Wall clock time and date at job start Tue Mar 31 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47257 * 2 1 4 4 C 1.34230 * 117.00064 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00091 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99828 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46809 * 299.99838 * 6 4 3 8 8 N 1.46901 * 109.46848 * 180.02562 * 6 4 3 9 9 C 1.46900 * 110.99633 * 157.65878 * 8 6 4 10 10 H 1.09000 * 109.47751 * 34.05980 * 9 8 6 11 11 C 1.50699 * 109.46997 * 154.06406 * 9 8 6 12 12 H 1.07997 * 120.00444 * 3.88247 * 11 9 8 13 13 C 1.37881 * 119.99916 * 183.89057 * 11 9 8 14 14 N 1.31515 * 120.00046 * 8.82773 * 13 11 9 15 15 Si 1.86800 * 119.99799 * 188.56152 * 13 11 9 16 16 H 1.48497 * 109.47585 * 89.99630 * 15 13 11 17 17 H 1.48500 * 109.46781 * 209.99778 * 15 13 11 18 18 H 1.48495 * 109.47070 * 329.99378 * 15 13 11 19 19 C 1.53007 * 109.47002 * 274.05879 * 9 8 6 20 20 C 1.53002 * 109.47063 * 295.32868 * 19 9 8 21 21 C 1.50699 * 109.47181 * 60.00044 * 6 4 3 22 22 C 1.38680 * 120.41898 * 259.71928 * 21 6 4 23 23 C 1.38620 * 118.42000 * 179.78262 * 22 21 6 24 24 C 1.38229 * 119.16208 * 0.51464 * 23 22 21 25 25 N 1.31852 * 120.76256 * 359.72686 * 24 23 22 26 26 C 1.31886 * 121.72710 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47229 * 300.00215 * 1 2 3 28 28 H 1.08995 * 109.47346 * 60.00301 * 1 2 3 29 29 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47229 * 239.99785 * 2 1 3 31 31 H 1.09002 * 109.47193 * 120.00070 * 2 1 3 32 32 H 1.00892 * 110.99991 * 33.70314 * 8 6 4 33 33 H 0.97001 * 120.00005 * 3.08820 * 14 13 11 34 34 H 1.09002 * 109.46920 * 55.32897 * 19 9 8 35 35 H 1.08999 * 109.46904 * 175.32798 * 19 9 8 36 36 H 1.09003 * 109.46854 * 185.38198 * 20 19 9 37 37 H 1.08998 * 109.47081 * 305.38881 * 20 19 9 38 38 H 1.09006 * 109.46884 * 65.38672 * 20 19 9 39 39 H 1.08004 * 120.78423 * 0.02621 * 22 21 6 40 40 H 1.08001 * 120.42108 * 180.22279 * 23 22 21 41 41 H 1.07999 * 119.61765 * 179.74699 * 24 23 22 42 42 H 1.07996 * 119.61853 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8905 8 7 5.3877 2.8605 0.0001 9 6 5.9798 4.0994 -0.5217 10 1 5.3588 4.9480 -0.2347 11 6 7.3637 4.2740 0.0489 12 1 7.7878 3.5078 0.6809 13 6 8.0883 5.4119 -0.2359 14 7 7.5141 6.4188 -0.8572 15 14 9.8835 5.5263 0.2675 16 1 10.7393 5.0068 -0.8292 17 1 10.2323 6.9442 0.5382 18 1 10.1062 4.7191 1.4938 19 6 6.0634 4.0216 -2.0475 20 6 7.0275 2.9034 -2.4490 21 6 3.4557 3.6738 1.2298 22 6 2.4074 4.5784 1.1521 23 6 2.0105 5.2293 2.3098 24 6 2.6751 4.9651 3.4927 25 7 3.6713 4.1021 3.5283 26 6 4.0719 3.4603 2.4480 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7078 2.0588 -0.5222 33 1 6.5698 6.3792 -1.0753 34 1 5.0744 3.8125 -2.4553 35 1 6.4251 4.9718 -2.4405 36 1 7.1609 2.9098 -3.5308 37 1 7.9902 3.0619 -1.9632 38 1 6.6180 1.9419 -2.1391 39 1 1.9095 4.7682 0.2126 40 1 1.1954 5.9375 2.2870 41 1 2.3747 5.4711 4.3983 42 1 4.8914 2.7602 2.5161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:02 Heat of formation + Delta-G solvation = -54.220448 kcal Electronic energy + Delta-G solvation = -24203.304904 eV Core-core repulsion = 20762.371857 eV Total energy + Delta-G solvation = -3440.933047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72087 -39.63470 -37.29819 -36.25111 -33.84886 -32.04561 -31.82674 -31.31032 -29.88612 -27.23718 -25.06376 -23.69720 -23.50861 -23.17493 -22.30938 -20.61568 -19.49102 -17.90617 -16.97948 -16.91845 -16.60946 -16.19767 -15.93448 -15.00824 -14.53170 -14.02798 -13.90681 -13.63477 -13.47455 -13.42204 -13.14199 -12.93485 -12.82726 -12.80843 -12.42760 -11.98610 -11.87837 -11.70794 -11.33267 -11.17175 -10.76516 -10.60510 -10.55258 -10.36383 -10.16967 -10.08649 -9.92654 -9.51696 -9.19367 -8.78794 -8.63152 -8.27462 -7.61250 -6.33212 -4.01352 1.34046 1.55760 2.28227 2.64395 3.46269 3.50176 3.65847 4.08841 4.51611 4.62771 4.74567 4.76203 4.82604 4.87296 5.05646 5.08281 5.11145 5.26684 5.35811 5.39075 5.50903 5.53327 5.58698 5.76264 5.77532 6.03297 6.08130 6.10164 6.25055 6.31220 6.40420 6.51658 6.61390 6.83583 6.91317 7.01036 7.17054 7.28154 7.69672 7.81955 8.14524 8.26367 8.31005 8.61397 8.88375 9.65269 11.03074 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.005568 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.288901 B = 5027.813261 C = 6181.155768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.467 3.533 5 O -0.493 6.493 6 C 0.141 3.859 7 H 0.081 0.919 8 N -0.656 5.656 9 C 0.207 3.793 10 H 0.028 0.972 11 C -0.569 4.569 12 H 0.059 0.941 13 C 0.022 3.978 14 N -0.913 5.913 15 Si 1.066 2.934 16 H -0.289 1.289 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.153 4.153 20 C -0.133 4.133 21 C -0.121 4.121 22 C -0.060 4.060 23 C -0.182 4.182 24 C 0.095 3.905 25 N -0.489 5.489 26 C 0.147 3.853 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.348 0.652 33 H 0.267 0.733 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.151 0.849 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.575 -7.372 1.304 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.379 6.379 6 C 0.028 3.972 7 H 0.098 0.902 8 N -0.293 5.293 9 C 0.100 3.900 10 H 0.046 0.954 11 C -0.608 4.608 12 H 0.077 0.923 13 C -0.182 4.182 14 N -0.550 5.550 15 Si 0.895 3.105 16 H -0.215 1.215 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.193 4.193 20 C -0.191 4.191 21 C -0.124 4.124 22 C -0.087 4.087 23 C -0.202 4.202 24 C -0.062 4.062 25 N -0.198 5.198 26 C -0.010 4.010 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.545 -6.711 2.693 14.480 hybrid contribution -1.999 -0.947 -1.871 2.897 sum -14.544 -7.658 0.822 16.457 Atomic orbital electron populations 1.21789 0.92712 1.02796 1.03502 1.23006 0.95288 0.80538 1.02562 1.86520 1.24598 1.32084 1.84101 1.23795 0.80524 0.92610 0.72172 1.90649 1.60220 1.42504 1.44549 1.19918 0.92953 0.87812 0.96474 0.90196 1.60857 0.98967 1.08332 1.61096 1.19428 0.96043 0.85964 0.88581 0.95394 1.21758 0.99260 1.06768 1.32978 0.92280 1.25686 1.05613 0.92032 0.94896 1.70791 1.13520 1.31575 1.39082 0.83574 0.74855 0.75869 0.76193 1.21544 1.21297 1.21352 1.22244 0.95985 1.00141 1.00906 1.21610 1.01931 0.97095 0.98439 1.20388 0.97279 0.98989 0.95725 1.21411 0.94717 0.93702 0.98827 1.21984 1.02338 1.02037 0.93806 1.22752 0.91627 0.94273 0.97516 1.67788 1.12991 1.07478 1.31530 1.22745 0.96045 0.95467 0.86695 0.91486 0.91521 0.90352 0.91317 0.91256 0.82892 0.92154 0.96340 0.91009 0.95205 0.90564 0.94739 0.85138 0.85082 0.83205 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -5.11 10.14 -39.26 -0.40 -5.50 16 4 C 0.47 7.83 7.26 36.01 0.26 8.09 16 5 O -0.49 -9.23 15.45 -18.75 -0.29 -9.52 16 6 C 0.14 2.48 2.57 -70.02 -0.18 2.30 16 7 H 0.08 1.35 7.06 -51.93 -0.37 0.99 16 8 N -0.66 -13.54 5.16 -103.39 -0.53 -14.07 16 9 C 0.21 4.86 1.77 -68.86 -0.12 4.73 16 10 H 0.03 0.72 6.88 -51.93 -0.36 0.36 16 11 C -0.57 -15.11 7.21 -34.44 -0.25 -15.36 16 12 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 13 C 0.02 0.59 5.23 -17.82 -0.09 0.50 16 14 N -0.91 -26.30 12.93 55.43 0.72 -25.58 16 15 Si 1.07 24.97 29.91 -169.99 -5.08 19.89 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.15 -3.35 5.46 -26.73 -0.15 -3.50 16 20 C -0.13 -2.74 9.40 37.16 0.35 -2.39 16 21 C -0.12 -2.10 4.40 -104.48 -0.46 -2.56 16 22 C -0.06 -0.89 9.82 -39.28 -0.39 -1.28 16 23 C -0.18 -2.43 10.11 -39.44 -0.40 -2.83 16 24 C 0.10 1.40 11.18 -17.55 -0.20 1.20 16 25 N -0.49 -8.77 10.36 -13.25 -0.14 -8.90 16 26 C 0.15 2.76 10.49 -17.55 -0.18 2.57 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.35 7.24 5.43 -39.30 -0.21 7.02 16 33 H 0.27 7.65 6.08 -40.82 -0.25 7.40 16 34 H 0.02 0.36 7.42 -51.93 -0.39 -0.03 16 35 H 0.07 1.74 6.37 -51.93 -0.33 1.41 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.72 6.88 -51.93 -0.36 1.36 16 38 H 0.03 0.65 6.63 -51.93 -0.34 0.31 16 39 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.16 3.23 7.73 -52.49 -0.41 2.83 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -30.53 347.96 -7.69 -38.23 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.02 Total: 8.67 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.19 Total: -8.45 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.05 Total: -48.56 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.69 Total: -15.02 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.53 -7.69 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.994 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds