Wall clock time and date at job start Tue Mar 31 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34815 * 117.00293 * 89.99523 * 13 3 2 15 15 O 1.21549 * 119.99801 * 0.02562 * 14 13 3 16 16 C 1.47002 * 119.99840 * 179.97438 * 14 13 3 17 17 C 1.37277 * 127.05387 * 179.70817 * 16 14 13 18 18 C 1.40059 * 105.88483 * 179.97438 * 17 16 14 19 19 N 1.30129 * 107.73800 * 0.29666 * 18 17 16 20 20 N 1.28820 * 110.79578 * 359.82316 * 19 18 17 21 21 C 1.46505 * 125.15071 * 180.02562 * 20 19 18 22 22 C 1.50868 * 123.21774 * 179.97438 * 18 17 16 23 23 C 1.53399 * 108.18693 * 343.58505 * 22 18 17 24 24 C 1.53031 * 109.87582 * 50.72912 * 23 22 18 25 25 C 1.50395 * 129.90020 * 0.99979 * 17 16 14 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47274 * 269.97134 * 21 20 19 33 33 H 1.09003 * 109.47201 * 29.97754 * 21 20 19 34 34 H 1.09002 * 109.46936 * 149.97792 * 21 20 19 35 35 H 1.09004 * 109.71855 * 103.25559 * 22 18 17 36 36 H 1.08994 * 109.72265 * 223.86343 * 22 18 17 37 37 H 1.08991 * 109.40359 * 170.85453 * 23 22 18 38 38 H 1.08996 * 109.39911 * 290.60337 * 23 22 18 39 39 H 1.09002 * 109.44088 * 48.64854 * 24 23 22 40 40 H 1.09008 * 109.43249 * 168.51032 * 24 23 22 41 41 H 1.08998 * 109.89505 * 43.34155 * 25 17 16 42 42 H 1.08993 * 109.54426 * 282.71507 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4675 2.7282 -1.2559 15 8 -0.2282 2.7405 -0.2593 16 6 0.0136 3.4083 -2.4776 17 6 -1.1641 4.0909 -2.6554 18 6 -1.1412 4.5572 -3.9759 19 7 -0.0264 4.1604 -4.5173 20 7 0.6765 3.4857 -3.6746 21 6 1.9865 2.8919 -3.9533 22 6 -2.2596 5.3648 -4.5867 23 6 -3.5025 5.2076 -3.7014 24 6 -3.1421 5.4966 -2.2425 25 6 -2.2837 4.3520 -1.6858 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 1.8530 1.8788 -4.3326 33 1 2.5069 3.4934 -4.6987 34 1 2.5743 2.8617 -3.0359 35 1 -1.9718 6.4152 -4.6333 36 1 -2.4732 4.9972 -5.5903 37 1 -4.2717 5.9065 -4.0297 38 1 -3.8807 4.1889 -3.7861 39 1 -2.5833 6.4308 -2.1851 40 1 -4.0553 5.5843 -1.6539 41 1 -1.8757 4.6370 -0.7161 42 1 -2.8911 3.4533 -1.5797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344525828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:26 Heat of formation + Delta-G solvation = -47.970458 kcal Electronic energy + Delta-G solvation = -24276.314256 eV Core-core repulsion = 20835.652229 eV Total energy + Delta-G solvation = -3440.662027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.77285 -41.17977 -38.09833 -37.61049 -35.56098 -33.83190 -33.32073 -32.85998 -30.41754 -29.30230 -28.22305 -25.74198 -24.61985 -24.20595 -22.92526 -22.06133 -21.01065 -20.16608 -18.92182 -18.54586 -17.72494 -17.59250 -16.76352 -16.61633 -16.41204 -15.72156 -15.20865 -14.92148 -14.81173 -14.69205 -14.32427 -14.06103 -13.79088 -13.67081 -13.51504 -13.34755 -13.30430 -13.10722 -12.83516 -12.70155 -12.59588 -12.35086 -12.16294 -11.82182 -11.72615 -11.69719 -11.51801 -11.38435 -11.18939 -10.87068 -10.55601 -10.21296 -9.66025 -8.28628 -6.45620 -0.01858 1.37923 1.42605 1.44463 1.44785 1.52641 1.83203 1.89457 2.38939 3.01656 3.24795 3.59167 3.90974 4.03315 4.11844 4.15102 4.29877 4.31292 4.33758 4.35490 4.44740 4.54123 4.59653 4.66557 4.70489 4.74092 4.78993 5.02293 5.06476 5.07700 5.16765 5.19590 5.23992 5.27091 5.34325 5.47626 5.51489 5.54175 5.62741 5.71808 5.88331 6.04510 6.55723 6.79255 6.98300 7.24956 8.77999 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.004304 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.765243 B = 6504.266579 C = 7070.068809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.263 1.263 13 O -0.353 6.353 14 C 0.526 3.474 15 O -0.518 6.518 16 C -0.044 4.044 17 C -0.128 4.128 18 C 0.019 3.981 19 N -0.271 5.271 20 N -0.278 5.278 21 C 0.082 3.918 22 C -0.028 4.028 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.048 4.048 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.271 0.729 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 7.839 -12.834 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.027 0.973 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.187 1.187 13 O -0.270 6.270 14 C 0.370 3.630 15 O -0.407 6.407 16 C -0.167 4.167 17 C -0.139 4.139 18 C -0.139 4.139 19 N -0.104 5.104 20 N -0.068 5.068 21 C -0.057 4.057 22 C -0.067 4.067 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.087 4.087 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.379 7.641 -13.312 17.988 hybrid contribution 0.831 -0.530 1.488 1.785 sum -8.548 7.111 -11.824 16.231 Atomic orbital electron populations 1.21712 0.96516 1.00588 0.99917 1.21875 0.94223 0.98048 1.02519 1.20460 0.94715 0.89164 0.78128 0.97339 1.21258 0.90111 1.40191 1.07086 0.91255 1.25754 1.04020 0.93848 0.94354 1.70000 1.37495 1.37743 1.09811 0.85289 0.77864 0.78696 0.77918 1.19545 1.20422 1.18743 1.86541 1.34381 1.62993 1.43075 1.19955 0.80443 0.76218 0.86346 1.90800 1.55918 1.59218 1.34741 1.20319 0.97656 1.10718 0.87996 1.20838 0.95246 1.00174 0.97669 1.22582 0.95730 1.03513 0.92099 1.72780 1.06169 1.11018 1.20472 1.46097 1.16992 1.37775 1.05935 1.22517 0.78067 0.99854 1.05266 1.20224 0.88973 0.98281 0.99181 1.21593 0.96626 1.03120 0.93613 1.21631 0.99688 0.96728 0.96926 1.20142 0.92895 1.00112 0.95502 0.94287 0.91985 0.95093 0.89276 0.93455 0.92004 0.88668 0.86239 0.88589 0.88621 0.88723 0.87811 0.91898 0.91474 0.89270 0.91944 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.56 71.98 0.62 -5.11 16 2 C -0.13 -6.37 5.49 30.59 0.17 -6.21 16 3 C 0.23 12.15 2.25 29.85 0.07 12.21 16 4 H 0.01 0.53 7.16 -2.38 -0.02 0.51 16 5 C -0.55 -30.09 8.90 25.60 0.23 -29.86 16 6 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.10 5.29 84.66 0.45 1.54 16 8 N -0.91 -51.20 11.29 21.45 0.24 -50.96 16 9 Si 0.98 41.82 29.54 68.60 2.03 43.85 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 13 O -0.35 -16.67 7.31 -57.27 -0.42 -17.09 16 14 C 0.53 23.49 6.38 70.12 0.45 23.93 16 15 O -0.52 -25.01 12.97 19.67 0.26 -24.75 16 16 C -0.04 -1.66 6.94 40.40 0.28 -1.38 16 17 C -0.13 -4.19 6.01 -19.74 -0.12 -4.30 16 18 C 0.02 0.53 7.13 43.31 0.31 0.84 16 19 N -0.27 -8.45 11.89 -47.47 -0.56 -9.01 16 20 N -0.28 -9.29 3.77 -356.76 -1.34 -10.63 16 21 C 0.08 2.26 10.82 127.77 1.38 3.64 16 22 C -0.03 -0.50 6.32 30.04 0.19 -0.31 16 23 C -0.11 -1.66 5.85 30.74 0.18 -1.48 16 24 C -0.11 -2.07 5.89 30.78 0.18 -1.89 16 25 C -0.05 -1.35 5.53 29.93 0.17 -1.19 16 26 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.03 1.33 6.06 -2.38 -0.01 1.32 16 29 H 0.09 4.82 5.95 -2.39 -0.01 4.80 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.10 3.06 6.18 -2.39 -0.01 3.05 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 39 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 2.00 7.67 -2.39 -0.02 1.98 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -66.09 335.86 5.76 -60.34 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.02 Total: 17.82 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.54 Total: -9.55 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.67 Total: -70.60 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.16 Total: -41.84 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -66.09 5.76 -60.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344525828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.365 kcal (2) G-P(sol) polarization free energy of solvation -66.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds