 -18.65597 -17.83412 -17.11527 -16.78864 -16.59649 -16.03358 -15.97756 -15.79618 -15.56407 -15.19088 -14.81302 -14.53924 -14.37958 -14.16725 -13.86801 -13.69932 -13.39499 -13.31968 -13.17258 -12.74262 -12.61773 -12.32750 -12.15733 -11.78547 -11.71602 -11.57875 -11.30194 -11.19566 -11.16799 -10.70252 -10.55990 -10.09093 -9.22006 -8.87601 -8.23687 -6.21858 -0.09187 0.33861 1.34309 1.38045 1.47072 1.85071 2.27876 2.38006 2.59749 2.86540 3.09986 3.50812 3.73899 3.86386 3.98024 4.08125 4.20695 4.24647 4.32272 4.37667 4.42772 4.50389 4.52626 4.58659 4.71530 4.83509 4.94261 4.97963 5.11746 5.14475 5.20543 5.26227 5.26846 5.34622 5.55458 5.68411 5.77012 5.90764 6.08025 6.45049 6.50686 6.76061 6.85299 6.88704 7.32570 7.41717 8.94462 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028258 B = 0.002825 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.632094 B = 9908.321908 C =10584.979268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.199 3.801 4 H 0.023 0.977 5 C -0.502 4.502 6 H 0.025 0.975 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.931 3.069 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.217 1.217 13 N -0.686 5.686 14 C 0.053 3.947 15 C 0.063 3.937 16 O -0.317 6.317 17 C 0.153 3.847 18 C -0.219 4.219 19 C -0.027 4.027 20 C -0.204 4.204 21 C 0.567 3.433 22 N -0.829 5.829 23 O -0.596 6.596 24 C -0.028 4.028 25 C -0.184 4.184 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.262 0.738 32 H 0.335 0.665 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.417 0.583 40 H 0.412 0.588 41 H 0.132 0.868 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.615 7.559 13.777 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.190 4.190 3 C 0.090 3.910 4 H 0.041 0.959 5 C -0.541 4.541 6 H 0.043 0.957 7 C -0.191 4.191 8 N -0.595 5.595 9 Si 0.755 3.245 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.140 1.140 13 N -0.317 5.317 14 C -0.076 4.076 15 C -0.012 4.012 16 O -0.230 6.230 17 C 0.106 3.894 18 C -0.237 4.237 19 C -0.045 4.045 20 C -0.207 4.207 21 C 0.354 3.646 22 N -0.394 5.394 23 O -0.478 6.478 24 C -0.047 4.047 25 C -0.203 4.203 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.250 0.750 40 H 0.245 0.755 41 H 0.150 0.850 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.253 8.394 13.539 26.560 hybrid contribution -0.225 -0.867 -0.835 1.224 sum -21.478 7.527 12.704 26.065 Atomic orbital electron populations 1.21867 0.94508 1.02136 1.01820 1.22476 0.96239 0.99182 1.01062 1.19344 0.92950 0.90084 0.88642 0.95870 1.21380 0.92165 1.39517 1.01041 0.95697 1.25864 0.95853 0.95053 1.02315 1.70127 1.12382 1.47676 1.29278 0.86135 0.81923 0.77391 0.79017 1.20959 1.21537 1.13953 1.60323 1.37417 1.24593 1.09393 1.22220 0.93354 0.95619 0.96390 1.23155 0.88152 0.92260 0.97588 1.86269 1.44793 1.53313 1.38611 1.19670 0.94208 0.89555 0.85997 1.21512 0.98461 1.05871 0.97874 1.21410 0.97490 0.90999 0.94613 1.19804 0.98124 1.04421 0.98352 1.18295 0.82081 0.80731 0.83449 1.43527 1.19417 1.47829 1.28589 1.90794 1.42094 1.41641 1.73298 1.21053 0.96757 0.95313 0.91604 1.20521 1.00010 1.00192 0.99543 0.91845 0.91418 0.93032 0.93720 0.92901 0.92896 0.84638 0.92156 0.90660 0.88476 0.90177 0.81872 0.81044 0.75026 0.75537 0.85003 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 8.86 71.98 0.64 -3.32 16 2 C -0.15 -5.72 4.48 30.59 0.14 -5.59 16 3 C 0.20 8.77 1.74 44.17 0.08 8.85 16 4 H 0.02 1.03 6.21 -2.39 -0.01 1.02 16 5 C -0.50 -29.11 9.29 25.60 0.24 -28.87 16 6 H 0.02 1.67 8.06 -2.91 -0.02 1.64 16 7 C 0.01 0.31 5.37 84.65 0.45 0.76 16 8 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 9 Si 0.93 43.35 25.74 68.60 1.77 45.11 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.22 -8.74 5.34 99.48 0.53 -8.20 16 13 N -0.69 -25.64 5.99 -495.45 -2.97 -28.60 16 14 C 0.05 1.47 5.51 86.31 0.48 1.95 16 15 C 0.06 1.35 5.05 71.98 0.36 1.71 16 16 O -0.32 -9.42 10.07 -90.35 -0.91 -10.33 16 17 C 0.15 3.87 6.70 22.64 0.15 4.02 16 18 C -0.22 -3.69 9.01 22.33 0.20 -3.49 16 19 C -0.03 -0.37 9.53 22.51 0.21 -0.16 16 20 C -0.20 -4.15 5.88 -20.08 -0.12 -4.27 16 21 C 0.57 11.72 8.04 86.72 0.70 12.41 16 22 N -0.83 -8.04 8.82 -175.77 -1.55 -9.60 16 23 O -0.60 -17.98 17.17 -3.96 -0.07 -18.05 16 24 C -0.03 -0.71 9.58 22.50 0.22 -0.49 16 25 C -0.18 -4.99 9.97 22.33 0.22 -4.76 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.52 6.35 -2.39 -0.02 1.50 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.84 4.80 -2.38 -0.01 1.83 16 30 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.34 11.25 7.92 -89.70 -0.71 10.54 16 33 H 0.06 1.90 8.00 -2.39 -0.02 1.88 16 34 H 0.08 1.64 6.14 -2.39 -0.01 1.62 16 35 H 0.10 1.39 7.64 -2.39 -0.02 1.37 16 36 H 0.08 1.40 7.67 -2.39 -0.02 1.38 16 37 H 0.16 1.73 6.28 -2.91 -0.02 1.71 16 38 H 0.17 0.67 6.39 -2.91 -0.02 0.65 16 39 H 0.42 1.03 6.85 -92.71 -0.64 0.40 16 40 H 0.41 3.02 8.93 -92.71 -0.83 2.19 16 41 H 0.13 3.38 7.64 -2.91 -0.02 3.36 16 42 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -81.64 339.90 -0.74 -82.38 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -1.27 Total: 21.15 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.97 Total: -21.23 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.22 Total: -99.04 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.98 Total: -28.38 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.77 Total: 45.11 kcal Total: -81.64 -0.74 -82.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.478 kcal (2) G-P(sol) polarization free energy of solvation -81.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds