Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47197 * 2 1 4 4 H 1.09008 * 109.46859 * 55.77358 * 3 2 1 5 5 C 1.50701 * 109.47102 * 175.77284 * 3 2 1 6 6 H 1.08001 * 119.99929 * 114.76434 * 5 3 2 7 7 C 1.37877 * 120.00078 * 294.75806 * 5 3 2 8 8 N 1.31507 * 120.00164 * 170.19365 * 7 5 3 9 9 Si 1.86809 * 120.00055 * 350.19996 * 7 5 3 10 10 H 1.48496 * 109.47029 * 268.25251 * 9 7 5 11 11 H 1.48501 * 109.46821 * 28.25587 * 9 7 5 12 12 H 1.48503 * 109.46968 * 148.25157 * 9 7 5 13 13 N 1.46899 * 109.47389 * 295.77596 * 3 2 1 14 14 C 1.46903 * 111.00063 * 120.01652 * 13 3 2 15 15 C 1.53003 * 109.46736 * 183.31382 * 14 13 3 16 16 O 1.42900 * 109.47296 * 65.00352 * 15 14 13 17 17 C 1.35711 * 116.99868 * 179.97438 * 16 15 14 18 18 C 1.38992 * 119.91357 * 359.72390 * 17 16 15 19 19 C 1.37702 * 120.09166 * 179.72394 * 18 17 16 20 20 C 1.39740 * 119.90313 * 0.56774 * 19 18 17 21 21 C 1.47605 * 120.08213 * 179.67863 * 20 19 18 22 22 N 1.34777 * 120.00092 * 0.02597 * 21 20 19 23 23 O 1.21581 * 119.99727 * 180.02562 * 21 20 19 24 24 C 1.39731 * 119.82992 * 359.70622 * 20 19 18 25 25 C 1.37708 * 119.90945 * 359.97438 * 24 20 19 26 26 H 1.08995 * 109.47597 * 58.94477 * 1 2 3 27 27 H 1.09000 * 109.46968 * 178.95295 * 1 2 3 28 28 H 1.09001 * 109.46988 * 298.94387 * 1 2 3 29 29 H 1.09007 * 109.46524 * 240.00375 * 2 1 3 30 30 H 1.08998 * 109.47567 * 120.00576 * 2 1 3 31 31 H 0.96999 * 120.00549 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00195 * 356.06043 * 13 3 2 33 33 H 1.09005 * 109.46874 * 303.30853 * 14 13 3 34 34 H 1.08996 * 109.47241 * 63.31270 * 14 13 3 35 35 H 1.09004 * 109.46836 * 184.99599 * 15 14 13 36 36 H 1.08991 * 109.47165 * 304.99376 * 15 14 13 37 37 H 1.08004 * 119.95287 * 359.97438 * 18 17 16 38 38 H 1.07996 * 120.04779 * 180.27207 * 19 18 17 39 39 H 0.97001 * 119.99887 * 0.02562 * 22 21 20 40 40 H 0.96999 * 119.99666 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.04603 * 179.97438 * 24 20 19 42 42 H 1.07993 * 119.95675 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6161 1.9777 0.8498 5 6 3.5434 1.4437 0.1047 6 1 4.1414 1.8150 -0.7144 7 6 4.1553 0.9710 1.2463 8 7 5.4578 0.7907 1.2676 9 14 3.1342 0.5865 2.7626 10 1 3.0734 1.7862 3.6356 11 1 1.7599 0.2042 2.3499 12 1 3.7579 -0.5366 3.5075 13 7 1.6355 2.1049 -1.2472 14 6 0.7917 3.2755 -0.9718 15 6 0.3235 3.8888 -2.2930 16 8 -0.5255 2.9626 -2.9738 17 6 -1.0303 3.3547 -4.1709 18 6 -0.7179 4.6110 -4.6769 19 6 -1.2235 5.0104 -5.8939 20 6 -2.0614 4.1554 -6.6147 21 6 -2.6114 4.5823 -7.9162 22 7 -2.3051 5.7979 -8.4111 23 8 -3.3406 3.8373 -8.5418 24 6 -2.3778 2.8954 -6.0998 25 6 -1.8627 2.5009 -4.8852 26 1 -0.3634 0.5301 -0.8803 27 1 -0.3633 -1.0275 -0.0188 28 1 -0.3633 0.4973 0.8993 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.8883 0.4579 2.0706 32 1 1.1670 1.4587 -1.8644 33 1 -0.0751 2.9688 -0.3862 34 1 1.3658 4.0136 -0.4118 35 1 -0.2282 4.8072 -2.0919 36 1 1.1891 4.1140 -2.9159 37 1 -0.0743 5.2732 -4.1168 38 1 -0.9768 5.9850 -6.2885 39 1 -1.7230 6.3921 -7.9121 40 1 -2.6663 6.0783 -9.2666 41 1 -3.0253 2.2320 -6.6537 42 1 -2.1064 1.5272 -4.4868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = -50.059783 kcal Electronic energy + Delta-G solvation = -22608.900914 eV Core-core repulsion = 19168.148288 eV Total energy + Delta-G solvation = -3440.752627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61121 -39.50155 -37.47907 -36.50087 -34.13174 -32.83754 -31.79642 -31.26510 -30.22656 -28.60274 -26.59967 -24.02478 -23.43725 -22.49915 -21.49530 -20.63414 -19.90539 -18.80134 -17.90274 -17.14474 -16.73275 -16.15339 -15.75107 -15.30673 -15.06744 -14.87413 -14.74246 -14.24218 -14.01012 -13.81537 -13.55383 -13.20273 -12.74642 -12.71394 -12.41249 -12.19451 -11.96380 -11.68416 -11.54486 -11.12333 -10.95037 -10.86329 -10.56615 -10.35196 -10.32682 -10.04351 -9.90794 -9.36155 -9.35305 -9.22659 -8.46281 -8.44234 -7.40423 -6.04196 -3.98744 0.67524 1.07323 2.63007 3.06376 3.22822 3.26053 3.35016 3.37620 3.62304 4.39272 4.42459 4.54574 4.63860 4.79298 4.89608 5.04862 5.19479 5.22607 5.32894 5.35021 5.54316 5.66525 5.80119 5.83142 5.86530 5.98860 6.02104 6.03119 6.05611 6.11780 6.40340 6.48116 6.51048 6.56836 6.73023 6.86385 7.00024 7.17714 7.23927 7.77128 7.88686 7.95619 8.28929 8.73566 9.11645 9.60660 11.09380 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035699 B = 0.002707 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.144515 B =10339.777391 C =10672.807814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 C 0.192 3.808 4 H 0.014 0.986 5 C -0.496 4.496 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.247 1.247 12 H -0.288 1.288 13 N -0.672 5.672 14 C 0.063 3.937 15 C 0.057 3.943 16 O -0.306 6.306 17 C 0.173 3.827 18 C -0.220 4.220 19 C -0.042 4.042 20 C -0.193 4.193 21 C 0.570 3.430 22 N -0.855 5.855 23 O -0.547 6.547 24 C -0.017 4.017 25 C -0.165 4.165 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.262 0.738 32 H 0.332 0.668 33 H 0.030 0.970 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.400 0.600 40 H 0.403 0.597 41 H 0.141 0.859 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.645 10.390 -12.895 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.084 3.916 4 H 0.032 0.968 5 C -0.534 4.534 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.172 1.172 12 H -0.215 1.215 13 N -0.304 5.304 14 C -0.067 4.067 15 C -0.018 4.018 16 O -0.218 6.218 17 C 0.126 3.874 18 C -0.239 4.239 19 C -0.061 4.061 20 C -0.197 4.197 21 C 0.357 3.643 22 N -0.418 5.418 23 O -0.425 6.425 24 C -0.036 4.036 25 C -0.183 4.183 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.230 0.770 40 H 0.234 0.766 41 H 0.159 0.841 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.368 9.917 -12.959 22.415 hybrid contribution -0.871 0.068 1.163 1.454 sum -16.239 9.985 -11.796 22.418 Atomic orbital electron populations 1.21905 0.98384 1.00335 1.00637 1.22565 0.92821 1.01063 1.02377 1.19569 0.96642 0.88780 0.86645 0.96838 1.21062 0.88966 1.40674 1.02698 0.90171 1.24945 0.94694 0.95204 0.98480 1.69923 1.09187 1.46222 1.28481 0.87407 0.82137 0.78172 0.83914 1.20880 1.17186 1.21456 1.60680 1.42470 1.09985 1.17259 1.22077 0.95520 0.96279 0.92787 1.23191 0.92567 0.91366 0.94655 1.86081 1.61489 1.44541 1.29664 1.19369 0.90801 0.92167 0.85103 1.21249 1.06624 0.97135 0.98898 1.21013 0.93592 0.98172 0.93301 1.19683 1.05719 0.97442 0.96809 1.18204 0.79631 0.81229 0.85239 1.43759 1.54010 1.18177 1.25900 1.90812 1.37513 1.53338 1.60882 1.21044 0.95142 0.94147 0.93274 1.20477 1.01151 1.01061 0.95651 0.93291 0.93853 0.93864 0.92120 0.91540 0.92819 0.85011 0.95208 0.89018 0.91856 0.90514 0.84532 0.85564 0.77040 0.76596 0.84113 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.77 37.16 0.36 -2.30 16 2 C -0.15 -3.12 4.48 -26.73 -0.12 -3.24 16 3 C 0.19 4.33 1.76 -68.87 -0.12 4.21 16 4 H 0.01 0.32 6.38 -51.92 -0.33 -0.01 16 5 C -0.50 -13.68 9.31 -34.44 -0.32 -14.00 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 1.92 5.40 -17.82 -0.10 1.83 16 8 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 9 Si 0.86 20.62 25.79 -169.99 -4.38 16.23 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.25 -5.51 5.12 56.52 0.29 -5.22 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.67 -13.04 6.19 -107.95 -0.67 -13.71 16 14 C 0.06 0.99 5.78 -3.82 -0.02 0.96 16 15 C 0.06 0.70 5.06 37.16 0.19 0.89 16 16 O -0.31 -4.03 9.60 -18.84 -0.18 -4.21 16 17 C 0.17 2.02 6.70 -39.02 -0.26 1.76 16 18 C -0.22 -2.13 9.01 -39.50 -0.36 -2.49 16 19 C -0.04 -0.35 9.53 -39.22 -0.37 -0.72 16 20 C -0.19 -1.95 5.88 -104.96 -0.62 -2.57 16 21 C 0.57 5.92 8.04 -12.44 -0.10 5.82 16 22 N -0.85 -5.12 8.82 30.47 0.27 -4.85 16 23 O -0.55 -7.79 17.17 5.29 0.09 -7.70 16 24 C -0.02 -0.18 9.58 -39.22 -0.38 -0.56 16 25 C -0.16 -1.82 9.97 -39.49 -0.39 -2.21 16 26 H 0.05 0.79 7.01 -51.93 -0.36 0.42 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.48 4.41 -51.93 -0.23 1.25 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.33 6.14 6.56 -39.29 -0.26 5.88 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.61 7.64 -51.93 -0.40 0.22 16 36 H 0.08 0.94 7.66 -51.93 -0.40 0.54 16 37 H 0.14 1.11 6.28 -52.48 -0.33 0.78 16 38 H 0.13 0.60 6.39 -52.49 -0.34 0.26 16 39 H 0.40 1.30 6.85 -40.82 -0.28 1.02 16 40 H 0.40 1.89 8.93 -40.82 -0.36 1.53 16 41 H 0.14 1.44 7.64 -52.49 -0.40 1.04 16 42 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -33.50 342.03 -7.45 -40.95 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.89 Total: 7.30 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.61 Total: -12.63 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.37 Total: -45.09 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.09 Total: -11.91 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.38 Total: 16.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.50 -7.45 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.115 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds