Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47147 * 2 1 4 4 H 1.08999 * 109.46946 * 55.43903 * 3 2 1 5 5 C 1.50698 * 109.47171 * 175.43612 * 3 2 1 6 6 H 1.08003 * 119.99768 * 119.99986 * 5 3 2 7 7 C 1.37871 * 120.00054 * 300.00060 * 5 3 2 8 8 N 1.31511 * 120.00398 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99722 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47475 * 59.99689 * 9 7 5 11 11 H 1.48502 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46786 * 300.00068 * 9 7 5 13 13 N 1.46899 * 109.46902 * 295.44276 * 3 2 1 14 14 C 1.46898 * 111.00277 * 98.19515 * 13 3 2 15 15 H 1.08999 * 109.46899 * 309.21162 * 14 13 3 16 16 C 1.53005 * 109.46985 * 189.21785 * 14 13 3 17 17 C 1.50700 * 109.47207 * 64.05040 * 16 14 13 18 18 O 1.20824 * 120.00075 * 0.37406 * 17 16 14 19 19 O 1.34227 * 119.99812 * 180.37634 * 17 16 14 20 20 C 1.45195 * 117.00240 * 175.05336 * 19 17 16 21 21 C 1.50691 * 109.47420 * 69.21365 * 14 13 3 22 22 C 1.38238 * 119.61645 * 204.73092 * 21 14 13 23 23 C 1.38625 * 119.15697 * 179.75645 * 22 21 14 24 24 C 1.38677 * 118.42403 * 0.50269 * 23 22 21 25 25 C 1.38186 * 119.15927 * 359.73689 * 24 23 22 26 26 N 1.31854 * 119.62284 * 24.99900 * 21 14 13 27 27 H 1.09003 * 109.47645 * 305.15199 * 1 2 3 28 28 H 1.09005 * 109.47254 * 65.14761 * 1 2 3 29 29 H 1.08994 * 109.47220 * 185.14799 * 1 2 3 30 30 H 1.08994 * 109.47423 * 240.00149 * 2 1 3 31 31 H 1.09001 * 109.47158 * 119.99295 * 2 1 3 32 32 H 0.97005 * 120.00155 * 179.97438 * 8 7 5 33 33 H 1.00903 * 110.99600 * 222.14350 * 13 3 2 34 34 H 1.09000 * 109.46763 * 184.05346 * 16 14 13 35 35 H 1.09001 * 109.46802 * 304.04846 * 16 14 13 36 36 H 1.09001 * 109.46815 * 304.86734 * 20 19 17 37 37 H 1.08996 * 109.47282 * 64.86665 * 20 19 17 38 38 H 1.09007 * 109.47579 * 184.87020 * 20 19 17 39 39 H 1.08000 * 120.41824 * 359.97438 * 22 21 14 40 40 H 1.07996 * 120.78826 * 180.21552 * 23 22 21 41 41 H 1.07997 * 120.42106 * 179.71258 * 24 23 22 42 42 H 1.08002 * 119.61335 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6114 1.9794 0.8463 5 6 3.5427 1.4441 0.1131 6 1 4.1424 1.8906 -0.6663 7 6 4.1520 0.8754 1.2114 8 7 3.4218 0.3312 2.1601 9 14 6.0147 0.8780 1.3517 10 1 6.5093 2.2782 1.3520 11 1 6.4168 0.2102 2.6157 12 1 6.5990 0.1469 0.1987 13 7 1.6422 2.1025 -1.2507 14 6 0.4318 2.9121 -1.0569 15 1 -0.3353 2.3083 -0.5721 16 6 -0.0818 3.3946 -2.4151 17 6 -0.5000 2.2079 -3.2445 18 8 -0.4042 1.0913 -2.7929 19 8 -0.9790 2.3914 -4.4848 20 6 -1.2583 1.2002 -5.2666 21 6 0.7565 4.1018 -0.1910 22 6 -0.2468 4.7069 0.5427 23 6 0.0635 5.7976 1.3400 24 6 1.3750 6.2476 1.3617 25 6 2.3234 5.5951 0.5974 26 7 1.9931 4.5571 -0.1460 27 1 -0.3634 0.5917 0.8402 28 1 -0.3634 0.4319 -0.9325 29 1 -0.3633 -1.0235 0.0922 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8505 -0.0693 2.9327 33 1 2.3963 2.6622 -1.6198 34 1 -0.9370 4.0538 -2.2667 35 1 0.7102 3.9375 -2.9309 36 1 -0.3634 0.5800 -5.3160 37 1 -2.0647 0.6377 -4.7961 38 1 -1.5565 1.4887 -6.2746 39 1 -1.2588 4.3324 0.4980 40 1 -0.6990 6.2881 1.9268 41 1 1.6516 7.0976 1.9678 42 1 3.3471 5.9391 0.6090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = -65.972784 kcal Electronic energy + Delta-G solvation = -24470.856532 eV Core-core repulsion = 21029.413865 eV Total energy + Delta-G solvation = -3441.442666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54311 -40.88808 -38.30055 -37.11467 -35.30303 -33.40678 -33.20496 -31.44083 -31.11968 -28.80821 -27.69730 -25.50109 -24.57150 -24.13449 -22.48403 -21.29133 -21.15820 -18.87694 -18.41540 -17.68167 -17.41550 -17.27758 -16.98853 -16.65017 -16.24189 -15.71735 -15.27547 -14.93139 -14.66696 -14.53084 -14.08613 -13.94851 -13.89407 -13.70501 -13.52857 -13.13557 -12.91612 -12.87674 -12.67848 -12.55237 -12.49952 -12.25387 -11.94769 -11.61045 -11.54143 -11.42945 -10.95174 -10.75840 -10.68147 -10.44283 -10.19937 -9.78057 -8.89411 -8.04399 -6.15534 0.26998 0.52732 1.38849 1.41244 1.45943 1.48219 1.93605 2.43997 2.98318 3.22277 3.39001 3.70458 3.85947 4.06020 4.12493 4.28688 4.32461 4.37324 4.41500 4.44265 4.45686 4.61599 4.73255 4.78489 4.79617 4.82759 4.88691 4.95111 4.98896 5.21105 5.29127 5.34750 5.39545 5.60024 5.65388 5.77221 5.84693 5.91356 6.05711 6.37020 6.57897 6.88965 7.07929 7.14307 7.28299 7.51809 8.99509 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.006764 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.745788 B = 4138.283845 C = 5680.703646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C 0.248 3.752 4 H -0.030 1.030 5 C -0.517 4.517 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.659 5.659 14 C 0.144 3.856 15 H 0.089 0.911 16 C -0.089 4.089 17 C 0.461 3.539 18 O -0.502 6.502 19 O -0.370 6.370 20 C 0.032 3.968 21 C 0.087 3.913 22 C -0.178 4.178 23 C -0.077 4.077 24 C -0.177 4.177 25 C 0.081 3.919 26 N -0.492 5.492 27 H 0.024 0.976 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.257 0.743 33 H 0.334 0.666 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.983 12.006 -7.910 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C 0.139 3.861 4 H -0.012 1.012 5 C -0.555 4.555 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.288 5.288 14 C 0.032 3.968 15 H 0.107 0.893 16 C -0.127 4.127 17 C 0.304 3.696 18 O -0.388 6.388 19 O -0.287 6.287 20 C -0.061 4.061 21 C -0.053 4.053 22 C -0.198 4.198 23 C -0.102 4.102 24 C -0.196 4.196 25 C -0.077 4.077 26 N -0.201 5.201 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.148 0.852 39 H 0.169 0.831 40 H 0.183 0.817 41 H 0.179 0.821 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.642 10.558 -8.371 17.169 hybrid contribution 1.032 0.470 1.481 1.865 sum -9.609 11.028 -6.891 16.169 Atomic orbital electron populations 1.21958 0.97122 0.99286 1.01840 1.21317 0.94016 0.99371 0.98760 1.18563 0.92503 0.90146 0.84844 1.01207 1.21611 0.92944 1.36161 1.04826 0.93180 1.25628 1.02060 0.95332 0.95628 1.70039 1.36225 1.39696 1.10046 0.85706 0.81160 0.78210 0.77061 1.19750 1.21187 1.20029 1.60832 1.06385 1.31819 1.29747 1.20559 0.95372 0.88555 0.92356 0.89322 1.21347 1.04079 0.94409 0.92910 1.23763 0.73591 0.91418 0.80839 1.90637 1.49407 1.27208 1.71568 1.86467 1.76057 1.39051 1.27133 1.23419 1.01127 0.85814 0.95754 1.22239 0.89469 0.96507 0.97055 1.22240 1.01158 0.97853 0.98549 1.21936 0.97326 0.94837 0.96149 1.22423 0.94110 1.02347 1.00739 1.23048 1.00843 0.90969 0.92792 1.67278 1.20012 1.11790 1.21061 0.95655 0.89166 0.95037 0.96411 0.93012 0.93363 0.84782 0.84767 0.87181 0.93023 0.92074 0.85227 0.83091 0.81651 0.82099 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.64 8.55 71.98 0.62 -6.02 16 2 C -0.10 -5.14 5.45 30.59 0.17 -4.98 16 3 C 0.25 13.12 1.79 44.17 0.08 13.20 16 4 H -0.03 -1.75 6.94 -2.39 -0.02 -1.77 16 5 C -0.52 -29.72 8.59 25.60 0.22 -29.50 16 6 H 0.05 2.88 7.44 -2.91 -0.02 2.86 16 7 C 0.01 0.67 5.29 84.65 0.45 1.12 16 8 N -0.92 -55.67 11.29 21.44 0.24 -55.43 16 9 Si 0.95 45.90 29.54 68.60 2.03 47.93 16 10 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 13 N -0.66 -29.09 4.81 -477.16 -2.30 -31.39 16 14 C 0.14 5.09 1.40 44.17 0.06 5.15 16 15 H 0.09 3.35 5.49 -2.39 -0.01 3.33 16 16 C -0.09 -2.40 5.48 29.85 0.16 -2.24 16 17 C 0.46 13.86 7.81 71.24 0.56 14.42 16 18 O -0.50 -18.76 12.25 21.97 0.27 -18.49 16 19 O -0.37 -9.33 10.56 -51.38 -0.54 -9.87 16 20 C 0.03 0.64 10.58 113.37 1.20 1.84 16 21 C 0.09 2.99 4.77 42.55 0.20 3.20 16 22 C -0.18 -4.87 9.77 22.36 0.22 -4.65 16 23 C -0.08 -1.76 10.18 22.47 0.23 -1.54 16 24 C -0.18 -4.29 10.11 22.36 0.23 -4.07 16 25 C 0.08 2.52 11.18 84.67 0.95 3.47 16 26 N -0.49 -18.49 9.01 -183.89 -1.66 -20.15 16 27 H 0.02 1.12 7.99 -2.39 -0.02 1.10 16 28 H 0.09 3.94 3.53 -2.38 -0.01 3.93 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 3.09 5.96 -2.39 -0.01 3.08 16 32 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.33 15.23 7.23 -89.69 -0.65 14.58 16 34 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.05 1.16 8.09 -2.39 -0.02 1.14 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -73.24 341.80 3.75 -69.48 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.38 Total: 28.52 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.33 Total: -10.59 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -3.71 Total: -106.97 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.27 Total: -28.37 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.24 3.75 -69.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.511 kcal (2) G-P(sol) polarization free energy of solvation -73.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds