Wall clock time and date at job start Tue Mar 31 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47257 * 2 1 4 4 C 1.34230 * 117.00064 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00091 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99828 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46809 * 299.99838 * 6 4 3 8 8 N 1.46901 * 109.46848 * 180.02562 * 6 4 3 9 9 C 1.46900 * 110.99633 * 157.65878 * 8 6 4 10 10 H 1.09000 * 109.47751 * 34.05980 * 9 8 6 11 11 C 1.50699 * 109.46997 * 154.06406 * 9 8 6 12 12 H 1.07997 * 120.00444 * 3.88247 * 11 9 8 13 13 C 1.37881 * 119.99916 * 183.89057 * 11 9 8 14 14 N 1.31515 * 120.00046 * 8.82773 * 13 11 9 15 15 Si 1.86800 * 119.99799 * 188.56152 * 13 11 9 16 16 H 1.48497 * 109.47585 * 89.99630 * 15 13 11 17 17 H 1.48500 * 109.46781 * 209.99778 * 15 13 11 18 18 H 1.48495 * 109.47070 * 329.99378 * 15 13 11 19 19 C 1.53007 * 109.47002 * 274.05879 * 9 8 6 20 20 C 1.53002 * 109.47063 * 295.32868 * 19 9 8 21 21 C 1.50699 * 109.47181 * 60.00044 * 6 4 3 22 22 C 1.38680 * 120.41898 * 259.71928 * 21 6 4 23 23 C 1.38620 * 118.42000 * 179.78262 * 22 21 6 24 24 C 1.38229 * 119.16208 * 0.51464 * 23 22 21 25 25 N 1.31852 * 120.76256 * 359.72686 * 24 23 22 26 26 C 1.31886 * 121.72710 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47229 * 300.00215 * 1 2 3 28 28 H 1.08995 * 109.47346 * 60.00301 * 1 2 3 29 29 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47229 * 239.99785 * 2 1 3 31 31 H 1.09002 * 109.47193 * 120.00070 * 2 1 3 32 32 H 1.00892 * 110.99991 * 33.70314 * 8 6 4 33 33 H 0.97001 * 120.00005 * 3.08820 * 14 13 11 34 34 H 1.09002 * 109.46920 * 55.32897 * 19 9 8 35 35 H 1.08999 * 109.46904 * 175.32798 * 19 9 8 36 36 H 1.09003 * 109.46854 * 185.38198 * 20 19 9 37 37 H 1.08998 * 109.47081 * 305.38881 * 20 19 9 38 38 H 1.09006 * 109.46884 * 65.38672 * 20 19 9 39 39 H 1.08004 * 120.78423 * 0.02621 * 22 21 6 40 40 H 1.08001 * 120.42108 * 180.22279 * 23 22 21 41 41 H 1.07999 * 119.61765 * 179.74699 * 24 23 22 42 42 H 1.07996 * 119.61853 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8905 8 7 5.3877 2.8605 0.0001 9 6 5.9798 4.0994 -0.5217 10 1 5.3588 4.9480 -0.2347 11 6 7.3637 4.2740 0.0489 12 1 7.7878 3.5078 0.6809 13 6 8.0883 5.4119 -0.2359 14 7 7.5141 6.4188 -0.8572 15 14 9.8835 5.5263 0.2675 16 1 10.7393 5.0068 -0.8292 17 1 10.2323 6.9442 0.5382 18 1 10.1062 4.7191 1.4938 19 6 6.0634 4.0216 -2.0475 20 6 7.0275 2.9034 -2.4490 21 6 3.4557 3.6738 1.2298 22 6 2.4074 4.5784 1.1521 23 6 2.0105 5.2293 2.3098 24 6 2.6751 4.9651 3.4927 25 7 3.6713 4.1021 3.5283 26 6 4.0719 3.4603 2.4480 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7078 2.0588 -0.5222 33 1 6.5698 6.3792 -1.0753 34 1 5.0744 3.8125 -2.4553 35 1 6.4251 4.9718 -2.4405 36 1 7.1609 2.9098 -3.5308 37 1 7.9902 3.0619 -1.9632 38 1 6.6180 1.9419 -2.1391 39 1 1.9095 4.7682 0.2126 40 1 1.1954 5.9375 2.2870 41 1 2.3747 5.4711 4.3983 42 1 4.8914 2.7602 2.5161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:01 Heat of formation + Delta-G solvation = -72.643280 kcal Electronic energy + Delta-G solvation = -24204.103778 eV Core-core repulsion = 20762.371857 eV Total energy + Delta-G solvation = -3441.731921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.01803 -40.86539 -38.83099 -37.65913 -35.45355 -33.61533 -32.93131 -32.57224 -31.36757 -28.79931 -26.82368 -25.53488 -24.54621 -24.43926 -23.42457 -22.03904 -21.18049 -19.40803 -18.47297 -18.22233 -17.78474 -17.74318 -17.22298 -16.29762 -15.88084 -15.71945 -15.39410 -15.13103 -15.03623 -14.77513 -14.48723 -14.24338 -13.97584 -13.92343 -13.75353 -13.56795 -13.12298 -12.97880 -12.69180 -12.62233 -12.51238 -12.17285 -12.01627 -11.95053 -11.79872 -11.71199 -11.60666 -10.77202 -10.68257 -10.44076 -10.35547 -9.93575 -9.27981 -8.50353 -6.17767 0.11468 0.35161 0.96357 1.45347 1.55699 1.62375 1.80035 2.59279 2.84205 3.25866 3.29889 3.42843 3.62051 3.77602 3.90444 3.95747 4.02936 4.05805 4.13239 4.28492 4.29816 4.33052 4.35297 4.49827 4.62735 4.75595 4.86217 4.88210 4.90021 5.02793 5.06116 5.16476 5.17072 5.27805 5.31924 5.38203 5.54354 5.77312 5.89143 6.18242 6.42721 6.52373 6.60847 6.76808 7.04948 7.54281 8.86668 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.005568 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.288901 B = 5027.813261 C = 6181.155768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.352 6.352 4 C 0.475 3.525 5 O -0.519 6.519 6 C 0.142 3.858 7 H 0.091 0.909 8 N -0.664 5.664 9 C 0.218 3.782 10 H 0.004 0.996 11 C -0.572 4.572 12 H 0.041 0.959 13 C -0.020 4.020 14 N -0.935 5.935 15 Si 1.104 2.896 16 H -0.274 1.274 17 H -0.289 1.289 18 H -0.280 1.280 19 C -0.146 4.146 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.065 4.065 23 C -0.166 4.166 24 C 0.087 3.913 25 N -0.517 5.517 26 C 0.120 3.880 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.346 0.654 33 H 0.258 0.742 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.157 0.843 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 -7.341 1.009 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.268 6.268 4 C 0.318 3.682 5 O -0.407 6.407 6 C 0.030 3.970 7 H 0.108 0.892 8 N -0.299 5.299 9 C 0.110 3.890 10 H 0.022 0.978 11 C -0.611 4.611 12 H 0.060 0.940 13 C -0.219 4.219 14 N -0.573 5.573 15 Si 0.928 3.072 16 H -0.199 1.199 17 H -0.215 1.215 18 H -0.206 1.206 19 C -0.185 4.185 20 C -0.184 4.184 21 C -0.139 4.139 22 C -0.091 4.091 23 C -0.186 4.186 24 C -0.070 4.070 25 N -0.226 5.226 26 C -0.037 4.037 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.169 0.831 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.175 0.825 40 H 0.193 0.807 41 H 0.202 0.798 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.661 -6.702 2.396 16.298 hybrid contribution -1.504 -0.984 -1.710 2.481 sum -16.165 -7.686 0.685 17.912 Atomic orbital electron populations 1.21813 0.89835 1.04551 1.03781 1.23384 0.97469 0.78892 1.02587 1.86503 1.22821 1.34118 1.83398 1.23531 0.81291 0.91804 0.71588 1.90635 1.61013 1.43102 1.45978 1.19871 0.90968 0.88872 0.97251 0.89180 1.60645 1.01380 1.06941 1.60954 1.19114 0.94149 0.86271 0.89484 0.97847 1.21971 1.00820 1.05974 1.32303 0.94038 1.26766 1.08592 0.91901 0.94655 1.70887 1.13182 1.32374 1.40879 0.83072 0.71642 0.75806 0.76653 1.19945 1.21456 1.20568 1.22108 0.97532 0.99401 0.99508 1.21520 1.00198 0.97061 0.99629 1.20404 0.98520 1.00172 0.94783 1.21807 0.93881 0.92722 1.00720 1.22461 1.02368 1.01305 0.92430 1.23424 0.90571 0.93330 0.99646 1.67724 1.14647 1.08695 1.31531 1.22450 0.96659 0.96571 0.87982 0.91473 0.90912 0.87845 0.90946 0.91719 0.83150 0.93114 0.93972 0.93544 0.92998 0.93056 0.93493 0.82504 0.80699 0.79791 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.05 1.06 6.19 71.98 0.45 1.50 16 3 O -0.35 -9.68 10.14 -51.42 -0.52 -10.20 16 4 C 0.48 15.82 7.26 71.24 0.52 16.34 16 5 O -0.52 -19.60 15.45 21.98 0.34 -19.26 16 6 C 0.14 5.02 2.57 43.42 0.11 5.13 16 7 H 0.09 2.97 7.06 -2.38 -0.02 2.96 16 8 N -0.66 -28.02 5.16 -481.02 -2.48 -30.50 16 9 C 0.22 10.43 1.77 44.17 0.08 10.51 16 10 H 0.00 0.19 6.88 -2.39 -0.02 0.18 16 11 C -0.57 -31.21 7.21 25.60 0.18 -31.03 16 12 H 0.04 2.36 7.83 -2.91 -0.02 2.34 16 13 C -0.02 -1.13 5.23 84.66 0.44 -0.69 16 14 N -0.94 -54.81 12.93 21.45 0.28 -54.53 16 15 Si 1.10 50.86 29.91 68.60 2.05 52.92 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 C -0.15 -6.39 5.46 30.60 0.17 -6.22 16 20 C -0.13 -5.14 9.40 71.98 0.68 -4.46 16 21 C -0.14 -4.70 4.40 -19.77 -0.09 -4.79 16 22 C -0.07 -1.79 9.82 22.47 0.22 -1.57 16 23 C -0.17 -3.91 10.11 22.36 0.23 -3.68 16 24 C 0.09 2.38 11.18 84.69 0.95 3.32 16 25 N -0.52 -18.59 10.36 -195.85 -2.03 -20.62 16 26 C 0.12 4.62 10.49 84.67 0.89 5.51 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.35 14.64 5.43 -89.70 -0.49 14.15 16 33 H 0.26 15.18 6.08 -92.71 -0.56 14.61 16 34 H 0.04 1.62 7.42 -2.39 -0.02 1.60 16 35 H 0.05 2.27 6.37 -2.39 -0.02 2.26 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 2.32 6.88 -2.39 -0.02 2.31 16 38 H 0.05 1.76 6.63 -2.38 -0.02 1.74 16 39 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.19 3.57 8.06 -2.91 -0.02 3.54 16 42 H 0.14 5.83 7.73 -2.91 -0.02 5.81 16 Total: -1.00 -68.13 347.96 3.93 -64.19 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.74 Total: 29.32 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.56 Total: -11.32 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.23 Total: -105.65 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.18 Total: -29.46 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.92 kcal Total: -68.13 3.93 -64.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.449 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds