Wall clock time and date at job start Tue Mar 31 2020 07:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47472 * 2 1 4 4 N 1.46495 * 109.47632 * 180.02562 * 3 2 1 5 5 C 1.46505 * 119.99647 * 270.00296 * 4 3 2 6 6 C 1.53001 * 109.46787 * 269.99415 * 5 4 3 7 7 C 1.34770 * 120.00150 * 89.99744 * 4 3 2 8 8 O 1.21586 * 120.00138 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99992 * 180.02562 * 7 4 3 10 10 C 1.40031 * 119.99952 * 175.43258 * 9 7 4 11 11 C 1.38908 * 120.00278 * 215.13808 * 10 9 7 12 12 C 1.38009 * 119.99794 * 180.02562 * 11 10 9 13 13 C 1.38898 * 120.00244 * 0.02562 * 12 11 10 14 14 O 1.35784 * 119.99926 * 179.97438 * 13 12 11 15 15 C 1.34813 * 117.00209 * 5.37517 * 14 13 12 16 16 H 1.08002 * 119.99396 * 354.95930 * 15 14 13 17 17 C 1.38627 * 120.00479 * 174.95758 * 15 14 13 18 18 N 1.31573 * 119.99652 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47190 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47152 * 119.99980 * 19 17 15 22 22 H 1.48500 * 109.47556 * 239.99937 * 19 17 15 23 23 C 1.38899 * 120.00278 * 0.23424 * 13 12 11 24 24 C 1.38017 * 120.00177 * 359.48737 * 23 13 12 25 25 H 1.08999 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47297 * 299.99862 * 1 2 3 27 27 H 1.09002 * 109.47271 * 59.99598 * 1 2 3 28 28 H 1.08999 * 109.47672 * 239.99859 * 2 1 3 29 29 H 1.08998 * 109.47444 * 119.99928 * 2 1 3 30 30 H 1.09004 * 109.46747 * 59.99801 * 3 2 1 31 31 H 1.08998 * 109.46728 * 300.00367 * 3 2 1 32 32 H 1.08988 * 109.47526 * 29.99660 * 5 4 3 33 33 H 1.09000 * 109.47032 * 149.99828 * 5 4 3 34 34 H 1.09000 * 109.46779 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47494 * 300.00181 * 6 5 4 36 36 H 1.09000 * 109.46997 * 60.00391 * 6 5 4 37 37 H 0.96997 * 120.00259 * 355.43488 * 9 7 4 38 38 H 1.07998 * 119.99813 * 0.02562 * 11 10 9 39 39 H 1.08005 * 119.99594 * 179.97438 * 12 11 10 40 40 H 0.97004 * 120.00076 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.00331 * 179.72605 * 23 13 12 42 42 H 1.07990 * 120.00364 * 180.23611 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2379 1.4423 1.2679 6 6 4.4931 2.8848 1.7096 7 6 4.1783 1.4427 -1.1680 8 8 3.5700 1.4433 -2.2208 9 7 5.5261 1.4422 -1.1686 10 6 6.2257 1.3458 -2.3777 11 6 7.4247 0.6465 -2.4326 12 6 8.1144 0.5520 -3.6243 13 6 7.6100 1.1565 -4.7686 14 8 8.2889 1.0639 -5.9408 15 6 9.3855 0.2798 -5.9528 16 1 9.7343 -0.1747 -5.0372 17 6 10.0654 0.0569 -7.1401 18 7 9.6407 0.6110 -8.2554 19 14 11.5852 -1.0290 -7.1565 20 1 11.8525 -1.5272 -5.7834 21 1 11.3604 -2.1815 -8.0657 22 1 12.7507 -0.2422 -7.6337 23 6 6.4139 1.8603 -4.7125 24 6 5.7211 1.9501 -3.5222 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.6492 0.9284 2.0276 33 1 5.1903 0.9285 1.1371 34 1 5.0389 2.8846 2.6532 35 1 5.0819 3.3987 0.9498 36 1 3.5408 3.3986 1.8404 37 1 6.0115 1.5086 -0.3314 38 1 7.8171 0.1768 -1.5428 39 1 9.0469 0.0086 -3.6668 40 1 10.1162 0.4547 -9.0863 41 1 6.0239 2.3341 -5.6013 42 1 4.7892 2.4941 -3.4795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318083950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:36 Heat of formation + Delta-G solvation = -28.380684 kcal Electronic energy + Delta-G solvation = -22949.686677 eV Core-core repulsion = 19509.874126 eV Total energy + Delta-G solvation = -3439.812550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.55012 -38.83576 -37.07150 -35.94888 -34.50092 -33.25503 -32.10440 -30.54393 -30.14368 -28.05449 -26.11108 -25.18917 -23.67268 -22.28220 -22.07323 -21.06208 -19.62342 -18.32562 -17.86358 -17.24182 -16.55068 -15.64165 -15.38849 -15.02975 -14.51500 -14.47485 -14.19981 -14.03594 -13.76281 -13.51103 -13.30327 -12.99554 -12.78491 -12.58674 -12.39201 -12.19342 -11.89198 -11.80620 -11.59043 -11.54640 -11.41916 -11.36000 -11.01285 -10.84000 -10.67802 -10.41885 -9.84094 -9.57579 -9.18396 -8.81845 -8.63286 -8.14181 -6.85595 -6.40347 -3.98363 2.21443 2.29367 2.65101 3.13847 3.16003 3.21597 3.35112 3.91973 4.00424 4.56733 4.62932 4.74705 4.75823 4.96003 5.01316 5.08980 5.13897 5.21102 5.39203 5.40963 5.43751 5.52069 5.60090 5.60974 5.80454 5.83846 5.86468 5.94391 6.07553 6.18715 6.25382 6.32085 6.47190 6.74653 6.90985 6.96676 7.15899 7.28367 7.29568 7.48048 7.86371 8.02711 8.05015 8.72244 9.05262 9.76841 10.77954 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.002950 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.029178 B = 9489.477576 C = 9818.632293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.134 3.866 4 N -0.632 5.632 5 C 0.105 3.895 6 C -0.175 4.175 7 C 0.701 3.299 8 O -0.573 6.573 9 N -0.675 5.675 10 C 0.054 3.946 11 C -0.093 4.093 12 C -0.219 4.219 13 C 0.146 3.854 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.178 4.178 24 C -0.067 4.067 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.397 0.603 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.120 0.880 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 1.052 21.266 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.011 3.989 4 N -0.369 5.369 5 C -0.019 4.019 6 C -0.233 4.233 7 C 0.403 3.597 8 O -0.449 6.449 9 N -0.324 5.324 10 C -0.039 4.039 11 C -0.114 4.114 12 C -0.239 4.239 13 C 0.092 3.908 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.198 4.198 24 C -0.087 4.087 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.619 1.153 20.040 23.193 hybrid contribution 1.089 -0.636 0.609 1.401 sum -10.529 0.517 20.649 23.185 Atomic orbital electron populations 1.21680 0.95240 1.01863 1.01825 1.21912 0.96003 0.97527 1.02553 1.21342 0.77844 0.96788 1.02902 1.47215 1.06522 1.78817 1.04390 1.21488 0.97121 0.97236 0.86059 1.22259 1.02423 0.96909 1.01742 1.15916 0.81841 0.78053 0.83846 1.90916 1.67523 1.56958 1.29548 1.42481 1.04324 1.76945 1.08600 1.17072 0.95317 1.05912 0.85622 1.20442 0.95044 0.98360 0.97528 1.20946 1.03020 1.07736 0.92206 1.19405 0.91102 0.93508 0.86780 1.83993 1.37204 1.59701 1.27327 1.21350 1.02316 1.26880 0.96111 0.89082 1.25278 0.99315 0.97837 0.94188 1.70060 1.39310 1.41498 0.98981 0.85654 0.79931 0.79103 0.78754 1.19151 1.20196 1.20204 1.20159 0.95102 1.06233 0.98302 1.20775 0.99087 0.97801 0.91045 0.92580 0.92848 0.92365 0.91267 0.92246 0.90947 0.89726 0.90142 0.90834 0.91415 0.92138 0.92153 0.76775 0.87354 0.85160 0.92129 0.86189 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.14 -1.31 6.26 -26.73 -0.17 -1.48 16 3 C 0.13 1.30 5.41 -4.04 -0.02 1.28 16 4 N -0.63 -6.91 2.47 -179.43 -0.44 -7.35 16 5 C 0.10 0.76 5.85 -4.04 -0.02 0.74 16 6 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 7 C 0.70 10.74 8.12 -86.92 -0.71 10.03 16 8 O -0.57 -11.08 13.36 5.29 0.07 -11.01 16 9 N -0.67 -9.88 5.18 -14.18 -0.07 -9.95 16 10 C 0.05 0.99 6.30 -83.61 -0.53 0.47 16 11 C -0.09 -1.72 9.96 -39.42 -0.39 -2.11 16 12 C -0.22 -4.80 9.16 -39.42 -0.36 -5.16 16 13 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 14 O -0.18 -5.20 9.76 -0.01 0.00 -5.20 16 15 C -0.39 -11.02 9.48 30.88 0.29 -10.72 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 18 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 19 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C -0.18 -4.04 9.98 -39.42 -0.39 -4.43 16 24 C -0.07 -1.38 8.69 -39.41 -0.34 -1.72 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.08 0.98 7.42 -51.93 -0.39 0.60 16 32 H 0.08 0.45 8.07 -51.94 -0.42 0.03 16 33 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 4.44 6.62 -40.82 -0.27 4.17 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.13 2.82 5.63 -52.48 -0.30 2.52 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 42 H 0.13 2.65 6.22 -52.49 -0.33 2.33 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -33.60 350.04 -7.77 -41.38 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.09 Total: 6.42 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.25 Total: -10.31 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.24 Total: -42.23 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.07 Total: -16.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.60 -7.77 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318083950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.995 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds