Wall clock time and date at job start Tue Mar 31 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47178 * 2 1 4 4 H 1.08996 * 109.46897 * 301.00203 * 3 2 1 5 5 C 1.50699 * 109.47022 * 180.99544 * 3 2 1 6 6 H 1.07996 * 120.00246 * 239.99925 * 5 3 2 7 7 C 1.37880 * 119.99705 * 60.00480 * 5 3 2 8 8 N 1.31508 * 120.00354 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99705 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47360 * 59.99881 * 9 7 5 11 11 H 1.48501 * 109.47169 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47230 * 299.99757 * 9 7 5 13 13 N 1.46904 * 109.46924 * 60.99555 * 3 2 1 14 14 C 1.46887 * 111.00352 * 258.16445 * 13 3 2 15 15 H 1.09000 * 109.47252 * 351.95891 * 14 13 3 16 16 C 1.53004 * 109.47415 * 231.96226 * 14 13 3 17 17 C 1.50691 * 109.47110 * 57.08302 * 16 14 13 18 18 O 1.20832 * 120.00259 * 6.08814 * 17 16 14 19 19 O 1.34233 * 120.00127 * 186.08415 * 17 16 14 20 20 C 1.45198 * 117.00004 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47498 * 111.95815 * 14 13 3 22 22 C 1.38227 * 119.62225 * 204.42269 * 21 14 13 23 23 C 1.38631 * 119.15996 * 179.75513 * 22 21 14 24 24 C 1.38671 * 118.41997 * 0.50795 * 23 22 21 25 25 C 1.38177 * 119.16319 * 359.73452 * 24 23 22 26 26 N 1.31859 * 119.61604 * 24.69808 * 21 14 13 27 27 H 1.08996 * 109.47398 * 51.82944 * 1 2 3 28 28 H 1.09005 * 109.47301 * 291.82520 * 1 2 3 29 29 H 1.08999 * 109.47320 * 171.82917 * 1 2 3 30 30 H 1.09007 * 109.47136 * 120.00118 * 2 1 3 31 31 H 1.08997 * 109.47243 * 239.99803 * 2 1 3 32 32 H 0.96996 * 120.00329 * 180.02562 * 8 7 5 33 33 H 1.00907 * 110.99541 * 134.20691 * 13 3 2 34 34 H 1.09005 * 109.47043 * 177.08795 * 16 14 13 35 35 H 1.09001 * 109.46855 * 297.08415 * 16 14 13 36 36 H 1.09000 * 109.47605 * 300.00383 * 20 19 17 37 37 H 1.09008 * 109.47021 * 60.00352 * 20 19 17 38 38 H 1.09003 * 109.47141 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.41820 * 359.97438 * 22 21 14 40 40 H 1.08000 * 120.78634 * 180.22091 * 23 22 21 41 41 H 1.08000 * 120.41722 * 179.71153 * 24 23 22 42 42 H 1.08003 * 119.61734 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6621 1.9615 -0.8808 5 6 3.5468 1.4425 -0.0247 6 1 4.1000 1.9055 0.7790 7 6 4.2190 0.8516 -1.0735 8 7 3.5454 0.2875 -2.0520 9 14 6.0867 0.8523 -1.1044 10 1 6.6020 0.1456 0.0957 11 1 6.5618 0.1587 -2.3286 12 1 6.5813 2.2525 -1.1048 13 7 1.5700 2.1280 1.2113 14 6 0.4262 2.9998 0.9127 15 1 0.2777 3.0476 -0.1661 16 6 0.7012 4.4049 1.4523 17 6 1.9792 4.9320 0.8527 18 8 2.5477 4.3022 -0.0077 19 8 2.4861 6.1013 1.2741 20 6 3.7196 6.5477 0.6517 21 6 -0.8129 2.4444 1.5662 22 6 -2.0564 2.7579 1.0503 23 6 -3.1897 2.2375 1.6559 24 6 -3.0297 1.4263 2.7691 25 6 -1.7548 1.1609 3.2312 26 7 -0.6987 1.6693 2.6268 27 1 -0.3634 0.6351 -0.8079 28 1 -0.3634 0.3821 0.9540 29 1 -0.3634 -1.0172 -0.1461 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 4.0183 -0.1286 -2.7896 33 1 2.3177 2.6483 1.6454 34 1 -0.1246 5.0646 1.1856 35 1 0.7984 4.3648 2.5372 36 1 4.5024 5.8094 0.8258 37 1 3.5634 6.6658 -0.4207 38 1 4.0187 7.5034 1.0823 39 1 -2.1438 3.3972 0.1843 40 1 -4.1740 2.4625 1.2726 41 1 -3.8907 1.0075 3.2688 42 1 -1.6217 0.5296 4.0974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:02 Heat of formation + Delta-G solvation = -57.195754 kcal Electronic energy + Delta-G solvation = -24583.362018 eV Core-core repulsion = 21142.299952 eV Total energy + Delta-G solvation = -3441.062066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70205 -40.90886 -38.39912 -37.16744 -35.32717 -33.41799 -33.11264 -31.83399 -30.86055 -28.74398 -27.75890 -25.59305 -24.61079 -24.04551 -22.56208 -21.35340 -21.22022 -18.77628 -18.53586 -17.56744 -17.46567 -17.34126 -16.98114 -16.67782 -16.17955 -15.79382 -15.34903 -14.90514 -14.83550 -14.50879 -14.22992 -14.03039 -13.95309 -13.61309 -13.43688 -13.18428 -12.98916 -12.95062 -12.69027 -12.56702 -12.46471 -12.38688 -12.01296 -11.71963 -11.58501 -11.40125 -11.26719 -10.79466 -10.55109 -10.41136 -9.99419 -9.68846 -8.90790 -8.03512 -6.13171 0.33775 0.60805 1.29805 1.36611 1.39299 1.45995 1.80007 2.43829 3.04683 3.22842 3.51179 3.54672 3.69796 4.08051 4.17287 4.20959 4.32120 4.34232 4.37440 4.38982 4.46605 4.54324 4.61690 4.68680 4.71560 4.85059 4.88022 4.91677 5.01318 5.20952 5.37026 5.39237 5.43348 5.45784 5.56500 5.71770 5.76255 5.98872 6.06063 6.32643 6.52518 6.81762 6.89356 7.11042 7.42300 7.52435 9.00829 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.006570 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.411908 B = 4260.942117 C = 5918.683186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C 0.246 3.754 4 H -0.025 1.025 5 C -0.509 4.509 6 H 0.042 0.958 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.653 5.653 14 C 0.144 3.856 15 H 0.054 0.946 16 C -0.109 4.109 17 C 0.441 3.559 18 O -0.506 6.506 19 O -0.363 6.363 20 C 0.032 3.968 21 C 0.138 3.862 22 C -0.183 4.183 23 C -0.075 4.075 24 C -0.175 4.175 25 C 0.077 3.923 26 N -0.474 5.474 27 H 0.024 0.976 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.020 0.980 31 H 0.053 0.947 32 H 0.257 0.743 33 H 0.324 0.676 34 H 0.140 0.860 35 H 0.120 0.880 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 10.249 9.115 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C 0.138 3.862 4 H -0.008 1.008 5 C -0.548 4.548 6 H 0.061 0.939 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.282 5.282 14 C 0.032 3.968 15 H 0.072 0.928 16 C -0.147 4.147 17 C 0.284 3.716 18 O -0.392 6.392 19 O -0.280 6.280 20 C -0.061 4.061 21 C 0.000 4.000 22 C -0.203 4.203 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.080 4.080 26 N -0.183 5.183 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.301 9.264 9.196 17.936 hybrid contribution 1.186 0.575 -1.446 1.956 sum -11.115 9.838 7.750 16.745 Atomic orbital electron populations 1.21870 0.97188 0.98897 1.01347 1.21332 0.93750 0.99312 0.99038 1.18774 0.92129 0.90170 0.85141 1.00752 1.21523 0.92808 1.34662 1.05791 0.93943 1.25602 1.02226 0.95503 0.95427 1.70018 1.36270 1.38959 1.10853 0.85729 0.81294 0.77880 0.77361 1.19761 1.20882 1.20357 1.60591 1.08891 1.30898 1.27830 1.20321 0.90566 0.89281 0.96655 0.92777 1.21787 0.93104 0.96446 1.03407 1.24207 0.87407 0.79101 0.80919 1.90997 1.60413 1.57203 1.30606 1.86452 1.41154 1.37621 1.62784 1.23427 0.82845 1.01272 0.98557 1.20986 0.93297 0.93595 0.92105 1.22134 0.92920 1.02977 1.02296 1.21862 0.99470 0.94382 0.94316 1.22447 0.99230 0.99808 0.97983 1.23249 0.88460 0.97223 0.99072 1.67505 1.34636 1.07699 1.08441 0.95637 0.90618 0.94935 0.96161 0.92882 0.93349 0.85812 0.84216 0.86146 0.93390 0.92597 0.84489 0.83914 0.81956 0.82051 0.81683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 8.78 71.98 0.63 -5.44 16 2 C -0.10 -5.10 5.43 30.59 0.17 -4.93 16 3 C 0.25 13.30 1.31 44.17 0.06 13.36 16 4 H -0.03 -1.53 6.89 -2.39 -0.02 -1.55 16 5 C -0.51 -30.01 7.88 25.60 0.20 -29.81 16 6 H 0.04 2.51 7.40 -2.91 -0.02 2.49 16 7 C 0.01 0.60 5.30 84.66 0.45 1.05 16 8 N -0.92 -56.64 11.31 21.45 0.24 -56.40 16 9 Si 0.95 46.97 29.54 68.60 2.03 49.00 16 10 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 N -0.65 -29.25 5.13 -477.18 -2.45 -31.69 16 14 C 0.14 5.18 1.64 44.17 0.07 5.26 16 15 H 0.05 2.22 6.87 -2.39 -0.02 2.21 16 16 C -0.11 -3.09 5.31 29.85 0.16 -2.93 16 17 C 0.44 15.12 7.17 71.23 0.51 15.63 16 18 O -0.51 -22.71 13.06 21.95 0.29 -22.42 16 19 O -0.36 -10.53 10.57 -51.44 -0.54 -11.08 16 20 C 0.03 0.81 10.56 113.37 1.20 2.01 16 21 C 0.14 4.31 3.67 42.55 0.16 4.47 16 22 C -0.18 -4.46 9.77 22.36 0.22 -4.24 16 23 C -0.07 -1.41 10.18 22.47 0.23 -1.18 16 24 C -0.18 -3.30 10.11 22.36 0.23 -3.07 16 25 C 0.08 1.92 11.17 84.67 0.95 2.87 16 26 N -0.47 -15.37 8.32 -183.89 -1.53 -16.90 16 27 H 0.02 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.08 3.15 4.09 -2.38 -0.01 3.14 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 3.16 6.04 -2.39 -0.01 3.14 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.32 15.02 6.00 -89.69 -0.54 14.48 16 34 H 0.14 2.88 8.14 -2.38 -0.02 2.86 16 35 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 37 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -75.57 340.46 3.74 -71.83 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.48 Total: 24.64 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.22 Total: -6.97 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -3.74 Total: -105.00 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.26 Total: -33.50 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -75.57 3.74 -71.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.637 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds