Wall clock time and date at job start Tue Mar 31 2020 07:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 N 1.46499 * 109.47094 * 119.99890 * 2 1 3 5 5 C 1.46506 * 120.00055 * 300.00282 * 4 2 1 6 6 C 1.50697 * 109.46876 * 269.99991 * 5 4 2 7 7 H 1.08006 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99886 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99737 * 179.97438 * 8 6 5 10 10 Si 1.86791 * 119.99967 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47421 * 90.00043 * 10 8 6 12 12 H 1.48497 * 109.47081 * 210.00221 * 10 8 6 13 13 H 1.48503 * 109.47026 * 329.99911 * 10 8 6 14 14 C 1.34775 * 119.99925 * 120.00362 * 4 2 1 15 15 O 1.21280 * 119.99930 * 180.02562 * 14 4 2 16 16 C 1.50697 * 119.99971 * 359.97438 * 14 4 2 17 17 O 1.42902 * 109.47205 * 180.02562 * 16 14 4 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38650 * 120.78792 * 269.71759 * 19 18 17 21 21 C 1.38207 * 119.16129 * 179.79528 * 20 19 18 22 22 N 1.31868 * 120.76474 * 0.49389 * 21 20 19 23 23 C 1.31874 * 121.72157 * 359.73831 * 22 21 20 24 24 C 1.38199 * 120.77057 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47162 * 299.99679 * 1 2 3 26 26 H 1.09001 * 109.47466 * 60.00309 * 1 2 3 27 27 H 1.09007 * 109.46688 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47092 * 239.99818 * 2 1 3 29 29 H 1.09004 * 109.47250 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47188 * 299.99927 * 3 2 1 31 31 H 1.09001 * 109.46928 * 60.00178 * 3 2 1 32 32 H 1.08997 * 109.47087 * 30.00200 * 5 4 2 33 33 H 1.08998 * 109.46674 * 150.00089 * 5 4 2 34 34 H 0.97004 * 119.99677 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47017 * 60.00358 * 16 14 4 36 36 H 1.08999 * 109.47472 * 300.00035 * 16 14 4 37 37 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 38 38 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 39 39 H 1.07998 * 120.42060 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.61581 * 180.20726 * 21 20 19 41 41 H 1.07998 * 119.61429 * 180.02562 * 23 22 21 42 42 H 1.07991 * 120.42226 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7030 0.8019 2.9830 7 1 3.5427 1.0364 2.3454 8 6 2.5815 1.4101 4.2145 9 7 3.4883 2.2754 4.6128 10 14 1.1298 1.0040 5.3175 11 1 1.4801 -0.1417 6.1951 12 1 0.7982 2.1851 6.1542 13 1 -0.0431 0.6456 4.4801 14 6 2.7932 -1.7863 1.0725 15 8 3.1971 -2.3583 2.0628 16 6 3.1569 -2.3015 -0.2962 17 8 3.9781 -3.4636 -0.1651 18 6 4.3805 -4.0346 -1.4117 19 6 5.2371 -5.2477 -1.1553 20 6 6.6141 -5.1329 -1.0409 21 6 7.3669 -6.2669 -0.8015 22 7 6.7909 -7.4481 -0.6918 23 6 5.4849 -7.5954 -0.7996 24 6 4.6675 -6.5060 -1.0342 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.6903 0.2973 2.4844 33 1 1.6238 -1.0226 3.2291 34 1 3.4026 2.7035 5.4790 35 1 3.7017 -1.5308 -0.8415 36 1 2.2484 -2.5586 -0.8409 37 1 3.4972 -4.3273 -1.9793 38 1 4.9509 -3.3002 -1.9804 39 1 7.0921 -4.1689 -1.1340 40 1 8.4397 -6.1855 -0.7077 41 1 5.0490 -8.5788 -0.7035 42 1 3.5987 -6.6332 -1.1219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324078690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:46 Heat of formation + Delta-G solvation = -38.927542 kcal Electronic energy + Delta-G solvation = -23094.007897 eV Core-core repulsion = 19653.738001 eV Total energy + Delta-G solvation = -3440.269896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -40.33973 -39.46548 -37.61502 -35.98613 -33.36864 -32.75144 -31.38122 -31.05983 -29.40618 -27.43934 -26.83544 -25.95155 -23.64272 -22.34253 -22.17436 -21.41743 -18.35642 -17.46193 -16.94615 -16.77702 -16.63213 -16.31978 -15.75122 -15.73317 -15.06559 -14.39012 -14.11798 -13.90697 -13.83910 -13.66635 -13.57375 -12.95115 -12.81910 -12.51745 -12.18147 -11.92647 -11.83636 -11.76125 -11.66693 -11.38453 -11.00019 -10.92091 -10.54170 -10.39940 -10.11480 -9.94260 -9.80228 -9.66780 -9.47229 -9.31220 -8.97432 -8.57579 -7.76089 -6.07888 -4.05555 0.96031 0.97545 3.14511 3.27360 3.29626 3.35000 3.37926 3.69412 4.10261 4.29856 4.39992 4.50094 4.56802 4.85438 4.93964 4.95134 5.03683 5.11754 5.15340 5.19897 5.25783 5.31148 5.43901 5.44175 5.52613 5.60614 5.77248 5.87883 6.01681 6.12820 6.16305 6.25787 6.46124 6.50783 6.69714 6.90140 6.95530 7.00228 7.34275 7.61715 7.78408 8.20340 8.47655 8.91886 8.97668 9.52476 11.05287 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.003464 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.082093 B = 8082.139649 C = 8734.619125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.217 3.783 6 C -0.523 4.523 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.508 3.492 15 O -0.518 6.518 16 C 0.045 3.955 17 O -0.353 6.353 18 C 0.098 3.902 19 C -0.042 4.042 20 C -0.150 4.150 21 C 0.095 3.905 22 N -0.484 5.484 23 C 0.094 3.906 24 C -0.151 4.151 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -11.289 -17.508 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.322 5.322 5 C 0.097 3.903 6 C -0.562 4.562 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.293 3.707 15 O -0.393 6.393 16 C -0.035 4.035 17 O -0.271 6.271 18 C 0.021 3.979 19 C -0.050 4.050 20 C -0.169 4.169 21 C -0.061 4.061 22 N -0.194 5.194 23 C -0.063 4.063 24 C -0.171 4.171 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.831 -12.278 -16.469 20.559 hybrid contribution -1.287 0.921 0.255 1.603 sum -2.118 -11.357 -16.214 19.909 Atomic orbital electron populations 1.22181 0.95481 1.01850 1.02624 1.21056 0.94171 0.94569 0.87401 1.22145 1.01792 0.95137 1.02458 1.47983 1.49657 1.26344 1.08172 1.19637 0.96369 0.95151 0.79152 1.21333 1.09278 1.22484 1.03063 0.90521 1.24848 0.96080 0.94766 0.97338 1.69893 1.34553 1.28376 1.20766 0.86900 0.83392 0.78267 0.81432 1.19942 1.21126 1.19117 1.19873 0.79666 0.81246 0.89890 1.90711 1.51872 1.57549 1.39176 1.22382 0.95152 0.88677 0.97284 1.88120 1.69153 1.42688 1.27166 1.21347 0.96957 0.92494 0.87120 1.19994 0.93960 0.94328 0.96699 1.22127 0.94011 1.00711 1.00096 1.22774 1.00593 0.87567 0.95199 1.67661 1.12635 1.26756 1.12303 1.22755 0.89130 0.98999 0.95385 1.22086 1.01592 0.93008 1.00415 0.91436 0.91905 0.92826 0.90798 0.92387 0.93133 0.89891 0.94931 0.94710 0.92614 0.90524 0.90838 0.91909 0.91780 0.84460 0.82525 0.82612 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.17 37.16 0.34 -1.77 16 2 C 0.13 1.98 3.17 -67.93 -0.22 1.77 16 3 C -0.16 -2.49 8.47 37.16 0.31 -2.18 16 4 N -0.59 -11.77 2.39 -167.47 -0.40 -12.17 16 5 C 0.22 5.20 3.66 -5.19 -0.02 5.19 16 6 C -0.52 -14.64 8.38 -34.44 -0.29 -14.93 16 7 H 0.08 2.34 7.87 -52.48 -0.41 1.93 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 10 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 14 C 0.51 10.51 7.75 -10.99 -0.09 10.42 16 15 O -0.52 -13.44 16.08 -14.35 -0.23 -13.67 16 16 C 0.04 0.66 4.73 36.00 0.17 0.83 16 17 O -0.35 -5.62 9.86 -55.14 -0.54 -6.17 16 18 C 0.10 1.06 6.11 36.01 0.22 1.28 16 19 C -0.04 -0.48 5.55 -104.32 -0.58 -1.06 16 20 C -0.15 -1.63 9.82 -39.44 -0.39 -2.02 16 21 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 22 N -0.48 -5.88 10.36 -13.25 -0.14 -6.02 16 23 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 24 C -0.15 -1.59 9.82 -39.44 -0.39 -1.98 16 25 H 0.07 0.99 6.66 -51.93 -0.35 0.65 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.87 5.77 -51.93 -0.30 0.57 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 32 H 0.03 0.74 5.49 -51.93 -0.28 0.46 16 33 H 0.03 0.91 6.85 -51.93 -0.36 0.56 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 0.96 7.79 -51.93 -0.40 0.55 16 36 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 37 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -36.31 349.77 -7.60 -43.90 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.26 Total: -0.46 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.41 Total: -0.84 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.24 Total: -44.84 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.77 Total: -19.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.31 -7.60 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324078690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.977 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds