Wall clock time and date at job start Tue Mar 31 2020 07:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47476 * 308.94284 * 3 2 1 5 5 C 1.34772 * 119.99500 * 90.00007 * 4 3 2 6 6 O 1.21348 * 120.00495 * 355.80814 * 5 4 3 7 7 C 1.49454 * 119.99514 * 175.81297 * 5 4 3 8 8 O 1.21343 * 120.00504 * 85.35625 * 7 5 4 9 9 N 1.34782 * 119.99936 * 265.35378 * 7 5 4 10 10 C 1.46495 * 120.00034 * 175.43922 * 9 7 5 11 11 C 1.52999 * 109.47054 * 184.90062 * 10 9 7 12 12 C 1.50695 * 115.55435 * 57.02469 * 11 10 9 13 13 H 1.07998 * 120.00195 * 271.41278 * 12 11 10 14 14 C 1.37879 * 120.00081 * 91.40472 * 12 11 10 15 15 N 1.31507 * 120.00281 * 182.15718 * 14 12 11 16 16 Si 1.86803 * 119.99894 * 2.16163 * 14 12 11 17 17 H 1.48503 * 109.47098 * 93.33696 * 16 14 12 18 18 H 1.48499 * 109.47064 * 213.34165 * 16 14 12 19 19 H 1.48500 * 109.47036 * 333.34132 * 16 14 12 20 20 C 1.53001 * 117.49859 * 271.35833 * 11 10 9 21 21 C 1.53001 * 117.49758 * 202.70017 * 11 10 9 22 22 C 1.46500 * 119.99988 * 270.00403 * 4 3 2 23 23 C 1.53003 * 109.46641 * 304.12128 * 22 4 3 24 24 C 1.52996 * 109.47114 * 64.12067 * 22 4 3 25 25 H 4.40642 * 5.51468 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47316 * 188.94381 * 3 2 1 27 27 H 1.09005 * 109.47403 * 68.94403 * 3 2 1 28 28 H 0.97001 * 119.99855 * 355.16513 * 9 7 5 29 29 H 1.08993 * 109.47348 * 304.89766 * 10 9 7 30 30 H 1.08995 * 109.47377 * 64.90310 * 10 9 7 31 31 H 0.97005 * 120.00494 * 180.02562 * 15 14 12 32 32 H 1.09009 * 117.49972 * 359.97438 * 20 11 10 33 33 H 1.08998 * 117.50392 * 145.02060 * 20 11 10 34 34 H 1.09005 * 117.49505 * 214.97617 * 21 11 10 35 35 H 1.08999 * 117.50190 * 359.96987 * 21 11 10 36 36 H 1.08999 * 109.46853 * 184.12791 * 22 4 3 37 37 H 1.08999 * 109.46955 * 60.00725 * 23 22 4 38 38 H 1.09000 * 109.46641 * 179.97438 * 23 22 4 39 39 H 1.08990 * 109.47347 * 299.99977 * 23 22 4 40 40 H 1.09002 * 109.46890 * 60.00452 * 24 22 4 41 41 H 1.09001 * 109.46860 * 179.97438 * 24 22 4 42 42 H 1.08990 * 109.47613 * 300.00081 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8673 1.0743 5 6 3.3600 -2.1743 0.8347 6 8 3.0863 -2.6487 -0.2482 7 6 3.9468 -3.0394 1.9028 8 8 3.2252 -3.5527 2.7325 9 7 5.2774 -3.2496 1.9445 10 6 5.8640 -4.0145 3.0477 11 6 7.3888 -4.0023 2.9227 12 6 8.0275 -2.6378 2.8905 13 1 8.1590 -2.1252 1.9491 14 6 8.4437 -2.0436 4.0630 15 7 8.9623 -0.8353 4.0399 16 14 8.2712 -2.9551 5.6844 17 1 9.5316 -3.6828 5.9797 18 1 7.9946 -1.9826 6.7720 19 1 7.1504 -3.9247 5.5904 20 6 8.0378 -5.1059 2.0848 21 6 8.1630 -5.1287 3.6103 22 6 3.3787 -0.3145 2.4089 23 6 4.3554 0.8586 2.3042 24 6 2.0581 0.1732 3.0080 25 1 -1.0498 -0.0001 0.0004 26 1 3.0089 1.0160 0.1598 27 1 3.0095 -0.3684 -0.9591 28 1 5.8463 -2.8978 1.2420 29 1 5.5737 -3.5641 3.9968 30 1 5.5045 -5.0427 3.0084 31 1 9.2555 -0.4174 4.8648 32 1 7.3784 -5.8409 1.6230 33 1 8.9268 -4.8451 1.5108 34 1 9.1345 -4.8827 4.0391 35 1 7.5861 -5.8781 4.1521 36 1 3.8053 -1.0864 3.0494 37 1 3.9287 1.6305 1.6637 38 1 4.5364 1.2702 3.2971 39 1 5.2961 0.5112 1.8774 40 1 1.3623 -0.6625 3.0825 41 1 2.2395 0.5841 4.0012 42 1 1.6315 0.9451 2.3675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333081896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:12 Heat of formation + Delta-G solvation = -5.151276 kcal Electronic energy + Delta-G solvation = -24113.896731 eV Core-core repulsion = 20675.091484 eV Total energy + Delta-G solvation = -3438.805248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02874 -40.04152 -38.72170 -38.15071 -35.27969 -34.46959 -34.17737 -32.63798 -29.67574 -28.40345 -28.08058 -27.28877 -24.61319 -23.41276 -22.77742 -21.32636 -20.63153 -19.54590 -18.91110 -18.33273 -17.89563 -17.48622 -16.95511 -16.40783 -16.19118 -15.92248 -15.57248 -15.17975 -14.89704 -14.71627 -14.68828 -14.35473 -14.16669 -14.12103 -13.80744 -13.38511 -13.07840 -13.06747 -12.74815 -12.60080 -12.35419 -12.16794 -12.07031 -11.98661 -11.56316 -11.50260 -11.10097 -11.00033 -10.82122 -10.61914 -10.33742 -10.21115 -10.12092 -8.25197 -6.32030 0.85272 0.90214 1.35290 1.37203 1.44851 1.53818 1.87193 1.96364 2.39820 2.45803 3.08405 3.11543 3.39077 3.46155 3.67782 3.98435 4.02573 4.15972 4.23397 4.33045 4.38855 4.44670 4.50872 4.64768 4.70264 4.72377 4.86022 4.86888 4.90841 5.03177 5.08430 5.09219 5.18651 5.26614 5.29862 5.34253 5.48227 5.71444 5.86596 6.26306 6.32177 6.52732 6.65277 6.75376 6.81048 7.38434 8.88364 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.005073 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.922451 B = 5517.996447 C = 6178.995574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.237 4.237 3 C 0.215 3.785 4 N -0.576 5.576 5 C 0.520 3.480 6 O -0.540 6.540 7 C 0.512 3.488 8 O -0.556 6.556 9 N -0.673 5.673 10 C 0.162 3.838 11 C -0.040 4.040 12 C -0.479 4.479 13 H 0.048 0.952 14 C 0.035 3.965 15 N -0.936 5.936 16 Si 0.925 3.075 17 H -0.275 1.275 18 H -0.304 1.304 19 H -0.237 1.237 20 C -0.159 4.159 21 C -0.189 4.189 22 C 0.122 3.878 23 C -0.155 4.155 24 C -0.151 4.151 25 H 0.246 0.754 26 H 0.139 0.861 27 H 0.106 0.894 28 H 0.414 0.586 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 3.070 -3.879 12.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.238 4.238 3 C 0.095 3.905 4 N -0.309 5.309 5 C 0.302 3.698 6 O -0.416 6.416 7 C 0.293 3.707 8 O -0.435 6.435 9 N -0.323 5.323 10 C 0.038 3.962 11 C -0.041 4.041 12 C -0.516 4.516 13 H 0.066 0.934 14 C -0.164 4.164 15 N -0.575 5.575 16 Si 0.751 3.249 17 H -0.201 1.201 18 H -0.231 1.231 19 H -0.160 1.160 20 C -0.196 4.196 21 C -0.227 4.227 22 C 0.020 3.980 23 C -0.213 4.213 24 C -0.209 4.209 25 H 0.263 0.737 26 H 0.157 0.843 27 H 0.124 0.876 28 H 0.250 0.750 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.123 2.606 -3.738 12.951 hybrid contribution 0.432 -0.078 0.667 0.798 sum -11.691 2.529 -3.071 12.349 Atomic orbital electron populations 1.25715 0.96778 0.98653 0.98240 1.23709 0.95432 1.02240 1.02380 1.18612 0.84124 0.96659 0.91075 1.48152 1.62984 1.06784 1.13009 1.20349 0.79004 0.83197 0.87240 1.90754 1.52918 1.73231 1.24727 1.20184 0.83528 0.82261 0.84753 1.90748 1.60556 1.51912 1.40299 1.45828 1.05593 1.53641 1.27263 1.21076 0.92649 0.94267 0.88179 1.19489 0.89763 0.90745 1.04112 1.20245 1.38242 0.99485 0.93669 0.93386 1.25607 0.93977 0.94953 1.01865 1.69997 1.43163 1.15539 1.28771 0.86124 0.80138 0.78960 0.79641 1.20054 1.23142 1.16048 1.22964 1.02922 1.01197 0.92496 1.22996 1.01648 1.01722 0.96287 1.21457 0.97799 0.97428 0.81317 1.22105 0.98141 0.97005 1.04061 1.22086 0.95134 1.01517 1.02129 0.73748 0.84328 0.87600 0.74996 0.92913 0.91704 0.92678 0.88123 0.89568 0.90237 0.88138 0.91224 0.89401 0.90298 0.92988 0.93746 0.89635 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 19.25 74.32 1.43 -2.06 16 2 C -0.24 -5.49 12.05 31.13 0.38 -5.12 16 3 C 0.22 4.82 5.41 84.57 0.46 5.28 16 4 N -0.58 -16.15 2.37 -809.87 -1.92 -18.07 16 5 C 0.52 18.16 7.51 87.27 0.65 18.81 16 6 O -0.54 -20.96 16.72 -3.24 -0.05 -21.01 16 7 C 0.51 19.43 5.55 87.27 0.48 19.91 16 8 O -0.56 -23.79 17.05 -3.22 -0.05 -23.84 16 9 N -0.67 -24.83 5.37 -464.43 -2.49 -27.33 16 10 C 0.16 6.23 5.40 86.38 0.47 6.70 16 11 C -0.04 -1.61 0.94 -52.93 -0.05 -1.66 16 12 C -0.48 -23.70 8.97 25.60 0.23 -23.47 16 13 H 0.05 2.63 8.06 -2.91 -0.02 2.60 16 14 C 0.04 1.83 5.47 84.66 0.46 2.30 16 15 N -0.94 -53.06 13.96 21.45 0.30 -52.76 16 16 Si 0.92 41.28 24.75 68.60 1.70 42.98 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.24 -9.77 5.87 99.48 0.58 -9.19 16 20 C -0.16 -5.50 9.94 30.62 0.30 -5.19 16 21 C -0.19 -6.92 7.16 30.62 0.22 -6.70 16 22 C 0.12 3.23 3.17 44.99 0.14 3.37 16 23 C -0.16 -3.58 9.09 71.98 0.65 -2.93 16 24 C -0.15 -3.32 8.75 71.98 0.63 -2.69 16 25 H 0.25 2.90 7.80 -4.43 -0.03 2.86 16 26 H 0.14 2.18 6.22 -2.39 -0.01 2.16 16 27 H 0.11 2.44 7.48 -2.38 -0.02 2.42 16 28 H 0.41 14.75 8.21 -92.71 -0.76 13.99 16 29 H 0.05 2.20 7.46 -2.39 -0.02 2.18 16 30 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 31 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 32 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 33 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.08 3.11 6.57 -2.38 -0.02 3.09 16 35 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.07 2.25 6.17 -2.39 -0.01 2.24 16 37 H 0.09 1.48 6.54 -2.39 -0.02 1.47 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 1.45 6.92 -2.39 -0.02 1.43 16 Total: -1.00 -65.85 353.78 4.08 -61.77 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.14 Total: 31.71 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.46 Total: 6.55 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.11 Total: -98.16 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.11 Total: -44.86 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.70 Total: 42.98 kcal Total: -65.85 4.08 -61.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333081896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.619 kcal (2) G-P(sol) polarization free energy of solvation -65.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds