Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 H 1.08999 * 109.47592 * 305.00542 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00012 * 3 2 1 6 6 H 1.08001 * 120.00125 * 239.99828 * 5 3 2 7 7 C 1.37878 * 119.99897 * 60.00342 * 5 3 2 8 8 N 1.31512 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00060 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47399 * 89.99946 * 9 7 5 11 11 H 1.48498 * 109.47194 * 209.99964 * 9 7 5 12 12 H 1.48503 * 109.47201 * 330.00139 * 9 7 5 13 13 O 1.45207 * 109.47038 * 65.00329 * 3 2 1 14 14 C 1.34721 * 116.99784 * 270.00164 * 13 3 2 15 15 O 1.21486 * 120.00709 * 359.97438 * 14 13 3 16 16 C 1.47592 * 119.99836 * 180.02562 * 14 13 3 17 17 N 1.32253 * 126.68436 * 0.20903 * 16 14 13 18 18 N 1.28837 * 110.14264 * 180.17103 * 17 16 14 19 19 H 0.97001 * 124.97781 * 179.83579 * 18 17 16 20 20 C 1.34329 * 110.04929 * 359.56268 * 18 17 16 21 21 C 1.35567 * 107.23080 * 0.34286 * 20 18 17 22 22 C 1.50378 * 124.62620 * 179.83931 * 21 20 18 23 23 C 1.53473 * 108.28322 * 343.76473 * 22 21 20 24 24 H 1.08998 * 109.46949 * 289.46831 * 23 22 21 25 25 C 1.53004 * 109.45701 * 169.49090 * 23 22 21 26 26 C 1.53105 * 109.50995 * 49.48637 * 23 22 21 27 27 C 1.50718 * 128.89662 * 180.45753 * 20 18 17 28 28 H 1.08997 * 109.47285 * 60.00016 * 1 2 3 29 29 H 1.08998 * 109.46693 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47214 * 299.99487 * 1 2 3 31 31 H 1.09000 * 109.47214 * 240.00512 * 2 1 3 32 32 H 1.09001 * 109.47688 * 120.00272 * 2 1 3 33 33 H 0.96998 * 120.00244 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.70257 * 224.06875 * 22 21 20 35 35 H 1.09000 * 109.73156 * 103.48029 * 22 21 20 36 36 H 1.09005 * 109.47066 * 299.96192 * 25 23 22 37 37 H 1.08996 * 109.47375 * 59.96742 * 25 23 22 38 38 H 1.08999 * 109.47073 * 179.97438 * 25 23 22 39 39 H 1.09004 * 109.44552 * 169.89775 * 26 23 22 40 40 H 1.08998 * 109.41649 * 49.98280 * 26 23 22 41 41 H 1.08999 * 109.69019 * 282.95447 * 27 20 18 42 42 H 1.09001 * 109.69012 * 43.48961 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3377 -2.1734 9 14 6.0048 0.8816 -1.3819 10 1 6.5549 -0.3499 -0.7604 11 1 6.3828 0.9228 -2.8174 12 1 6.5568 2.0741 -0.6902 13 8 1.6558 2.0917 1.2408 14 6 0.4682 2.7276 1.2562 15 8 -0.2272 2.7400 0.2601 16 6 0.0126 3.4104 2.4828 17 7 0.6609 3.4842 3.6332 18 7 -0.0306 4.1533 4.4899 19 1 0.2414 4.3360 5.4029 20 6 -1.1807 4.5659 3.9320 21 6 -1.1929 4.1121 2.6546 22 6 -2.3079 4.3495 1.6740 23 6 -3.5479 4.8043 2.4557 24 1 -3.9446 3.9656 3.0276 25 6 -4.6129 5.3031 1.4769 26 6 -3.1629 5.9369 3.4113 27 6 -2.2905 5.3815 4.5442 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8292 -0.0607 -2.9500 34 1 -2.5293 3.4263 1.1386 35 1 -2.0158 5.1243 0.9651 36 1 -4.2164 6.1421 0.9050 37 1 -4.8871 4.4969 0.7965 38 1 -5.4938 5.6257 2.0318 39 1 -4.0659 6.3792 3.8322 40 1 -2.6065 6.6986 2.8650 41 1 -2.8937 4.7499 5.1964 42 1 -1.8669 6.2047 5.1196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344851201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = -39.962921 kcal Electronic energy + Delta-G solvation = -23878.725929 eV Core-core repulsion = 20438.411135 eV Total energy + Delta-G solvation = -3440.314794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.75950 -39.21232 -37.64265 -35.65693 -33.42249 -32.69269 -31.61337 -31.25059 -29.66210 -27.26970 -26.52631 -24.42005 -23.50426 -22.89076 -21.36024 -20.26004 -19.31086 -19.02105 -17.69930 -16.87351 -16.38451 -15.95691 -15.32720 -14.97208 -14.74838 -14.41883 -14.35755 -13.77198 -13.33452 -13.16060 -12.92462 -12.74520 -12.54260 -12.20550 -12.02178 -11.77852 -11.39409 -11.26854 -11.11131 -11.05240 -10.91173 -10.79845 -10.66066 -10.57569 -10.43610 -10.21756 -9.75415 -9.61481 -9.28886 -9.20329 -8.72484 -8.58692 -8.38243 -6.11847 -4.17925 1.77219 2.13741 2.84050 3.29536 3.34658 3.39087 3.72365 3.79623 4.35842 4.43157 4.53647 4.61509 4.82836 4.97193 5.08667 5.20058 5.20918 5.34870 5.40927 5.57605 5.67973 5.71013 5.78654 5.84080 5.90175 6.05778 6.11686 6.30675 6.32057 6.32912 6.38393 6.50107 6.60063 6.96010 7.02015 7.06182 7.24792 7.31685 7.68666 7.81241 7.92172 8.03923 8.23396 8.73393 8.98726 9.46735 10.95102 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.003904 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.302914 B = 7169.792276 C = 7738.456282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.340 6.340 14 C 0.540 3.460 15 O -0.505 6.505 16 C 0.020 3.980 17 N -0.234 5.234 18 N -0.377 5.377 19 H 0.443 0.557 20 C 0.000 4.000 21 C -0.142 4.142 22 C -0.038 4.038 23 C -0.093 4.093 24 H 0.072 0.928 25 C -0.146 4.146 26 C -0.110 4.110 27 C -0.044 4.044 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.220 10.081 12.944 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.255 6.255 14 C 0.382 3.618 15 O -0.392 6.392 16 C -0.138 4.138 17 N -0.071 5.071 18 N -0.090 5.090 19 H 0.288 0.712 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.076 4.076 23 C -0.112 4.112 24 H 0.090 0.910 25 C -0.204 4.204 26 C -0.148 4.148 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.365 9.594 12.876 20.892 hybrid contribution 0.514 0.162 -0.005 0.539 sum -12.852 9.756 12.871 20.640 Atomic orbital electron populations 1.21860 0.98375 0.98982 1.00792 1.22020 0.92667 0.99329 1.03347 1.20728 0.95066 0.88805 0.78587 0.93363 1.21059 0.89709 1.38717 1.06165 0.91298 1.24867 0.99153 0.94841 0.95053 1.69891 1.35285 1.38010 1.09491 0.86291 0.84042 0.78663 0.77247 1.20393 1.21009 1.19654 1.86626 1.33070 1.61944 1.43840 1.19443 0.81084 0.76308 0.84963 1.90782 1.55775 1.58945 1.33736 1.20889 0.94917 1.05359 0.92683 1.74129 1.20638 1.12699 0.99619 1.43100 1.13500 1.39025 1.13423 0.71250 1.21117 0.91763 1.05121 0.94643 1.19859 0.97199 1.02999 0.95115 1.20063 0.89913 1.02629 0.95017 1.21266 0.95571 0.97853 0.96489 0.90970 1.21812 0.97931 1.01477 0.99132 1.21633 0.99085 0.98196 0.95842 1.20193 0.92704 0.97476 0.97952 0.92718 0.94858 0.94942 0.87297 0.93976 0.92460 0.89603 0.90438 0.92488 0.92274 0.92801 0.90959 0.91241 0.90039 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.56 37.16 0.32 -2.93 16 2 C -0.14 -3.50 5.49 -26.73 -0.15 -3.65 16 3 C 0.22 6.11 2.25 -27.88 -0.06 6.05 16 4 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 5 C -0.52 -15.04 8.90 -34.44 -0.31 -15.34 16 6 H 0.07 2.00 7.81 -52.49 -0.41 1.58 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -25.51 11.29 55.43 0.63 -24.89 16 9 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 O -0.34 -8.81 9.82 -40.55 -0.40 -9.21 16 14 C 0.54 12.51 6.42 34.55 0.22 12.73 16 15 O -0.50 -12.07 12.99 -19.26 -0.25 -12.32 16 16 C 0.02 0.38 7.16 -83.00 -0.59 -0.21 16 17 N -0.23 -4.13 12.27 33.27 0.41 -3.72 16 18 N -0.38 -4.65 6.82 33.42 0.23 -4.42 16 19 H 0.44 3.48 8.96 -190.22 -1.71 1.77 16 20 C 0.00 0.00 7.12 -82.45 -0.59 -0.59 16 21 C -0.14 -2.19 5.99 -104.87 -0.63 -2.82 16 22 C -0.04 -0.51 4.84 -27.79 -0.13 -0.65 16 23 C -0.09 -0.89 2.70 -90.32 -0.24 -1.13 16 24 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 25 C -0.15 -1.21 9.16 37.16 0.34 -0.87 16 26 C -0.11 -0.84 5.19 -26.47 -0.14 -0.98 16 27 C -0.04 -0.33 6.31 -27.67 -0.17 -0.51 16 28 H 0.05 1.28 7.79 -51.93 -0.40 0.87 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.72 6.06 -51.93 -0.31 0.41 16 31 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.09 1.30 7.68 -51.93 -0.40 0.90 16 35 H 0.08 1.07 8.12 -51.93 -0.42 0.64 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.07 0.58 8.11 -51.93 -0.42 0.15 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -32.91 338.61 -9.23 -42.14 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.69 Total: 0.00 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.23 Total: -9.24 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 1.26 Total: -33.03 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.65 Total: -21.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.91 -9.23 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344851201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.180 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds