Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34815 * 117.00293 * 89.99523 * 13 3 2 15 15 O 1.21549 * 119.99801 * 0.02562 * 14 13 3 16 16 C 1.47002 * 119.99840 * 179.97438 * 14 13 3 17 17 C 1.37277 * 127.05387 * 179.70817 * 16 14 13 18 18 C 1.40059 * 105.88483 * 179.97438 * 17 16 14 19 19 N 1.30129 * 107.73800 * 0.29666 * 18 17 16 20 20 N 1.28820 * 110.79578 * 359.82316 * 19 18 17 21 21 C 1.46505 * 125.15071 * 180.02562 * 20 19 18 22 22 C 1.50868 * 123.21774 * 179.97438 * 18 17 16 23 23 C 1.53399 * 108.18693 * 343.58505 * 22 18 17 24 24 C 1.53031 * 109.87582 * 50.72912 * 23 22 18 25 25 C 1.50395 * 129.90020 * 0.99979 * 17 16 14 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47274 * 269.97134 * 21 20 19 33 33 H 1.09003 * 109.47201 * 29.97754 * 21 20 19 34 34 H 1.09002 * 109.46936 * 149.97792 * 21 20 19 35 35 H 1.09004 * 109.71855 * 103.25559 * 22 18 17 36 36 H 1.08994 * 109.72265 * 223.86343 * 22 18 17 37 37 H 1.08991 * 109.40359 * 170.85453 * 23 22 18 38 38 H 1.08996 * 109.39911 * 290.60337 * 23 22 18 39 39 H 1.09002 * 109.44088 * 48.64854 * 24 23 22 40 40 H 1.09008 * 109.43249 * 168.51032 * 24 23 22 41 41 H 1.08998 * 109.89505 * 43.34155 * 25 17 16 42 42 H 1.08993 * 109.54426 * 282.71507 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4675 2.7282 -1.2559 15 8 -0.2282 2.7405 -0.2593 16 6 0.0136 3.4083 -2.4776 17 6 -1.1641 4.0909 -2.6554 18 6 -1.1412 4.5572 -3.9759 19 7 -0.0264 4.1604 -4.5173 20 7 0.6765 3.4857 -3.6746 21 6 1.9865 2.8919 -3.9533 22 6 -2.2596 5.3648 -4.5867 23 6 -3.5025 5.2076 -3.7014 24 6 -3.1421 5.4966 -2.2425 25 6 -2.2837 4.3520 -1.6858 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 1.8530 1.8788 -4.3326 33 1 2.5069 3.4934 -4.6987 34 1 2.5743 2.8617 -3.0359 35 1 -1.9718 6.4152 -4.6333 36 1 -2.4732 4.9972 -5.5903 37 1 -4.2717 5.9065 -4.0297 38 1 -3.8807 4.1889 -3.7861 39 1 -2.5833 6.4308 -2.1851 40 1 -4.0553 5.5843 -1.6539 41 1 -1.8757 4.6370 -0.7161 42 1 -2.8911 3.4533 -1.5797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344525828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -32.453431 kcal Electronic energy + Delta-G solvation = -24275.641387 eV Core-core repulsion = 20835.652229 eV Total energy + Delta-G solvation = -3439.989158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.50203 -39.40869 -37.04863 -35.85569 -33.63145 -32.57462 -31.75733 -31.38918 -29.23739 -27.43753 -27.05187 -24.01089 -23.30022 -22.72446 -21.89504 -20.24645 -19.41456 -19.04628 -17.31691 -16.73920 -16.27801 -15.87199 -15.31361 -15.10735 -14.71574 -14.63544 -13.93938 -13.82011 -13.39990 -13.03771 -12.83456 -12.81602 -12.64279 -12.41348 -12.11647 -11.74258 -11.55473 -11.48197 -11.26139 -11.17305 -11.01796 -10.87405 -10.80471 -10.72792 -10.35080 -10.13174 -9.90977 -9.77918 -9.47205 -8.91439 -8.89441 -8.52897 -8.43607 -6.25516 -4.33595 1.44705 2.64289 2.66342 3.20935 3.24606 3.26299 3.47945 3.49581 4.26406 4.34545 4.81794 4.87548 4.98034 5.06744 5.17067 5.25830 5.37216 5.41463 5.51733 5.60283 5.60745 5.69802 5.86860 5.92593 5.97342 6.06753 6.14335 6.18244 6.24992 6.32785 6.36216 6.41338 6.68374 6.79251 6.87339 6.94854 7.09399 7.14030 7.52277 7.65141 7.82916 8.06155 8.18302 8.51184 8.77035 9.31805 10.81098 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.004304 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.765243 B = 6504.266579 C = 7070.068809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 O -0.356 6.356 14 C 0.528 3.472 15 O -0.494 6.494 16 C -0.008 4.008 17 C -0.129 4.129 18 C 0.017 3.983 19 N -0.269 5.269 20 N -0.274 5.274 21 C 0.085 3.915 22 C -0.027 4.027 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.044 4.044 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.110 0.890 30 H 0.041 0.959 31 H 0.268 0.732 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 6.950 -10.888 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.563 4.563 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.272 6.272 14 C 0.370 3.630 15 O -0.382 6.382 16 C -0.132 4.132 17 C -0.140 4.140 18 C -0.141 4.141 19 N -0.102 5.102 20 N -0.063 5.063 21 C -0.054 4.054 22 C -0.066 4.066 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.082 4.082 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.764 6.749 -11.347 15.846 hybrid contribution 0.707 -0.304 0.910 1.192 sum -8.056 6.445 -10.437 14.675 Atomic orbital electron populations 1.21866 0.98313 0.99129 1.00782 1.22027 0.92682 0.99213 1.03417 1.20748 0.95063 0.88752 0.78280 0.93295 1.20954 0.89423 1.39450 1.06430 0.91427 1.24868 0.99240 0.94645 0.95009 1.69873 1.35542 1.37469 1.09407 0.86342 0.83788 0.78510 0.77561 1.19984 1.20975 1.19922 1.86536 1.33361 1.62654 1.44661 1.19519 0.81286 0.76717 0.85482 1.90824 1.55515 1.58264 1.33555 1.20447 0.95937 1.08696 0.88077 1.20365 0.95675 1.01504 0.96411 1.21813 0.95330 1.04140 0.92825 1.72761 1.05678 1.11171 1.20619 1.45871 1.16364 1.37567 1.06530 1.22387 0.78935 0.98596 1.05512 1.19956 0.90158 0.98100 0.98410 1.21575 0.96547 1.02295 0.95043 1.21625 0.99640 0.98580 0.95699 1.20035 0.93004 0.98530 0.96668 0.92679 0.94734 0.95043 0.87207 0.93992 0.92222 0.89805 0.89085 0.86543 0.90344 0.90387 0.91203 0.91546 0.91710 0.91349 0.89791 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.78 16 2 C -0.14 -3.26 5.49 -26.73 -0.15 -3.40 16 3 C 0.22 5.70 2.25 -27.88 -0.06 5.63 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.00 8.90 -34.44 -0.31 -14.30 16 6 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.27 11.29 55.43 0.63 -23.64 16 9 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 O -0.36 -8.04 7.31 -40.81 -0.30 -8.33 16 14 C 0.53 11.27 6.38 34.28 0.22 11.49 16 15 O -0.49 -11.31 12.97 -19.30 -0.25 -11.56 16 16 C -0.01 -0.14 6.94 -82.33 -0.57 -0.71 16 17 C -0.13 -2.12 6.01 -104.44 -0.63 -2.75 16 18 C 0.02 0.26 7.13 -82.55 -0.59 -0.33 16 19 N -0.27 -4.39 11.89 33.64 0.40 -3.99 16 20 N -0.27 -4.62 3.77 -64.12 -0.24 -4.86 16 21 C 0.09 1.19 10.82 59.85 0.65 1.84 16 22 C -0.03 -0.29 6.32 -27.59 -0.17 -0.47 16 23 C -0.12 -1.08 5.85 -26.51 -0.16 -1.24 16 24 C -0.12 -1.23 5.89 -26.44 -0.16 -1.39 16 25 C -0.04 -0.62 5.53 -27.76 -0.15 -0.78 16 26 H 0.05 1.24 7.79 -51.93 -0.40 0.83 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 29 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.12 1.81 6.18 -51.93 -0.32 1.49 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 40 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.08 1.29 7.67 -51.93 -0.40 0.89 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -29.68 335.86 -7.89 -37.57 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.31 Total: 1.96 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.85 Total: -7.56 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.78 Total: -32.49 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.55 Total: -19.89 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.68 -7.89 -37.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344525828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.116 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds