Wall clock time and date at job start Tue Mar 31 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 H 1.08999 * 109.47592 * 305.00542 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00012 * 3 2 1 6 6 H 1.08001 * 120.00125 * 239.99828 * 5 3 2 7 7 C 1.37878 * 119.99897 * 60.00342 * 5 3 2 8 8 N 1.31512 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00060 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47399 * 89.99946 * 9 7 5 11 11 H 1.48498 * 109.47194 * 209.99964 * 9 7 5 12 12 H 1.48503 * 109.47201 * 330.00139 * 9 7 5 13 13 O 1.45207 * 109.47038 * 65.00329 * 3 2 1 14 14 C 1.34721 * 116.99784 * 270.00164 * 13 3 2 15 15 O 1.21486 * 120.00709 * 359.97438 * 14 13 3 16 16 C 1.47592 * 119.99836 * 180.02562 * 14 13 3 17 17 N 1.32253 * 126.68436 * 0.20903 * 16 14 13 18 18 N 1.28837 * 110.14264 * 180.17103 * 17 16 14 19 19 H 0.97001 * 124.97781 * 179.83579 * 18 17 16 20 20 C 1.34329 * 110.04929 * 359.56268 * 18 17 16 21 21 C 1.35567 * 107.23080 * 0.34286 * 20 18 17 22 22 C 1.50378 * 124.62620 * 179.83931 * 21 20 18 23 23 C 1.53473 * 108.28322 * 343.76473 * 22 21 20 24 24 H 1.08998 * 109.46949 * 289.46831 * 23 22 21 25 25 C 1.53004 * 109.45701 * 169.49090 * 23 22 21 26 26 C 1.53105 * 109.50995 * 49.48637 * 23 22 21 27 27 C 1.50718 * 128.89662 * 180.45753 * 20 18 17 28 28 H 1.08997 * 109.47285 * 60.00016 * 1 2 3 29 29 H 1.08998 * 109.46693 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47214 * 299.99487 * 1 2 3 31 31 H 1.09000 * 109.47214 * 240.00512 * 2 1 3 32 32 H 1.09001 * 109.47688 * 120.00272 * 2 1 3 33 33 H 0.96998 * 120.00244 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.70257 * 224.06875 * 22 21 20 35 35 H 1.09000 * 109.73156 * 103.48029 * 22 21 20 36 36 H 1.09005 * 109.47066 * 299.96192 * 25 23 22 37 37 H 1.08996 * 109.47375 * 59.96742 * 25 23 22 38 38 H 1.08999 * 109.47073 * 179.97438 * 25 23 22 39 39 H 1.09004 * 109.44552 * 169.89775 * 26 23 22 40 40 H 1.08998 * 109.41649 * 49.98280 * 26 23 22 41 41 H 1.08999 * 109.69019 * 282.95447 * 27 20 18 42 42 H 1.09001 * 109.69012 * 43.48961 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3377 -2.1734 9 14 6.0048 0.8816 -1.3819 10 1 6.5549 -0.3499 -0.7604 11 1 6.3828 0.9228 -2.8174 12 1 6.5568 2.0741 -0.6902 13 8 1.6558 2.0917 1.2408 14 6 0.4682 2.7276 1.2562 15 8 -0.2272 2.7400 0.2601 16 6 0.0126 3.4104 2.4828 17 7 0.6609 3.4842 3.6332 18 7 -0.0306 4.1533 4.4899 19 1 0.2414 4.3360 5.4029 20 6 -1.1807 4.5659 3.9320 21 6 -1.1929 4.1121 2.6546 22 6 -2.3079 4.3495 1.6740 23 6 -3.5479 4.8043 2.4557 24 1 -3.9446 3.9656 3.0276 25 6 -4.6129 5.3031 1.4769 26 6 -3.1629 5.9369 3.4113 27 6 -2.2905 5.3815 4.5442 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8292 -0.0607 -2.9500 34 1 -2.5293 3.4263 1.1386 35 1 -2.0158 5.1243 0.9651 36 1 -4.2164 6.1421 0.9050 37 1 -4.8871 4.4969 0.7965 38 1 -5.4938 5.6257 2.0318 39 1 -4.0659 6.3792 3.8322 40 1 -2.6065 6.6986 2.8650 41 1 -2.8937 4.7499 5.1964 42 1 -1.8669 6.2047 5.1196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344851201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:08 Heat of formation + Delta-G solvation = -60.155061 kcal Electronic energy + Delta-G solvation = -23879.601526 eV Core-core repulsion = 20438.411135 eV Total energy + Delta-G solvation = -3441.190391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.94019 -41.11926 -38.47731 -37.60821 -35.51483 -33.85693 -33.29768 -32.54082 -30.68230 -29.35055 -27.48325 -26.10895 -24.85602 -24.25500 -22.48566 -21.95100 -21.05722 -20.07159 -18.86811 -18.77075 -18.19295 -17.39852 -17.23169 -16.48127 -16.35791 -15.70176 -15.16077 -14.91730 -14.82044 -14.51390 -14.17580 -14.05589 -13.90162 -13.46436 -13.39439 -13.33061 -13.14862 -12.95661 -12.83358 -12.56562 -12.45445 -12.15826 -11.87779 -11.80166 -11.72622 -11.65479 -11.43082 -11.40503 -11.17074 -10.85065 -10.55352 -10.43969 -9.69285 -8.28491 -6.45375 0.30160 1.01393 1.39647 1.42499 1.52924 1.69042 2.12430 2.18052 2.42957 3.00488 3.39634 3.56901 3.82929 3.96462 4.11099 4.22590 4.29374 4.35413 4.37145 4.48287 4.54750 4.62178 4.72614 4.80785 4.83055 4.91513 5.00129 5.04488 5.05480 5.09671 5.19489 5.20581 5.29250 5.34586 5.44839 5.47025 5.50482 5.58753 5.64141 5.90889 6.07782 6.11180 6.56847 6.72542 7.01164 7.25808 8.78677 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.003904 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.302914 B = 7169.792276 C = 7738.456282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.269 1.269 13 O -0.356 6.356 14 C 0.534 3.466 15 O -0.524 6.524 16 C -0.022 4.022 17 N -0.264 5.264 18 N -0.349 5.349 19 H 0.465 0.535 20 C 0.033 3.967 21 C -0.165 4.165 22 C -0.038 4.038 23 C -0.087 4.087 24 H 0.077 0.923 25 C -0.145 4.145 26 C -0.108 4.108 27 C -0.042 4.042 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.272 0.728 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.248 11.417 15.548 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.805 3.195 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.194 1.194 13 O -0.271 6.271 14 C 0.377 3.623 15 O -0.413 6.413 16 C -0.177 4.177 17 N -0.102 5.102 18 N -0.066 5.066 19 H 0.314 0.686 20 C -0.095 4.095 21 C -0.175 4.175 22 C -0.077 4.077 23 C -0.106 4.106 24 H 0.095 0.905 25 C -0.202 4.202 26 C -0.146 4.146 27 C -0.080 4.080 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.406 10.932 15.502 23.819 hybrid contribution 0.755 -0.186 -0.757 1.085 sum -13.651 10.746 14.745 22.787 Atomic orbital electron populations 1.21699 0.96208 1.00678 0.99989 1.21866 0.94550 0.97911 1.02304 1.20472 0.94701 0.89405 0.78309 0.97156 1.21297 0.90427 1.40309 1.07016 0.92162 1.25786 1.04350 0.93709 0.94141 1.70000 1.37439 1.37730 1.09802 0.85201 0.77525 0.79042 0.77736 1.19086 1.19826 1.19361 1.86609 1.34947 1.62782 1.42772 1.20109 0.79914 0.75803 0.86452 1.90745 1.55906 1.59673 1.34980 1.20609 0.97198 1.07823 0.92066 1.74002 1.21913 1.14432 0.99903 1.43185 1.12985 1.36772 1.13686 0.68595 1.21803 0.91771 1.02871 0.93068 1.20174 0.96495 1.03526 0.97268 1.20071 0.91621 1.00918 0.95066 1.21249 0.93605 0.98984 0.96741 0.90503 1.21806 0.98432 1.00958 0.98999 1.21674 1.00496 0.97044 0.95357 1.20515 0.91116 0.98188 0.98192 0.94066 0.91740 0.95164 0.89066 0.93960 0.91876 0.92606 0.91762 0.92700 0.93491 0.90336 0.87560 0.91894 0.87258 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.56 71.98 0.62 -5.45 16 2 C -0.13 -6.92 5.49 30.59 0.17 -6.75 16 3 C 0.22 13.18 2.25 29.85 0.07 13.25 16 4 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 5 C -0.55 -33.49 8.90 25.60 0.23 -33.26 16 6 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -53.71 11.29 21.45 0.24 -53.47 16 9 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 O -0.36 -19.62 9.82 -56.31 -0.55 -20.18 16 14 C 0.53 26.41 6.42 70.29 0.45 26.86 16 15 O -0.52 -27.09 12.99 19.88 0.26 -26.84 16 16 C -0.02 -0.87 7.16 42.11 0.30 -0.56 16 17 N -0.26 -9.34 12.27 -48.66 -0.60 -9.94 16 18 N -0.35 -7.87 6.82 -48.17 -0.33 -8.20 16 19 H 0.47 5.78 8.96 -219.80 -1.97 3.81 16 20 C 0.03 0.70 7.12 41.56 0.30 0.99 16 21 C -0.16 -5.10 5.99 -20.02 -0.12 -5.22 16 22 C -0.04 -1.07 4.84 29.91 0.14 -0.93 16 23 C -0.09 -1.49 2.70 -10.60 -0.03 -1.52 16 24 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 25 C -0.14 -2.14 9.16 71.98 0.66 -1.49 16 26 C -0.11 -1.21 5.19 30.76 0.16 -1.05 16 27 C -0.04 -0.41 6.31 29.99 0.19 -0.22 16 28 H 0.04 2.02 7.79 -2.39 -0.02 2.00 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.03 1.40 6.06 -2.39 -0.01 1.39 16 31 H 0.09 5.24 5.95 -2.39 -0.01 5.23 16 32 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.06 1.84 7.68 -2.39 -0.02 1.82 16 35 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 36 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 0.59 8.11 -2.39 -0.02 0.57 16 40 H 0.06 0.83 8.11 -2.39 -0.02 0.81 16 41 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -77.29 338.61 3.69 -73.60 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -0.94 Total: 12.06 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.58 Total: -13.74 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.68 Total: -71.60 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.29 Total: -47.01 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -77.29 3.69 -73.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344851201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.449 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds