Wall clock time and date at job start Tue Mar 31 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47147 * 2 1 4 4 H 1.08999 * 109.46946 * 55.43903 * 3 2 1 5 5 C 1.50698 * 109.47171 * 175.43612 * 3 2 1 6 6 H 1.08003 * 119.99768 * 119.99986 * 5 3 2 7 7 C 1.37871 * 120.00054 * 300.00060 * 5 3 2 8 8 N 1.31511 * 120.00398 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99722 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47475 * 59.99689 * 9 7 5 11 11 H 1.48502 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46786 * 300.00068 * 9 7 5 13 13 N 1.46899 * 109.46902 * 295.44276 * 3 2 1 14 14 C 1.46898 * 111.00277 * 98.19515 * 13 3 2 15 15 H 1.08999 * 109.46899 * 309.21162 * 14 13 3 16 16 C 1.53005 * 109.46985 * 189.21785 * 14 13 3 17 17 C 1.50700 * 109.47207 * 64.05040 * 16 14 13 18 18 O 1.20824 * 120.00075 * 0.37406 * 17 16 14 19 19 O 1.34227 * 119.99812 * 180.37634 * 17 16 14 20 20 C 1.45195 * 117.00240 * 175.05336 * 19 17 16 21 21 C 1.50691 * 109.47420 * 69.21365 * 14 13 3 22 22 C 1.38238 * 119.61645 * 204.73092 * 21 14 13 23 23 C 1.38625 * 119.15697 * 179.75645 * 22 21 14 24 24 C 1.38677 * 118.42403 * 0.50269 * 23 22 21 25 25 C 1.38186 * 119.15927 * 359.73689 * 24 23 22 26 26 N 1.31854 * 119.62284 * 24.99900 * 21 14 13 27 27 H 1.09003 * 109.47645 * 305.15199 * 1 2 3 28 28 H 1.09005 * 109.47254 * 65.14761 * 1 2 3 29 29 H 1.08994 * 109.47220 * 185.14799 * 1 2 3 30 30 H 1.08994 * 109.47423 * 240.00149 * 2 1 3 31 31 H 1.09001 * 109.47158 * 119.99295 * 2 1 3 32 32 H 0.97005 * 120.00155 * 179.97438 * 8 7 5 33 33 H 1.00903 * 110.99600 * 222.14350 * 13 3 2 34 34 H 1.09000 * 109.46763 * 184.05346 * 16 14 13 35 35 H 1.09001 * 109.46802 * 304.04846 * 16 14 13 36 36 H 1.09001 * 109.46815 * 304.86734 * 20 19 17 37 37 H 1.08996 * 109.47282 * 64.86665 * 20 19 17 38 38 H 1.09007 * 109.47579 * 184.87020 * 20 19 17 39 39 H 1.08000 * 120.41824 * 359.97438 * 22 21 14 40 40 H 1.07996 * 120.78826 * 180.21552 * 23 22 21 41 41 H 1.07997 * 120.42106 * 179.71258 * 24 23 22 42 42 H 1.08002 * 119.61335 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6114 1.9794 0.8463 5 6 3.5427 1.4441 0.1131 6 1 4.1424 1.8906 -0.6663 7 6 4.1520 0.8754 1.2114 8 7 3.4218 0.3312 2.1601 9 14 6.0147 0.8780 1.3517 10 1 6.5093 2.2782 1.3520 11 1 6.4168 0.2102 2.6157 12 1 6.5990 0.1469 0.1987 13 7 1.6422 2.1025 -1.2507 14 6 0.4318 2.9121 -1.0569 15 1 -0.3353 2.3083 -0.5721 16 6 -0.0818 3.3946 -2.4151 17 6 -0.5000 2.2079 -3.2445 18 8 -0.4042 1.0913 -2.7929 19 8 -0.9790 2.3914 -4.4848 20 6 -1.2583 1.2002 -5.2666 21 6 0.7565 4.1018 -0.1910 22 6 -0.2468 4.7069 0.5427 23 6 0.0635 5.7976 1.3400 24 6 1.3750 6.2476 1.3617 25 6 2.3234 5.5951 0.5974 26 7 1.9931 4.5571 -0.1460 27 1 -0.3634 0.5917 0.8402 28 1 -0.3634 0.4319 -0.9325 29 1 -0.3633 -1.0235 0.0922 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8505 -0.0693 2.9327 33 1 2.3963 2.6622 -1.6198 34 1 -0.9370 4.0538 -2.2667 35 1 0.7102 3.9375 -2.9309 36 1 -0.3634 0.5800 -5.3160 37 1 -2.0647 0.6377 -4.7961 38 1 -1.5565 1.4887 -6.2746 39 1 -1.2588 4.3324 0.4980 40 1 -0.6990 6.2881 1.9268 41 1 1.6516 7.0976 1.9678 42 1 3.3471 5.9391 0.6090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:06 Heat of formation + Delta-G solvation = -44.973407 kcal Electronic energy + Delta-G solvation = -24469.945930 eV Core-core repulsion = 21029.413865 eV Total energy + Delta-G solvation = -3440.532065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31982 -39.71936 -36.82165 -35.73179 -33.58032 -32.06468 -31.41179 -30.20293 -29.51489 -27.55280 -26.02821 -24.14099 -23.11052 -22.54316 -21.23322 -19.94325 -19.23912 -17.53136 -16.80382 -16.32247 -16.25923 -15.97987 -15.77151 -15.08800 -14.73004 -14.03419 -13.87141 -13.66136 -13.23285 -13.08483 -12.82947 -12.72327 -12.36091 -12.21424 -12.00384 -11.68724 -11.49745 -11.31711 -11.01020 -10.81529 -10.65518 -10.59437 -10.51082 -10.02399 -9.97886 -9.54894 -9.51121 -9.12609 -9.02610 -8.66724 -8.59601 -8.26204 -7.13654 -5.87122 -3.91260 1.41527 1.62179 2.65892 3.00687 3.38171 3.42135 3.45371 4.15395 4.50543 4.62962 4.96729 5.00021 5.12084 5.21381 5.23339 5.31320 5.34247 5.42035 5.43871 5.49838 5.56307 5.72338 5.89307 5.97260 6.08708 6.17997 6.42251 6.45229 6.57042 6.58912 6.75389 6.98767 7.01329 7.28327 7.45861 7.65020 7.75105 7.94299 8.14277 8.28223 8.42288 8.47753 8.55844 8.85743 9.19620 9.71847 11.18216 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.006764 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.745788 B = 4138.283845 C = 5680.703646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C 0.230 3.770 4 H 0.003 0.997 5 C -0.504 4.504 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.660 5.660 14 C 0.142 3.858 15 H 0.102 0.898 16 C -0.098 4.098 17 C 0.457 3.543 18 O -0.462 6.462 19 O -0.373 6.373 20 C 0.038 3.962 21 C 0.113 3.887 22 C -0.174 4.174 23 C -0.079 4.079 24 C -0.186 4.186 25 C 0.108 3.892 26 N -0.452 5.452 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.020 0.980 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.258 0.742 33 H 0.340 0.660 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 10.097 -7.563 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.140 4.140 3 C 0.123 3.877 4 H 0.021 0.979 5 C -0.543 4.543 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.290 5.290 14 C 0.029 3.971 15 H 0.120 0.880 16 C -0.136 4.136 17 C 0.298 3.702 18 O -0.345 6.345 19 O -0.291 6.291 20 C -0.056 4.056 21 C -0.027 4.027 22 C -0.195 4.195 23 C -0.105 4.105 24 C -0.206 4.206 25 C -0.050 4.050 26 N -0.160 5.160 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.159 0.841 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.585 8.623 -7.993 15.170 hybrid contribution 0.763 1.008 1.412 1.895 sum -8.822 9.630 -6.581 14.625 Atomic orbital electron populations 1.22095 0.99767 0.98504 1.01161 1.21464 0.91656 0.99544 1.01317 1.18960 0.93944 0.90557 0.84283 0.97916 1.21310 0.91457 1.36508 1.04991 0.92515 1.24877 0.97726 0.95584 0.95862 1.69897 1.34623 1.38983 1.09647 0.86686 0.86330 0.77978 0.77085 1.20531 1.21581 1.20384 1.60958 1.05421 1.30600 1.31980 1.20634 0.97741 0.88585 0.90121 0.87993 1.21385 1.02637 0.94532 0.95083 1.23535 0.74521 0.91755 0.80357 1.90667 1.47487 1.25735 1.70644 1.86477 1.76704 1.37945 1.28000 1.23138 1.01541 0.86509 0.94376 1.22359 0.88831 0.95903 0.95644 1.21964 1.00732 0.97603 0.99182 1.21457 0.96550 0.95662 0.96855 1.22054 0.94437 1.02192 1.01892 1.22713 0.99513 0.90793 0.91947 1.67407 1.18997 1.10269 1.19341 0.95633 0.90436 0.96057 0.94664 0.89924 0.93215 0.84135 0.88427 0.87866 0.91863 0.92294 0.88887 0.85351 0.85510 0.85475 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.55 37.15 0.32 -3.25 16 2 C -0.10 -2.62 5.45 -26.73 -0.15 -2.77 16 3 C 0.23 5.88 1.79 -68.86 -0.12 5.76 16 4 H 0.00 0.09 6.94 -51.93 -0.36 -0.27 16 5 C -0.50 -14.07 8.59 -34.44 -0.30 -14.36 16 6 H 0.06 1.58 7.44 -52.48 -0.39 1.19 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -26.29 11.29 55.43 0.63 -25.66 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.66 -14.20 4.81 -102.17 -0.49 -14.69 16 14 C 0.14 2.52 1.40 -68.87 -0.10 2.42 16 15 H 0.10 1.92 5.49 -51.93 -0.29 1.63 16 16 C -0.10 -1.38 5.48 -27.88 -0.15 -1.53 16 17 C 0.46 7.09 7.81 36.01 0.28 7.37 16 18 O -0.46 -8.66 12.25 -18.75 -0.23 -8.89 16 19 O -0.37 -5.03 10.56 -39.25 -0.41 -5.45 16 20 C 0.04 0.41 10.58 101.05 1.07 1.48 16 21 C 0.11 1.97 4.77 -82.59 -0.39 1.57 16 22 C -0.17 -2.56 9.77 -39.44 -0.39 -2.94 16 23 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 24 C -0.19 -2.49 10.11 -39.44 -0.40 -2.89 16 25 C 0.11 1.72 11.18 -17.55 -0.20 1.52 16 26 N -0.45 -8.43 9.01 -9.47 -0.09 -8.52 16 27 H 0.02 0.56 7.99 -51.93 -0.42 0.14 16 28 H 0.08 1.68 3.53 -51.93 -0.18 1.49 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 2.37 5.96 -51.93 -0.31 2.06 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 33 H 0.34 7.49 7.23 -39.29 -0.28 7.21 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.15 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -32.64 341.80 -7.49 -40.14 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.01 Total: 8.35 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.01 Total: -7.42 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.05 Total: -48.87 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.64 Total: -14.33 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.64 -7.49 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.838 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds