Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47197 * 2 1 4 4 H 1.09008 * 109.46859 * 55.77358 * 3 2 1 5 5 C 1.50701 * 109.47102 * 175.77284 * 3 2 1 6 6 H 1.08001 * 119.99929 * 114.76434 * 5 3 2 7 7 C 1.37877 * 120.00078 * 294.75806 * 5 3 2 8 8 N 1.31507 * 120.00164 * 170.19365 * 7 5 3 9 9 Si 1.86809 * 120.00055 * 350.19996 * 7 5 3 10 10 H 1.48496 * 109.47029 * 268.25251 * 9 7 5 11 11 H 1.48501 * 109.46821 * 28.25587 * 9 7 5 12 12 H 1.48503 * 109.46968 * 148.25157 * 9 7 5 13 13 N 1.46899 * 109.47389 * 295.77596 * 3 2 1 14 14 C 1.46903 * 111.00063 * 120.01652 * 13 3 2 15 15 C 1.53003 * 109.46736 * 183.31382 * 14 13 3 16 16 O 1.42900 * 109.47296 * 65.00352 * 15 14 13 17 17 C 1.35711 * 116.99868 * 179.97438 * 16 15 14 18 18 C 1.38992 * 119.91357 * 359.72390 * 17 16 15 19 19 C 1.37702 * 120.09166 * 179.72394 * 18 17 16 20 20 C 1.39740 * 119.90313 * 0.56774 * 19 18 17 21 21 C 1.47605 * 120.08213 * 179.67863 * 20 19 18 22 22 N 1.34777 * 120.00092 * 0.02597 * 21 20 19 23 23 O 1.21581 * 119.99727 * 180.02562 * 21 20 19 24 24 C 1.39731 * 119.82992 * 359.70622 * 20 19 18 25 25 C 1.37708 * 119.90945 * 359.97438 * 24 20 19 26 26 H 1.08995 * 109.47597 * 58.94477 * 1 2 3 27 27 H 1.09000 * 109.46968 * 178.95295 * 1 2 3 28 28 H 1.09001 * 109.46988 * 298.94387 * 1 2 3 29 29 H 1.09007 * 109.46524 * 240.00375 * 2 1 3 30 30 H 1.08998 * 109.47567 * 120.00576 * 2 1 3 31 31 H 0.96999 * 120.00549 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00195 * 356.06043 * 13 3 2 33 33 H 1.09005 * 109.46874 * 303.30853 * 14 13 3 34 34 H 1.08996 * 109.47241 * 63.31270 * 14 13 3 35 35 H 1.09004 * 109.46836 * 184.99599 * 15 14 13 36 36 H 1.08991 * 109.47165 * 304.99376 * 15 14 13 37 37 H 1.08004 * 119.95287 * 359.97438 * 18 17 16 38 38 H 1.07996 * 120.04779 * 180.27207 * 19 18 17 39 39 H 0.97001 * 119.99887 * 0.02562 * 22 21 20 40 40 H 0.96999 * 119.99666 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.04603 * 179.97438 * 24 20 19 42 42 H 1.07993 * 119.95675 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6161 1.9777 0.8498 5 6 3.5434 1.4437 0.1047 6 1 4.1414 1.8150 -0.7144 7 6 4.1553 0.9710 1.2463 8 7 5.4578 0.7907 1.2676 9 14 3.1342 0.5865 2.7626 10 1 3.0734 1.7862 3.6356 11 1 1.7599 0.2042 2.3499 12 1 3.7579 -0.5366 3.5075 13 7 1.6355 2.1049 -1.2472 14 6 0.7917 3.2755 -0.9718 15 6 0.3235 3.8888 -2.2930 16 8 -0.5255 2.9626 -2.9738 17 6 -1.0303 3.3547 -4.1709 18 6 -0.7179 4.6110 -4.6769 19 6 -1.2235 5.0104 -5.8939 20 6 -2.0614 4.1554 -6.6147 21 6 -2.6114 4.5823 -7.9162 22 7 -2.3051 5.7979 -8.4111 23 8 -3.3406 3.8373 -8.5418 24 6 -2.3778 2.8954 -6.0998 25 6 -1.8627 2.5009 -4.8852 26 1 -0.3634 0.5301 -0.8803 27 1 -0.3633 -1.0275 -0.0188 28 1 -0.3633 0.4973 0.8993 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.8883 0.4579 2.0706 32 1 1.1670 1.4587 -1.8644 33 1 -0.0751 2.9688 -0.3862 34 1 1.3658 4.0136 -0.4118 35 1 -0.2282 4.8072 -2.0919 36 1 1.1891 4.1140 -2.9159 37 1 -0.0743 5.2732 -4.1168 38 1 -0.9768 5.9850 -6.2885 39 1 -1.7230 6.3921 -7.9121 40 1 -2.6663 6.0783 -9.2666 41 1 -3.0253 2.2320 -6.6537 42 1 -2.1064 1.5272 -4.4868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = -76.459305 kcal Electronic energy + Delta-G solvation = -22610.045683 eV Core-core repulsion = 19168.148288 eV Total energy + Delta-G solvation = -3441.897396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.42103 -40.36108 -38.63898 -37.78874 -34.87431 -34.56330 -33.46824 -32.04032 -31.12384 -29.97347 -28.24988 -24.93800 -24.50553 -23.95475 -22.52336 -21.64995 -21.44518 -19.56101 -18.84032 -18.62540 -17.86910 -17.31549 -16.70194 -16.55738 -16.15142 -16.02055 -15.79971 -15.65815 -15.08547 -14.85775 -14.72218 -14.35312 -14.24899 -13.80514 -13.66350 -13.48329 -13.19688 -13.08288 -12.98893 -12.61779 -12.27182 -12.17467 -11.85268 -11.82816 -11.57848 -11.24752 -11.20395 -11.08021 -10.71022 -10.56495 -10.09839 -9.26539 -8.96934 -8.22793 -6.22207 -0.11433 0.32930 1.35827 1.39048 1.47775 1.83721 2.16629 2.38655 2.59176 2.85217 3.10365 3.48876 3.71340 3.85143 3.96069 4.05783 4.21146 4.27178 4.34224 4.35538 4.42392 4.47599 4.50491 4.55289 4.77442 4.86366 4.91919 4.96549 5.09193 5.11969 5.17190 5.24869 5.26439 5.33407 5.51295 5.65230 5.77984 5.89606 6.08155 6.37704 6.43882 6.67852 6.84377 6.88300 7.30960 7.42134 8.94692 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035699 B = 0.002707 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.144515 B =10339.777391 C =10672.807814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 C 0.197 3.803 4 H 0.017 0.983 5 C -0.499 4.499 6 H 0.030 0.970 7 C 0.007 3.993 8 N -0.953 5.953 9 Si 0.924 3.076 10 H -0.278 1.278 11 H -0.215 1.215 12 H -0.292 1.292 13 N -0.686 5.686 14 C 0.061 3.939 15 C 0.065 3.935 16 O -0.323 6.323 17 C 0.154 3.846 18 C -0.221 4.221 19 C -0.030 4.030 20 C -0.201 4.201 21 C 0.566 3.434 22 N -0.831 5.831 23 O -0.594 6.594 24 C -0.029 4.029 25 C -0.174 4.174 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.262 0.738 32 H 0.337 0.663 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.416 0.584 40 H 0.412 0.588 41 H 0.137 0.863 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 11.905 -12.765 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C 0.088 3.912 4 H 0.035 0.965 5 C -0.538 4.538 6 H 0.048 0.952 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.138 1.138 12 H -0.218 1.218 13 N -0.318 5.318 14 C -0.068 4.068 15 C -0.010 4.010 16 O -0.236 6.236 17 C 0.107 3.893 18 C -0.240 4.240 19 C -0.049 4.049 20 C -0.205 4.205 21 C 0.354 3.646 22 N -0.395 5.395 23 O -0.477 6.477 24 C -0.048 4.048 25 C -0.193 4.193 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.249 0.751 40 H 0.244 0.756 41 H 0.155 0.845 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.565 11.491 -12.857 24.615 hybrid contribution -0.129 -0.311 0.968 1.025 sum -17.695 11.180 -11.889 24.072 Atomic orbital electron populations 1.21797 0.94967 1.02011 1.01457 1.22434 0.95788 0.99195 1.01333 1.19351 0.93215 0.90423 0.88213 0.96479 1.21373 0.91773 1.39529 1.01119 0.95155 1.25829 0.95759 0.95259 1.02046 1.70094 1.11501 1.48269 1.29534 0.86312 0.81884 0.77823 0.79135 1.20450 1.13813 1.21813 1.60470 1.44409 1.10939 1.16028 1.22132 0.95073 0.94619 0.95017 1.23078 0.93059 0.91935 0.92922 1.86023 1.61862 1.45214 1.30497 1.19560 0.91519 0.93288 0.84931 1.21512 1.06527 0.96531 0.99387 1.21377 0.91858 0.99277 0.92358 1.19829 1.06108 0.97541 0.96982 1.18318 0.79196 0.81954 0.85156 1.43568 1.53057 1.16811 1.26084 1.90792 1.39797 1.54985 1.62092 1.21105 0.95467 0.94843 0.93341 1.20538 1.01516 1.01366 0.95857 0.92278 0.91808 0.93215 0.93024 0.92865 0.92876 0.84429 0.94428 0.89389 0.88552 0.90657 0.82659 0.81575 0.75111 0.75553 0.84542 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.77 71.98 0.70 -3.81 16 2 C -0.15 -5.98 4.48 30.59 0.14 -5.84 16 3 C 0.20 8.76 1.76 44.17 0.08 8.83 16 4 H 0.02 0.76 6.38 -2.38 -0.02 0.75 16 5 C -0.50 -28.30 9.31 25.60 0.24 -28.06 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.42 5.40 84.66 0.46 0.88 16 8 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 9 Si 0.92 42.57 25.79 68.60 1.77 44.34 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.22 -8.74 5.12 99.48 0.51 -8.23 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 13 N -0.69 -26.13 6.19 -495.43 -3.07 -29.20 16 14 C 0.06 1.78 5.78 86.30 0.50 2.28 16 15 C 0.06 1.43 5.06 71.98 0.36 1.80 16 16 O -0.32 -7.91 9.60 -90.32 -0.87 -8.78 16 17 C 0.15 3.33 6.70 22.63 0.15 3.48 16 18 C -0.22 -3.63 9.01 22.32 0.20 -3.43 16 19 C -0.03 -0.40 9.53 22.51 0.21 -0.19 16 20 C -0.20 -3.72 5.88 -20.08 -0.12 -3.84 16 21 C 0.57 10.94 8.04 86.72 0.70 11.63 16 22 N -0.83 -7.71 8.82 -175.77 -1.55 -9.26 16 23 O -0.59 -16.83 17.17 -3.97 -0.07 -16.89 16 24 C -0.03 -0.60 9.58 22.51 0.22 -0.39 16 25 C -0.17 -3.74 9.97 22.33 0.22 -3.52 16 26 H 0.06 1.72 7.01 -2.39 -0.02 1.70 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 2.26 4.41 -2.39 -0.01 2.25 16 31 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.34 12.15 6.56 -89.69 -0.59 11.56 16 33 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.10 1.51 7.64 -2.38 -0.02 1.49 16 36 H 0.08 1.68 7.66 -2.39 -0.02 1.67 16 37 H 0.16 1.92 6.28 -2.91 -0.02 1.90 16 38 H 0.17 0.77 6.39 -2.91 -0.02 0.75 16 39 H 0.42 1.10 6.85 -92.71 -0.64 0.47 16 40 H 0.41 2.86 8.93 -92.71 -0.83 2.03 16 41 H 0.14 2.89 7.64 -2.91 -0.02 2.87 16 42 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -76.08 342.03 -0.61 -76.68 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -1.18 Total: 22.89 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.06 Total: -20.16 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -4.32 Total: -98.08 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.93 Total: -25.67 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.77 Total: 44.34 kcal Total: -76.08 -0.61 -76.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.221 kcal (2) G-P(sol) polarization free energy of solvation -76.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds