Wall clock time and date at job start Tue Mar 31 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47178 * 2 1 4 4 H 1.08996 * 109.46897 * 301.00203 * 3 2 1 5 5 C 1.50699 * 109.47022 * 180.99544 * 3 2 1 6 6 H 1.07996 * 120.00246 * 239.99925 * 5 3 2 7 7 C 1.37880 * 119.99705 * 60.00480 * 5 3 2 8 8 N 1.31508 * 120.00354 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99705 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47360 * 59.99881 * 9 7 5 11 11 H 1.48501 * 109.47169 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47230 * 299.99757 * 9 7 5 13 13 N 1.46904 * 109.46924 * 60.99555 * 3 2 1 14 14 C 1.46887 * 111.00352 * 258.16445 * 13 3 2 15 15 H 1.09000 * 109.47252 * 351.95891 * 14 13 3 16 16 C 1.53004 * 109.47415 * 231.96226 * 14 13 3 17 17 C 1.50691 * 109.47110 * 57.08302 * 16 14 13 18 18 O 1.20832 * 120.00259 * 6.08814 * 17 16 14 19 19 O 1.34233 * 120.00127 * 186.08415 * 17 16 14 20 20 C 1.45198 * 117.00004 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47498 * 111.95815 * 14 13 3 22 22 C 1.38227 * 119.62225 * 204.42269 * 21 14 13 23 23 C 1.38631 * 119.15996 * 179.75513 * 22 21 14 24 24 C 1.38671 * 118.41997 * 0.50795 * 23 22 21 25 25 C 1.38177 * 119.16319 * 359.73452 * 24 23 22 26 26 N 1.31859 * 119.61604 * 24.69808 * 21 14 13 27 27 H 1.08996 * 109.47398 * 51.82944 * 1 2 3 28 28 H 1.09005 * 109.47301 * 291.82520 * 1 2 3 29 29 H 1.08999 * 109.47320 * 171.82917 * 1 2 3 30 30 H 1.09007 * 109.47136 * 120.00118 * 2 1 3 31 31 H 1.08997 * 109.47243 * 239.99803 * 2 1 3 32 32 H 0.96996 * 120.00329 * 180.02562 * 8 7 5 33 33 H 1.00907 * 110.99541 * 134.20691 * 13 3 2 34 34 H 1.09005 * 109.47043 * 177.08795 * 16 14 13 35 35 H 1.09001 * 109.46855 * 297.08415 * 16 14 13 36 36 H 1.09000 * 109.47605 * 300.00383 * 20 19 17 37 37 H 1.09008 * 109.47021 * 60.00352 * 20 19 17 38 38 H 1.09003 * 109.47141 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.41820 * 359.97438 * 22 21 14 40 40 H 1.08000 * 120.78634 * 180.22091 * 23 22 21 41 41 H 1.08000 * 120.41722 * 179.71153 * 24 23 22 42 42 H 1.08003 * 119.61734 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6621 1.9615 -0.8808 5 6 3.5468 1.4425 -0.0247 6 1 4.1000 1.9055 0.7790 7 6 4.2190 0.8516 -1.0735 8 7 3.5454 0.2875 -2.0520 9 14 6.0867 0.8523 -1.1044 10 1 6.6020 0.1456 0.0957 11 1 6.5618 0.1587 -2.3286 12 1 6.5813 2.2525 -1.1048 13 7 1.5700 2.1280 1.2113 14 6 0.4262 2.9998 0.9127 15 1 0.2777 3.0476 -0.1661 16 6 0.7012 4.4049 1.4523 17 6 1.9792 4.9320 0.8527 18 8 2.5477 4.3022 -0.0077 19 8 2.4861 6.1013 1.2741 20 6 3.7196 6.5477 0.6517 21 6 -0.8129 2.4444 1.5662 22 6 -2.0564 2.7579 1.0503 23 6 -3.1897 2.2375 1.6559 24 6 -3.0297 1.4263 2.7691 25 6 -1.7548 1.1609 3.2312 26 7 -0.6987 1.6693 2.6268 27 1 -0.3634 0.6351 -0.8079 28 1 -0.3634 0.3821 0.9540 29 1 -0.3634 -1.0172 -0.1461 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 4.0183 -0.1286 -2.7896 33 1 2.3177 2.6483 1.6454 34 1 -0.1246 5.0646 1.1856 35 1 0.7984 4.3648 2.5372 36 1 4.5024 5.8094 0.8258 37 1 3.5634 6.6658 -0.4207 38 1 4.0187 7.5034 1.0823 39 1 -2.1438 3.3972 0.1843 40 1 -4.1740 2.4625 1.2726 41 1 -3.8907 1.0075 3.2688 42 1 -1.6217 0.5296 4.0974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:03 Heat of formation + Delta-G solvation = -35.544147 kcal Electronic energy + Delta-G solvation = -24582.423134 eV Core-core repulsion = 21142.299952 eV Total energy + Delta-G solvation = -3440.123181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40891 -39.76343 -36.91854 -35.61543 -33.60383 -32.12167 -31.37563 -30.55518 -29.35755 -27.38977 -26.01511 -24.26569 -23.20027 -22.47786 -21.34919 -19.97941 -19.27816 -17.39678 -16.72159 -16.38474 -16.21509 -15.98240 -15.80633 -15.13805 -14.69869 -14.15544 -13.89951 -13.60609 -13.35248 -13.02177 -12.98445 -12.68811 -12.36142 -12.34367 -11.81390 -11.74904 -11.54965 -11.22850 -11.17772 -10.88965 -10.68631 -10.59767 -10.45518 -10.03401 -9.96221 -9.63695 -9.48562 -9.23878 -8.92312 -8.72157 -8.58629 -8.22700 -7.11975 -5.83615 -3.86094 1.35352 1.56745 2.64125 2.98908 3.40232 3.43672 3.46669 4.09826 4.53950 4.64334 4.83284 4.95116 5.03928 5.18810 5.27462 5.31140 5.36572 5.38449 5.43539 5.47642 5.60996 5.76871 5.77806 5.92166 5.96751 6.20933 6.36625 6.39302 6.49090 6.59890 6.72421 6.81983 6.95029 7.22728 7.35708 7.62181 7.72706 7.95463 8.14058 8.18149 8.40073 8.42889 8.57589 8.83830 9.20976 9.75718 11.22406 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.006570 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.411908 B = 4260.942117 C = 5918.683186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C 0.230 3.770 4 H 0.013 0.987 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.281 1.281 13 N -0.656 5.656 14 C 0.143 3.857 15 H 0.080 0.920 16 C -0.119 4.119 17 C 0.438 3.562 18 O -0.452 6.452 19 O -0.370 6.370 20 C 0.037 3.963 21 C 0.161 3.839 22 C -0.179 4.179 23 C -0.079 4.079 24 C -0.189 4.189 25 C 0.094 3.906 26 N -0.434 5.434 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.258 0.742 33 H 0.331 0.669 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.027 9.299 7.657 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C 0.122 3.878 4 H 0.031 0.969 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.207 1.207 13 N -0.287 5.287 14 C 0.030 3.970 15 H 0.098 0.902 16 C -0.158 4.158 17 C 0.277 3.723 18 O -0.334 6.334 19 O -0.288 6.288 20 C -0.056 4.056 21 C 0.023 3.977 22 C -0.200 4.200 23 C -0.105 4.105 24 C -0.209 4.209 25 C -0.064 4.064 26 N -0.142 5.142 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.306 8.286 7.709 15.307 hybrid contribution 0.657 0.807 -1.049 1.478 sum -9.649 9.093 6.660 14.837 Atomic orbital electron populations 1.22021 1.00060 0.98144 1.00478 1.21511 0.91175 0.99902 1.01488 1.19158 0.93474 0.90194 0.84947 0.96910 1.21232 0.91209 1.35104 1.06039 0.93063 1.24833 0.97784 0.95665 0.95648 1.69875 1.34755 1.38279 1.10406 0.86701 0.86513 0.77839 0.77086 1.20488 1.21531 1.20661 1.60662 1.08374 1.29631 1.30045 1.20384 0.91209 0.87873 0.97546 0.90198 1.21784 0.93119 0.97741 1.03139 1.23709 0.87235 0.79256 0.82056 1.91005 1.58747 1.55615 1.28036 1.86449 1.40516 1.38725 1.63115 1.23178 0.84195 0.99936 0.98337 1.21339 0.93435 0.91865 0.91104 1.21950 0.93341 1.02783 1.01914 1.21423 0.98634 0.95551 0.94880 1.22063 0.99052 1.01219 0.98565 1.22858 0.88050 0.96960 0.98500 1.67653 1.32503 1.06539 1.07553 0.95285 0.92331 0.96130 0.94647 0.89768 0.93248 0.84959 0.88014 0.87537 0.91658 0.92138 0.88779 0.85341 0.85512 0.85600 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.78 37.16 0.33 -2.99 16 2 C -0.10 -2.62 5.43 -26.73 -0.15 -2.76 16 3 C 0.23 5.91 1.31 -68.86 -0.09 5.82 16 4 H 0.01 0.38 6.89 -51.93 -0.36 0.02 16 5 C -0.50 -14.05 7.88 -34.44 -0.27 -14.32 16 6 H 0.05 1.46 7.40 -52.49 -0.39 1.07 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -26.49 11.31 55.43 0.63 -25.87 16 9 Si 0.89 22.31 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.66 -14.21 5.13 -102.18 -0.52 -14.73 16 14 C 0.14 2.54 1.64 -68.87 -0.11 2.42 16 15 H 0.08 1.57 6.87 -51.93 -0.36 1.21 16 16 C -0.12 -1.73 5.31 -27.89 -0.15 -1.87 16 17 C 0.44 7.42 7.17 36.00 0.26 7.68 16 18 O -0.45 -9.69 13.06 -18.75 -0.24 -9.94 16 19 O -0.37 -5.51 10.57 -39.26 -0.41 -5.93 16 20 C 0.04 0.48 10.56 101.05 1.07 1.55 16 21 C 0.16 2.60 3.67 -82.59 -0.30 2.30 16 22 C -0.18 -2.41 9.77 -39.44 -0.39 -2.79 16 23 C -0.08 -0.91 10.18 -39.28 -0.40 -1.31 16 24 C -0.19 -2.17 10.11 -39.44 -0.40 -2.57 16 25 C 0.09 1.28 11.17 -17.55 -0.20 1.09 16 26 N -0.43 -7.30 8.32 -9.48 -0.08 -7.38 16 27 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.06 1.22 4.09 -51.93 -0.21 1.01 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 2.39 6.04 -51.93 -0.31 2.08 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 33 H 0.33 7.37 6.00 -39.29 -0.24 7.14 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -32.99 340.46 -7.49 -40.48 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.07 Total: 7.03 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.89 Total: -6.09 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.02 Total: -47.98 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.66 Total: -15.87 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.99 -7.49 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.940 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds