Wall clock time and date at job start Tue Mar 31 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47153 * 2 1 4 4 H 1.08995 * 109.46936 * 305.00440 * 3 2 1 5 5 C 1.50699 * 109.47052 * 184.99889 * 3 2 1 6 6 H 1.07993 * 120.00310 * 239.99833 * 5 3 2 7 7 C 1.37880 * 119.99639 * 60.00615 * 5 3 2 8 8 N 1.31513 * 120.00311 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99720 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46979 * 59.99705 * 9 7 5 11 11 H 1.48491 * 109.47105 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47006 * 299.99769 * 9 7 5 13 13 O 1.45202 * 109.46611 * 65.00105 * 3 2 1 14 14 C 1.34747 * 116.99888 * 270.00073 * 13 3 2 15 15 O 1.21517 * 120.00491 * 359.97438 * 14 13 3 16 16 C 1.47292 * 119.99670 * 180.02562 * 14 13 3 17 17 C 1.41339 * 126.42715 * 5.38208 * 16 14 13 18 18 N 1.30438 * 108.01140 * 180.02562 * 17 16 14 19 19 N 1.39927 * 108.91865 * 0.02562 * 18 17 16 20 20 C 1.46505 * 125.74488 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46810 * 90.02465 * 20 19 18 22 22 C 1.34228 * 108.51196 * 359.72750 * 19 18 17 23 23 C 1.50701 * 126.29409 * 180.30083 * 22 19 18 24 24 C 1.52997 * 117.49868 * 311.57277 * 23 22 19 25 25 C 1.53002 * 117.49817 * 242.91601 * 23 22 19 26 26 H 1.08995 * 109.47650 * 60.00087 * 1 2 3 27 27 H 1.09005 * 109.47070 * 299.99476 * 1 2 3 28 28 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47734 * 119.99886 * 2 1 3 30 30 H 1.09002 * 109.47391 * 240.00114 * 2 1 3 31 31 H 0.96998 * 119.99979 * 180.02562 * 8 7 5 32 32 H 1.07995 * 125.99802 * 0.02562 * 17 16 14 33 33 H 1.08997 * 109.47261 * 210.02828 * 20 19 18 34 34 H 1.09003 * 109.46836 * 330.02926 * 20 19 18 35 35 H 1.08997 * 109.47098 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.47505 * 300.00213 * 21 20 19 37 37 H 1.09005 * 109.47462 * 60.00260 * 21 20 19 38 38 H 1.08999 * 115.55465 * 97.24322 * 23 22 19 39 39 H 1.09000 * 117.50057 * 0.02562 * 24 23 22 40 40 H 1.09008 * 117.49985 * 145.02005 * 24 23 22 41 41 H 1.09003 * 117.49544 * 214.97987 * 25 23 22 42 42 H 1.08997 * 117.49784 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3368 -2.1730 9 14 6.0049 0.8813 -1.3819 10 1 6.5974 0.1473 -0.2350 11 1 6.3977 0.2169 -2.6504 12 1 6.4994 2.2816 -1.3822 13 8 1.6558 2.0916 1.2408 14 6 0.4680 2.7278 1.2561 15 8 -0.2275 2.7403 0.2598 16 6 0.0133 3.4090 2.4803 17 6 0.7525 3.5721 3.6739 18 7 0.0085 4.2256 4.5229 19 7 -1.2239 4.5074 3.9231 20 6 -2.3359 5.2270 4.5493 21 6 -2.1961 6.7246 4.2696 22 6 -1.2138 4.0122 2.6755 23 6 -2.3360 4.0966 1.6732 24 6 -3.7375 3.7074 2.1474 25 6 -2.9642 2.7829 1.2038 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8292 -0.0616 -2.9496 32 1 1.7570 3.2179 3.8518 33 1 -3.2790 4.8670 4.1382 34 1 -2.3195 5.0553 5.6256 35 1 -3.0231 7.2601 4.7358 36 1 -1.2529 7.0846 4.6806 37 1 -2.2124 6.8964 3.1932 38 1 -2.2571 4.9048 0.9461 39 1 -3.8481 3.3906 3.1845 40 1 -4.5808 4.2593 1.7320 41 1 -3.2990 2.7270 0.1679 42 1 -2.5656 1.8576 1.6196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263480333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:12 Heat of formation + Delta-G solvation = -10.892910 kcal Electronic energy + Delta-G solvation = -24078.411659 eV Core-core repulsion = 20639.357435 eV Total energy + Delta-G solvation = -3439.054224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65049 -40.78031 -38.08678 -37.31145 -35.50230 -35.31709 -33.30400 -31.40678 -30.80495 -29.21275 -26.07728 -24.98338 -24.26266 -23.54743 -23.22945 -22.10835 -21.17543 -20.30039 -18.94568 -18.40894 -17.57882 -17.19374 -16.77036 -16.52320 -16.25086 -15.70470 -15.59197 -15.30518 -14.77491 -14.72714 -14.39795 -13.88985 -13.45896 -13.38454 -13.27360 -13.04908 -13.03836 -12.97533 -12.74207 -12.56607 -12.52338 -12.33469 -12.12630 -12.09213 -11.69745 -11.49441 -11.36712 -11.22069 -11.03876 -10.74650 -10.46967 -10.44070 -9.76217 -8.23416 -6.39438 0.34668 1.03452 1.26503 1.43118 1.46580 1.54516 2.19792 2.31471 2.49695 2.72018 3.05943 3.29407 3.50202 3.84203 3.90630 4.04110 4.05975 4.12394 4.22907 4.33624 4.42771 4.43545 4.45896 4.58143 4.68920 4.77013 4.81170 4.84688 4.92527 4.97942 5.06860 5.15147 5.19435 5.20155 5.29346 5.33196 5.47471 5.56812 5.73464 5.82952 6.04800 6.22586 6.44672 6.66262 7.17080 7.35302 8.83119 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.004251 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.401828 B = 6585.108385 C = 7330.716674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.129 4.129 3 C 0.230 3.770 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.270 1.270 13 O -0.365 6.365 14 C 0.525 3.475 15 O -0.534 6.534 16 C -0.303 4.303 17 C 0.096 3.904 18 N -0.312 5.312 19 N -0.344 5.344 20 C 0.108 3.892 21 C -0.165 4.165 22 C 0.196 3.804 23 C -0.117 4.117 24 C -0.141 4.141 25 C -0.148 4.148 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.270 0.730 32 H 0.203 0.797 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.105 0.895 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.685 9.110 12.234 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.167 4.167 3 C 0.177 3.823 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.195 1.195 13 O -0.281 6.281 14 C 0.371 3.629 15 O -0.426 6.426 16 C -0.315 4.315 17 C -0.091 4.091 18 N -0.131 5.131 19 N -0.123 5.123 20 C -0.011 4.011 21 C -0.223 4.223 22 C 0.062 3.938 23 C -0.136 4.136 24 C -0.178 4.178 25 C -0.186 4.186 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.219 0.781 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.123 0.877 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.024 9.584 13.050 22.780 hybrid contribution 1.470 -0.584 -1.403 2.115 sum -14.554 9.000 11.647 20.699 Atomic orbital electron populations 1.21663 0.96110 1.00254 1.00179 1.21853 0.94656 0.98172 1.02003 1.20290 0.94232 0.89145 0.78637 0.97448 1.21322 0.90761 1.39881 1.06840 0.91862 1.25753 1.04015 0.93927 0.94365 1.70004 1.37356 1.37941 1.09823 0.85311 0.77996 0.78691 0.77870 1.18992 1.20126 1.19537 1.86496 1.35718 1.63482 1.42443 1.20310 0.79603 0.75751 0.87193 1.90725 1.55743 1.60261 1.35871 1.19335 0.98117 1.17785 0.96297 1.24323 1.00388 0.94744 0.89649 1.77140 0.92252 1.21827 1.21884 1.48913 1.12934 1.41703 1.08763 1.22420 0.85677 0.92518 1.00447 1.22159 1.03843 0.93466 1.02788 1.20703 0.94464 0.91774 0.86848 1.20532 0.90850 1.02990 0.99276 1.23365 0.92455 1.01627 1.00344 1.22786 1.02070 0.92786 1.00938 0.94215 0.94607 0.92380 0.94076 0.89592 0.92095 0.78052 0.85692 0.87032 0.87085 0.93236 0.92447 0.85035 0.87494 0.84535 0.87705 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.56 71.98 0.62 -4.99 16 2 C -0.13 -6.69 5.49 30.59 0.17 -6.52 16 3 C 0.23 12.94 2.25 29.85 0.07 13.01 16 4 H 0.01 0.48 7.16 -2.39 -0.02 0.47 16 5 C -0.55 -32.14 8.90 25.60 0.23 -31.91 16 6 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 7 C 0.02 1.08 5.29 84.66 0.45 1.52 16 8 N -0.91 -53.01 11.29 21.45 0.24 -52.77 16 9 Si 0.98 43.81 29.54 68.60 2.03 45.84 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 O -0.36 -18.61 9.66 -56.58 -0.55 -19.15 16 14 C 0.53 23.85 6.40 70.20 0.45 24.30 16 15 O -0.53 -25.36 11.88 19.78 0.23 -25.13 16 16 C -0.30 -11.19 6.12 -20.16 -0.12 -11.32 16 17 C 0.10 3.20 11.87 85.66 1.02 4.22 16 18 N -0.31 -9.37 12.50 -56.25 -0.70 -10.08 16 19 N -0.34 -8.56 3.58 -332.95 -1.19 -9.76 16 20 C 0.11 1.51 6.92 86.38 0.60 2.10 16 21 C -0.16 -1.98 10.24 71.98 0.74 -1.25 16 22 C 0.20 5.74 6.45 42.17 0.27 6.02 16 23 C -0.12 -2.78 5.01 -11.54 -0.06 -2.84 16 24 C -0.14 -2.10 8.81 30.62 0.27 -1.83 16 25 C -0.15 -3.61 8.96 30.62 0.27 -3.34 16 26 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 27 H 0.03 1.56 6.06 -2.38 -0.01 1.55 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.09 4.83 5.95 -2.39 -0.01 4.82 16 31 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.20 6.22 8.06 -2.91 -0.02 6.19 16 33 H 0.13 1.12 5.10 -2.39 -0.01 1.11 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.11 1.33 6.88 -2.39 -0.02 1.31 16 40 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -71.59 345.57 6.04 -65.55 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.02 Total: 18.32 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.96 Total: -12.82 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.65 Total: -72.60 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.31 Total: -44.28 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.59 6.04 -65.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263480333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.652 kcal (2) G-P(sol) polarization free energy of solvation -71.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds