Wall clock time and date at job start Tue Mar 31 2020 07:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47472 * 2 1 4 4 N 1.46495 * 109.47632 * 180.02562 * 3 2 1 5 5 C 1.46505 * 119.99647 * 270.00296 * 4 3 2 6 6 C 1.53001 * 109.46787 * 269.99415 * 5 4 3 7 7 C 1.34770 * 120.00150 * 89.99744 * 4 3 2 8 8 O 1.21586 * 120.00138 * 0.02562 * 7 4 3 9 9 N 1.34776 * 119.99992 * 180.02562 * 7 4 3 10 10 C 1.40031 * 119.99952 * 175.43258 * 9 7 4 11 11 C 1.38908 * 120.00278 * 215.13808 * 10 9 7 12 12 C 1.38009 * 119.99794 * 180.02562 * 11 10 9 13 13 C 1.38898 * 120.00244 * 0.02562 * 12 11 10 14 14 O 1.35784 * 119.99926 * 179.97438 * 13 12 11 15 15 C 1.34813 * 117.00209 * 5.37517 * 14 13 12 16 16 H 1.08002 * 119.99396 * 354.95930 * 15 14 13 17 17 C 1.38627 * 120.00479 * 174.95758 * 15 14 13 18 18 N 1.31573 * 119.99652 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00309 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47190 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47152 * 119.99980 * 19 17 15 22 22 H 1.48500 * 109.47556 * 239.99937 * 19 17 15 23 23 C 1.38899 * 120.00278 * 0.23424 * 13 12 11 24 24 C 1.38017 * 120.00177 * 359.48737 * 23 13 12 25 25 H 1.08999 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47297 * 299.99862 * 1 2 3 27 27 H 1.09002 * 109.47271 * 59.99598 * 1 2 3 28 28 H 1.08999 * 109.47672 * 239.99859 * 2 1 3 29 29 H 1.08998 * 109.47444 * 119.99928 * 2 1 3 30 30 H 1.09004 * 109.46747 * 59.99801 * 3 2 1 31 31 H 1.08998 * 109.46728 * 300.00367 * 3 2 1 32 32 H 1.08988 * 109.47526 * 29.99660 * 5 4 3 33 33 H 1.09000 * 109.47032 * 149.99828 * 5 4 3 34 34 H 1.09000 * 109.46779 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47494 * 300.00181 * 6 5 4 36 36 H 1.09000 * 109.46997 * 60.00391 * 6 5 4 37 37 H 0.96997 * 120.00259 * 355.43488 * 9 7 4 38 38 H 1.07998 * 119.99813 * 0.02562 * 11 10 9 39 39 H 1.08005 * 119.99594 * 179.97438 * 12 11 10 40 40 H 0.97004 * 120.00076 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.00331 * 179.72605 * 23 13 12 42 42 H 1.07990 * 120.00364 * 180.23611 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2379 1.4423 1.2679 6 6 4.4931 2.8848 1.7096 7 6 4.1783 1.4427 -1.1680 8 8 3.5700 1.4433 -2.2208 9 7 5.5261 1.4422 -1.1686 10 6 6.2257 1.3458 -2.3777 11 6 7.4247 0.6465 -2.4326 12 6 8.1144 0.5520 -3.6243 13 6 7.6100 1.1565 -4.7686 14 8 8.2889 1.0639 -5.9408 15 6 9.3855 0.2798 -5.9528 16 1 9.7343 -0.1747 -5.0372 17 6 10.0654 0.0569 -7.1401 18 7 9.6407 0.6110 -8.2554 19 14 11.5852 -1.0290 -7.1565 20 1 11.8525 -1.5272 -5.7834 21 1 11.3604 -2.1815 -8.0657 22 1 12.7507 -0.2422 -7.6337 23 6 6.4139 1.8603 -4.7125 24 6 5.7211 1.9501 -3.5222 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.6492 0.9284 2.0276 33 1 5.1903 0.9285 1.1371 34 1 5.0389 2.8846 2.6532 35 1 5.0819 3.3987 0.9498 36 1 3.5408 3.3986 1.8404 37 1 6.0115 1.5086 -0.3314 38 1 7.8171 0.1768 -1.5428 39 1 9.0469 0.0086 -3.6668 40 1 10.1162 0.4547 -9.0863 41 1 6.0239 2.3341 -5.6013 42 1 4.7892 2.4941 -3.4795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318083950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:34 Heat of formation + Delta-G solvation = -49.450927 kcal Electronic energy + Delta-G solvation = -22950.600351 eV Core-core repulsion = 19509.874126 eV Total energy + Delta-G solvation = -3440.726225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.79756 -40.55292 -38.55500 -37.20784 -35.70437 -34.41315 -33.95854 -31.86301 -31.24973 -29.58403 -27.48693 -26.74076 -24.44324 -23.86843 -23.24376 -22.37934 -20.89394 -19.81000 -19.30543 -18.87086 -18.02856 -16.77791 -16.53110 -16.35159 -16.14227 -15.81785 -15.48197 -15.26770 -15.12554 -14.76200 -14.57463 -14.46685 -14.06444 -13.60795 -13.57814 -13.27684 -13.20869 -13.10360 -12.87672 -12.70939 -12.52082 -12.41442 -12.20883 -12.07578 -12.01227 -11.58859 -11.35145 -11.24141 -10.92743 -10.52947 -9.83427 -9.71044 -8.56455 -8.44060 -6.11553 0.53302 0.59701 1.37477 1.45612 1.56262 1.58882 2.08651 2.20223 2.84817 2.89256 3.17337 3.53814 3.97003 4.03796 4.05960 4.08972 4.15316 4.36087 4.39561 4.47915 4.50946 4.56679 4.62919 4.72365 4.77782 4.90458 4.95033 4.95829 5.06550 5.17333 5.21231 5.23758 5.32210 5.36099 5.37939 5.44065 5.58466 5.65211 5.71383 5.94246 6.04571 6.20335 6.90704 7.00154 7.52299 7.81588 8.79618 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.002950 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.029178 B = 9489.477576 C = 9818.632293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.131 3.869 4 N -0.621 5.621 5 C 0.097 3.903 6 C -0.170 4.170 7 C 0.694 3.306 8 O -0.620 6.620 9 N -0.664 5.664 10 C 0.081 3.919 11 C -0.081 4.081 12 C -0.218 4.218 13 C 0.107 3.893 14 O -0.233 6.233 15 C -0.411 4.411 16 H 0.107 0.893 17 C -0.027 4.027 18 N -0.924 5.924 19 Si 1.021 2.979 20 H -0.247 1.247 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.189 4.189 24 C -0.073 4.073 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.418 0.582 38 H 0.158 0.842 39 H 0.134 0.866 40 H 0.272 0.728 41 H 0.110 0.890 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.079 -0.009 25.984 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.008 3.992 4 N -0.357 5.357 5 C -0.025 4.025 6 C -0.229 4.229 7 C 0.397 3.603 8 O -0.500 6.500 9 N -0.314 5.314 10 C -0.014 4.014 11 C -0.101 4.101 12 C -0.238 4.238 13 C 0.057 3.943 14 O -0.139 6.139 15 C -0.487 4.487 16 H 0.124 0.876 17 C -0.224 4.224 18 N -0.563 5.563 19 Si 0.840 3.160 20 H -0.170 1.170 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.209 4.209 24 C -0.094 4.094 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.258 0.742 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.549 0.107 24.892 27.441 hybrid contribution 0.765 -0.214 -0.538 0.959 sum -10.784 -0.108 24.354 26.635 Atomic orbital electron populations 1.21663 0.93942 1.02320 1.02394 1.21845 0.97137 0.96880 1.01521 1.21506 0.77049 0.97208 1.03405 1.47319 1.07104 1.76955 1.04323 1.21842 0.97683 0.98329 0.84627 1.22224 1.02526 0.95908 1.02227 1.16173 0.81798 0.77811 0.84561 1.90898 1.68384 1.58898 1.31814 1.42291 1.04345 1.76729 1.08069 1.17177 0.94869 1.03046 0.86294 1.20792 0.94186 0.97246 0.97900 1.21106 1.03261 1.06990 0.92398 1.19831 0.92021 0.95440 0.87044 1.83962 1.38584 1.61769 1.29618 1.21919 1.02535 1.27121 0.97143 0.87567 1.26643 1.02985 0.99324 0.93402 1.70219 1.41778 1.44298 0.99961 0.84491 0.74990 0.76746 0.79729 1.16971 1.19673 1.19430 1.20254 0.95132 1.06451 0.99101 1.20842 0.98946 0.98333 0.91250 0.92223 0.90618 0.93457 0.94951 0.90473 0.87300 0.92313 0.87318 0.89891 0.89100 0.93950 0.92064 0.74236 0.82450 0.84878 0.91932 0.87156 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.13 -2.24 6.26 30.59 0.19 -2.05 16 3 C 0.13 2.23 5.41 86.38 0.47 2.70 16 4 N -0.62 -11.86 2.47 -839.85 -2.08 -13.94 16 5 C 0.10 0.98 5.85 86.38 0.51 1.48 16 6 C -0.17 -1.52 10.24 71.98 0.74 -0.79 16 7 C 0.69 20.10 8.12 179.06 1.45 21.55 16 8 O -0.62 -24.04 13.36 -3.99 -0.05 -24.09 16 9 N -0.66 -17.56 5.18 -317.05 -1.64 -19.20 16 10 C 0.08 2.83 6.30 38.15 0.24 3.07 16 11 C -0.08 -2.76 9.96 22.38 0.22 -2.54 16 12 C -0.22 -9.43 9.16 22.37 0.20 -9.22 16 13 C 0.11 5.55 6.65 22.59 0.15 5.70 16 14 O -0.23 -14.35 9.76 -22.94 -0.22 -14.57 16 15 C -0.41 -24.08 9.48 67.91 0.64 -23.43 16 16 H 0.11 5.59 5.20 -2.91 -0.02 5.58 16 17 C -0.03 -1.53 5.49 84.82 0.47 -1.06 16 18 N -0.92 -57.81 13.67 21.61 0.30 -57.52 16 19 Si 1.02 43.01 29.55 68.60 2.03 45.03 16 20 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 23 C -0.19 -9.03 9.98 22.38 0.22 -8.80 16 24 C -0.07 -3.05 8.69 22.38 0.19 -2.85 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.10 8.07 -2.39 -0.02 1.08 16 31 H 0.06 1.33 7.42 -2.39 -0.02 1.32 16 32 H 0.11 0.59 8.07 -2.39 -0.02 0.57 16 33 H 0.08 0.71 6.43 -2.39 -0.02 0.70 16 34 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.42 7.59 6.62 -92.71 -0.61 6.97 16 38 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.13 5.64 5.63 -2.91 -0.02 5.62 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.11 5.29 8.06 -2.91 -0.02 5.27 16 42 H 0.13 5.42 6.22 -2.92 -0.02 5.41 16 Total: -1.00 -79.70 350.04 5.16 -74.55 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.41 Total: 27.19 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 6.42 Total: -17.45 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -3.42 Total: -90.66 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.28 Total: -38.66 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -79.70 5.16 -74.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318083950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.094 kcal (2) G-P(sol) polarization free energy of solvation -79.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds