Wall clock time and date at job start Tue Mar 31 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47153 * 2 1 4 4 H 1.08995 * 109.46936 * 305.00440 * 3 2 1 5 5 C 1.50699 * 109.47052 * 184.99889 * 3 2 1 6 6 H 1.07993 * 120.00310 * 239.99833 * 5 3 2 7 7 C 1.37880 * 119.99639 * 60.00615 * 5 3 2 8 8 N 1.31513 * 120.00311 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99720 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46979 * 59.99705 * 9 7 5 11 11 H 1.48491 * 109.47105 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47006 * 299.99769 * 9 7 5 13 13 O 1.45202 * 109.46611 * 65.00105 * 3 2 1 14 14 C 1.34747 * 116.99888 * 270.00073 * 13 3 2 15 15 O 1.21517 * 120.00491 * 359.97438 * 14 13 3 16 16 C 1.47292 * 119.99670 * 180.02562 * 14 13 3 17 17 C 1.41339 * 126.42715 * 5.38208 * 16 14 13 18 18 N 1.30438 * 108.01140 * 180.02562 * 17 16 14 19 19 N 1.39927 * 108.91865 * 0.02562 * 18 17 16 20 20 C 1.46505 * 125.74488 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46810 * 90.02465 * 20 19 18 22 22 C 1.34228 * 108.51196 * 359.72750 * 19 18 17 23 23 C 1.50701 * 126.29409 * 180.30083 * 22 19 18 24 24 C 1.52997 * 117.49868 * 311.57277 * 23 22 19 25 25 C 1.53002 * 117.49817 * 242.91601 * 23 22 19 26 26 H 1.08995 * 109.47650 * 60.00087 * 1 2 3 27 27 H 1.09005 * 109.47070 * 299.99476 * 1 2 3 28 28 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47734 * 119.99886 * 2 1 3 30 30 H 1.09002 * 109.47391 * 240.00114 * 2 1 3 31 31 H 0.96998 * 119.99979 * 180.02562 * 8 7 5 32 32 H 1.07995 * 125.99802 * 0.02562 * 17 16 14 33 33 H 1.08997 * 109.47261 * 210.02828 * 20 19 18 34 34 H 1.09003 * 109.46836 * 330.02926 * 20 19 18 35 35 H 1.08997 * 109.47098 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.47505 * 300.00213 * 21 20 19 37 37 H 1.09005 * 109.47462 * 60.00260 * 21 20 19 38 38 H 1.08999 * 115.55465 * 97.24322 * 23 22 19 39 39 H 1.09000 * 117.50057 * 0.02562 * 24 23 22 40 40 H 1.09008 * 117.49985 * 145.02005 * 24 23 22 41 41 H 1.09003 * 117.49544 * 214.97987 * 25 23 22 42 42 H 1.08997 * 117.49784 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3368 -2.1730 9 14 6.0049 0.8813 -1.3819 10 1 6.5974 0.1473 -0.2350 11 1 6.3977 0.2169 -2.6504 12 1 6.4994 2.2816 -1.3822 13 8 1.6558 2.0916 1.2408 14 6 0.4680 2.7278 1.2561 15 8 -0.2275 2.7403 0.2598 16 6 0.0133 3.4090 2.4803 17 6 0.7525 3.5721 3.6739 18 7 0.0085 4.2256 4.5229 19 7 -1.2239 4.5074 3.9231 20 6 -2.3359 5.2270 4.5493 21 6 -2.1961 6.7246 4.2696 22 6 -1.2138 4.0122 2.6755 23 6 -2.3360 4.0966 1.6732 24 6 -3.7375 3.7074 2.1474 25 6 -2.9642 2.7829 1.2038 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8292 -0.0616 -2.9496 32 1 1.7570 3.2179 3.8518 33 1 -3.2790 4.8670 4.1382 34 1 -2.3195 5.0553 5.6256 35 1 -3.0231 7.2601 4.7358 36 1 -1.2529 7.0846 4.6806 37 1 -2.2124 6.8964 3.1932 38 1 -2.2571 4.9048 0.9461 39 1 -3.8481 3.3906 3.1845 40 1 -4.5808 4.2593 1.7320 41 1 -3.2990 2.7270 0.1679 42 1 -2.5656 1.8576 1.6196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263480333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:13 Heat of formation + Delta-G solvation = 6.467155 kcal Electronic energy + Delta-G solvation = -24077.658870 eV Core-core repulsion = 20639.357435 eV Total energy + Delta-G solvation = -3438.301435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44692 -39.00118 -37.09751 -35.49631 -34.52321 -33.34664 -31.29430 -30.24666 -29.69458 -27.19998 -24.81703 -23.40492 -22.98938 -22.53222 -22.00983 -20.57374 -19.55119 -18.97800 -17.36092 -16.49633 -16.21362 -15.79127 -15.24965 -14.95264 -14.72754 -14.57336 -14.50054 -14.24131 -13.40838 -12.98039 -12.78015 -12.64414 -12.39141 -12.02747 -11.96558 -11.75484 -11.45382 -11.36662 -11.30014 -11.09329 -11.02055 -10.86666 -10.63506 -10.52050 -10.23519 -10.20803 -9.69342 -9.42483 -9.33198 -9.22730 -8.70205 -8.48531 -8.35895 -6.11614 -4.17850 1.60386 2.29653 2.40487 3.30841 3.34166 3.36881 3.62279 3.88997 3.92246 4.27351 4.36061 4.48296 4.69996 4.75543 4.87826 4.89245 5.06832 5.16423 5.20428 5.30287 5.43137 5.44934 5.57126 5.71386 5.78827 5.85976 6.00128 6.12709 6.21849 6.32315 6.40264 6.54072 6.64854 6.86483 6.98412 7.07491 7.26976 7.38869 7.66763 7.70157 7.84002 8.07092 8.26197 8.78595 9.06146 9.47360 10.95110 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.004251 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.401828 B = 6585.108385 C = 7330.716674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.225 3.775 4 H 0.047 0.953 5 C -0.519 4.519 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.275 1.275 13 O -0.354 6.354 14 C 0.530 3.470 15 O -0.517 6.517 16 C -0.261 4.261 17 C 0.102 3.898 18 N -0.306 5.306 19 N -0.358 5.358 20 C 0.121 3.879 21 C -0.170 4.170 22 C 0.179 3.821 23 C -0.095 4.095 24 C -0.189 4.189 25 C -0.125 4.125 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.266 0.734 32 H 0.198 0.802 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 8.175 10.774 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.270 6.270 14 C 0.374 3.626 15 O -0.408 6.408 16 C -0.274 4.274 17 C -0.085 4.085 18 N -0.125 5.125 19 N -0.137 5.137 20 C 0.000 4.000 21 C -0.228 4.228 22 C 0.048 3.952 23 C -0.115 4.115 24 C -0.226 4.226 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.215 0.785 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.415 8.627 11.550 20.387 hybrid contribution 1.111 -0.378 -0.997 1.540 sum -13.304 8.249 10.553 18.879 Atomic orbital electron populations 1.21842 0.98407 0.98718 1.00819 1.22007 0.92664 0.99494 1.03163 1.20598 0.94736 0.88638 0.78810 0.93540 1.21029 0.89878 1.38726 1.06117 0.91435 1.24863 0.99043 0.94867 0.95119 1.69882 1.35342 1.37958 1.09493 0.86374 0.84163 0.78438 0.77397 1.19981 1.21119 1.20043 1.86515 1.33917 1.62744 1.43827 1.19745 0.80690 0.76192 0.85984 1.90753 1.55654 1.59532 1.34896 1.19408 0.95902 1.15097 0.96999 1.24225 0.99872 0.94450 0.89992 1.77185 0.91380 1.22042 1.21913 1.48468 1.12829 1.42992 1.09437 1.21871 0.86442 0.92140 0.99540 1.22171 1.03317 0.94246 1.03024 1.20443 0.95044 0.93702 0.86042 1.20414 0.89301 1.02885 0.98911 1.23217 0.93946 1.05090 1.00377 1.22833 0.99974 0.93466 0.99950 0.92815 0.94798 0.95142 0.94132 0.87504 0.92454 0.78542 0.88283 0.88613 0.90459 0.91536 0.91768 0.85306 0.88942 0.87896 0.87584 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.56 37.15 0.32 -2.77 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 6.02 2.25 -27.88 -0.06 5.95 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.65 8.90 -34.44 -0.31 -14.95 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.20 11.29 55.43 0.63 -24.57 16 9 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 O -0.35 -8.59 9.66 -40.62 -0.39 -8.98 16 14 C 0.53 11.49 6.40 34.41 0.22 11.71 16 15 O -0.52 -11.71 11.88 -19.28 -0.23 -11.94 16 16 C -0.26 -4.73 6.12 -105.08 -0.64 -5.37 16 17 C 0.10 1.67 11.87 -16.97 -0.20 1.47 16 18 N -0.31 -4.73 12.50 30.87 0.39 -4.34 16 19 N -0.36 -4.77 3.58 -56.59 -0.20 -4.97 16 20 C 0.12 1.06 6.92 -4.04 -0.03 1.03 16 21 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 22 C 0.18 2.69 6.45 -81.59 -0.53 2.17 16 23 C -0.10 -1.21 5.01 -91.77 -0.46 -1.67 16 24 C -0.19 -1.75 8.81 -26.70 -0.24 -1.98 16 25 C -0.12 -1.57 8.96 -26.70 -0.24 -1.81 16 26 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 27 H 0.03 0.72 6.06 -51.93 -0.31 0.41 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.20 2.91 8.06 -52.49 -0.42 2.49 16 33 H 0.10 0.68 5.10 -51.93 -0.26 0.42 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.09 0.79 6.88 -51.93 -0.36 0.43 16 40 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -31.55 345.57 -7.87 -39.42 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.22 Total: 3.00 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.02 Total: -9.02 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.81 Total: -33.89 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.62 Total: -20.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.55 -7.87 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263480333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.888 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds