Wall clock time and date at job start Tue Mar 31 2020 07:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47476 * 308.94284 * 3 2 1 5 5 C 1.34772 * 119.99500 * 90.00007 * 4 3 2 6 6 O 1.21348 * 120.00495 * 355.80814 * 5 4 3 7 7 C 1.49454 * 119.99514 * 175.81297 * 5 4 3 8 8 O 1.21343 * 120.00504 * 85.35625 * 7 5 4 9 9 N 1.34782 * 119.99936 * 265.35378 * 7 5 4 10 10 C 1.46495 * 120.00034 * 175.43922 * 9 7 5 11 11 C 1.52999 * 109.47054 * 184.90062 * 10 9 7 12 12 C 1.50695 * 115.55435 * 57.02469 * 11 10 9 13 13 H 1.07998 * 120.00195 * 271.41278 * 12 11 10 14 14 C 1.37879 * 120.00081 * 91.40472 * 12 11 10 15 15 N 1.31507 * 120.00281 * 182.15718 * 14 12 11 16 16 Si 1.86803 * 119.99894 * 2.16163 * 14 12 11 17 17 H 1.48503 * 109.47098 * 93.33696 * 16 14 12 18 18 H 1.48499 * 109.47064 * 213.34165 * 16 14 12 19 19 H 1.48500 * 109.47036 * 333.34132 * 16 14 12 20 20 C 1.53001 * 117.49859 * 271.35833 * 11 10 9 21 21 C 1.53001 * 117.49758 * 202.70017 * 11 10 9 22 22 C 1.46500 * 119.99988 * 270.00403 * 4 3 2 23 23 C 1.53003 * 109.46641 * 304.12128 * 22 4 3 24 24 C 1.52996 * 109.47114 * 64.12067 * 22 4 3 25 25 H 4.40642 * 5.51468 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47316 * 188.94381 * 3 2 1 27 27 H 1.09005 * 109.47403 * 68.94403 * 3 2 1 28 28 H 0.97001 * 119.99855 * 355.16513 * 9 7 5 29 29 H 1.08993 * 109.47348 * 304.89766 * 10 9 7 30 30 H 1.08995 * 109.47377 * 64.90310 * 10 9 7 31 31 H 0.97005 * 120.00494 * 180.02562 * 15 14 12 32 32 H 1.09009 * 117.49972 * 359.97438 * 20 11 10 33 33 H 1.08998 * 117.50392 * 145.02060 * 20 11 10 34 34 H 1.09005 * 117.49505 * 214.97617 * 21 11 10 35 35 H 1.08999 * 117.50190 * 359.96987 * 21 11 10 36 36 H 1.08999 * 109.46853 * 184.12791 * 22 4 3 37 37 H 1.08999 * 109.46955 * 60.00725 * 23 22 4 38 38 H 1.09000 * 109.46641 * 179.97438 * 23 22 4 39 39 H 1.08990 * 109.47347 * 299.99977 * 23 22 4 40 40 H 1.09002 * 109.46890 * 60.00452 * 24 22 4 41 41 H 1.09001 * 109.46860 * 179.97438 * 24 22 4 42 42 H 1.08990 * 109.47613 * 300.00081 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8673 1.0743 5 6 3.3600 -2.1743 0.8347 6 8 3.0863 -2.6487 -0.2482 7 6 3.9468 -3.0394 1.9028 8 8 3.2252 -3.5527 2.7325 9 7 5.2774 -3.2496 1.9445 10 6 5.8640 -4.0145 3.0477 11 6 7.3888 -4.0023 2.9227 12 6 8.0275 -2.6378 2.8905 13 1 8.1590 -2.1252 1.9491 14 6 8.4437 -2.0436 4.0630 15 7 8.9623 -0.8353 4.0399 16 14 8.2712 -2.9551 5.6844 17 1 9.5316 -3.6828 5.9797 18 1 7.9946 -1.9826 6.7720 19 1 7.1504 -3.9247 5.5904 20 6 8.0378 -5.1059 2.0848 21 6 8.1630 -5.1287 3.6103 22 6 3.3787 -0.3145 2.4089 23 6 4.3554 0.8586 2.3042 24 6 2.0581 0.1732 3.0080 25 1 -1.0498 -0.0001 0.0004 26 1 3.0089 1.0160 0.1598 27 1 3.0095 -0.3684 -0.9591 28 1 5.8463 -2.8978 1.2420 29 1 5.5737 -3.5641 3.9968 30 1 5.5045 -5.0427 3.0084 31 1 9.2555 -0.4174 4.8648 32 1 7.3784 -5.8409 1.6230 33 1 8.9268 -4.8451 1.5108 34 1 9.1345 -4.8827 4.0391 35 1 7.5861 -5.8781 4.1521 36 1 3.8053 -1.0864 3.0494 37 1 3.9287 1.6305 1.6637 38 1 4.5364 1.2702 3.2971 39 1 5.2961 0.5112 1.8774 40 1 1.3623 -0.6625 3.0825 41 1 2.2395 0.5841 4.0012 42 1 1.6315 0.9451 2.3675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333081896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:16 Heat of formation + Delta-G solvation = 14.675148 kcal Electronic energy + Delta-G solvation = -24113.036993 eV Core-core repulsion = 20675.091484 eV Total energy + Delta-G solvation = -3437.945509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 8.49 seconds Orbital eigenvalues (eV) -40.65430 -38.58976 -37.13230 -36.87837 -33.72185 -33.52431 -32.21618 -31.54913 -28.43447 -27.19853 -26.82309 -25.48968 -23.23378 -21.88713 -21.56153 -19.75391 -19.23049 -18.23882 -17.86134 -16.60660 -16.52047 -16.01456 -15.30097 -15.08048 -14.97196 -14.33368 -14.16143 -14.01056 -13.57705 -13.33242 -13.18329 -13.06642 -12.87648 -12.60923 -12.31294 -12.16272 -12.09704 -11.29709 -11.26941 -11.18771 -11.04751 -10.97017 -10.56476 -10.53079 -10.29504 -10.20997 -9.71575 -9.32885 -9.26252 -9.03664 -8.77136 -8.64318 -8.53131 -6.24734 -4.30055 2.10310 2.28325 2.72011 2.76334 3.14205 3.20926 3.32565 3.37077 3.69651 4.28710 4.31385 4.59401 4.75434 4.88795 5.04066 5.05257 5.18002 5.23608 5.39737 5.57839 5.60360 5.65178 5.81484 5.84834 5.90888 5.92289 5.98000 6.09661 6.11795 6.30612 6.33136 6.36497 6.37689 6.61797 6.75957 6.89260 6.99898 7.09377 7.51672 7.57906 7.78884 7.85090 8.29457 8.34266 8.74766 9.38116 10.85900 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.005073 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.922451 B = 5517.996447 C = 6178.995574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.197 4.197 3 C 0.219 3.781 4 N -0.588 5.588 5 C 0.520 3.480 6 O -0.515 6.515 7 C 0.510 3.490 8 O -0.530 6.530 9 N -0.677 5.677 10 C 0.155 3.845 11 C -0.018 4.018 12 C -0.492 4.492 13 H 0.079 0.921 14 C 0.083 3.917 15 N -0.891 5.891 16 Si 0.878 3.122 17 H -0.280 1.280 18 H -0.295 1.295 19 H -0.256 1.256 20 C -0.179 4.179 21 C -0.191 4.191 22 C 0.126 3.874 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.216 0.784 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.411 0.589 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 3.434 -3.896 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.098 3.902 4 N -0.322 5.322 5 C 0.303 3.697 6 O -0.389 6.389 7 C 0.290 3.710 8 O -0.407 6.407 9 N -0.328 5.328 10 C 0.032 3.968 11 C -0.019 4.019 12 C -0.529 4.529 13 H 0.097 0.903 14 C -0.121 4.121 15 N -0.528 5.528 16 Si 0.706 3.294 17 H -0.206 1.206 18 H -0.222 1.222 19 H -0.180 1.180 20 C -0.217 4.217 21 C -0.228 4.228 22 C 0.023 3.977 23 C -0.220 4.220 24 C -0.218 4.218 25 H 0.233 0.767 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.247 0.753 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.805 2.960 -3.745 11.813 hybrid contribution 0.046 -0.241 0.750 0.789 sum -10.759 2.719 -2.996 11.494 Atomic orbital electron populations 1.24880 0.95872 1.00258 1.00002 1.23485 0.94867 1.00707 1.00761 1.18364 0.83797 0.95895 0.92138 1.48091 1.64386 1.07670 1.12051 1.20621 0.78779 0.82263 0.88039 1.90771 1.51414 1.72544 1.24123 1.19908 0.83746 0.82559 0.84801 1.90777 1.59994 1.50840 1.39042 1.45861 1.05511 1.53884 1.27497 1.21226 0.93528 0.93533 0.88526 1.19621 0.89327 0.91946 1.01024 1.20143 1.39475 0.98064 0.95223 0.90256 1.24960 0.93775 0.94448 0.98910 1.69877 1.40873 1.13821 1.28193 0.86884 0.79476 0.79758 0.83260 1.20574 1.22191 1.18049 1.22939 1.03257 1.02578 0.92897 1.22923 1.02280 1.02362 0.95284 1.21376 0.96442 0.97796 0.82075 1.22163 0.99550 0.97008 1.03320 1.22156 0.96768 1.01759 1.01105 0.76713 0.87305 0.87322 0.75345 0.91335 0.93212 0.92447 0.90755 0.89258 0.89164 0.90550 0.88389 0.92342 0.90680 0.90674 0.92142 0.91098 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 19.25 29.55 0.57 -1.57 16 2 C -0.20 -2.46 12.05 -37.12 -0.45 -2.91 16 3 C 0.22 2.60 5.41 -6.83 -0.04 2.56 16 4 N -0.59 -8.37 2.37 -169.92 -0.40 -8.77 16 5 C 0.52 9.05 7.51 -11.59 -0.09 8.97 16 6 O -0.51 -9.97 16.72 5.50 0.09 -9.87 16 7 C 0.51 9.63 5.55 -11.58 -0.06 9.56 16 8 O -0.53 -11.28 17.05 5.50 0.09 -11.19 16 9 N -0.68 -12.50 5.37 -60.74 -0.33 -12.82 16 10 C 0.15 3.07 5.40 -4.05 -0.02 3.05 16 11 C -0.02 -0.37 0.94 -155.66 -0.15 -0.52 16 12 C -0.49 -12.05 8.97 -34.44 -0.31 -12.36 16 13 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.89 -24.64 13.96 55.43 0.77 -23.87 16 16 Si 0.88 20.19 24.75 -169.99 -4.21 15.98 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.26 -5.62 5.87 56.52 0.33 -5.29 16 20 C -0.18 -3.32 9.94 -26.69 -0.27 -3.59 16 21 C -0.19 -3.74 7.16 -26.69 -0.19 -3.93 16 22 C 0.13 1.69 3.17 -67.93 -0.22 1.48 16 23 C -0.16 -1.95 9.09 37.16 0.34 -1.61 16 24 C -0.16 -1.88 8.75 37.16 0.33 -1.55 16 25 H 0.22 1.63 7.80 -54.10 -0.42 1.21 16 26 H 0.11 0.98 6.22 -51.93 -0.32 0.66 16 27 H 0.11 1.29 7.48 -51.93 -0.39 0.90 16 28 H 0.41 7.24 8.21 -40.82 -0.34 6.91 16 29 H 0.07 1.45 7.46 -51.93 -0.39 1.06 16 30 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.09 1.86 6.57 -51.93 -0.34 1.52 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.10 1.55 6.17 -51.93 -0.32 1.23 16 37 H 0.06 0.56 6.54 -51.93 -0.34 0.23 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.65 6.92 -51.93 -0.36 0.29 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -30.24 353.78 -5.52 -35.76 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.22 Total: 9.84 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.65 Total: -0.39 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.04 Total: -45.46 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.19 Total: -21.06 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.21 Total: 15.98 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.24 -5.52 -35.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333081896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.435 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.49 seconds