Wall clock time and date at job start Tue Mar 31 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47194 * 2 1 4 4 H 1.08996 * 109.47155 * 55.00174 * 3 2 1 5 5 C 1.50702 * 109.47141 * 175.00036 * 3 2 1 6 6 H 1.08003 * 119.99514 * 119.99667 * 5 3 2 7 7 C 1.37873 * 119.99964 * 300.00177 * 5 3 2 8 8 N 1.31514 * 120.00286 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99807 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46992 * 90.00031 * 9 7 5 11 11 H 1.48501 * 109.46927 * 209.99733 * 9 7 5 12 12 H 1.48494 * 109.47244 * 329.99814 * 9 7 5 13 13 O 1.45207 * 109.46882 * 295.00023 * 3 2 1 14 14 C 1.34721 * 116.99778 * 90.00289 * 13 3 2 15 15 O 1.21492 * 120.00135 * 359.97438 * 14 13 3 16 16 C 1.47591 * 119.99831 * 180.02562 * 14 13 3 17 17 N 1.32253 * 126.68432 * 0.25500 * 16 14 13 18 18 N 1.28837 * 110.14264 * 180.13230 * 17 16 14 19 19 H 0.97001 * 124.97781 * 179.83579 * 18 17 16 20 20 C 1.34329 * 110.04929 * 359.56268 * 18 17 16 21 21 C 1.35567 * 107.23080 * 0.34286 * 20 18 17 22 22 C 1.50378 * 124.62620 * 179.83931 * 21 20 18 23 23 C 1.53473 * 108.28322 * 343.76473 * 22 21 20 24 24 H 1.08998 * 109.46949 * 289.46831 * 23 22 21 25 25 C 1.53004 * 109.45701 * 169.49090 * 23 22 21 26 26 C 1.53105 * 109.50995 * 49.48637 * 23 22 21 27 27 C 1.50718 * 128.89662 * 180.45753 * 20 18 17 28 28 H 1.09005 * 109.46768 * 59.99990 * 1 2 3 29 29 H 1.08998 * 109.46820 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46640 * 300.00330 * 1 2 3 31 31 H 1.09003 * 109.47401 * 240.00045 * 2 1 3 32 32 H 1.08997 * 109.47324 * 119.99691 * 2 1 3 33 33 H 0.96991 * 120.00073 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.70257 * 224.06875 * 22 21 20 35 35 H 1.09000 * 109.73156 * 103.48029 * 22 21 20 36 36 H 1.09005 * 109.47066 * 299.96192 * 25 23 22 37 37 H 1.08996 * 109.47375 * 59.96742 * 25 23 22 38 38 H 1.08999 * 109.47073 * 179.97438 * 25 23 22 39 39 H 1.09004 * 109.44552 * 169.89775 * 26 23 22 40 40 H 1.08998 * 109.41649 * 49.98280 * 26 23 22 41 41 H 1.08999 * 109.69019 * 282.95447 * 27 20 18 42 42 H 1.09001 * 109.69012 * 43.48961 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3374 2.1733 9 14 6.0050 0.8813 1.3817 10 1 6.4416 2.1142 2.0849 11 1 6.4396 -0.3098 2.1548 12 1 6.6136 0.8417 0.0278 13 8 1.6559 2.0917 -1.2408 14 6 0.4684 2.7278 -1.2560 15 8 -0.2273 2.7394 -0.2601 16 6 0.0122 3.4096 -2.4830 17 7 0.6560 3.4751 -3.6363 18 7 -0.0316 4.1515 -4.4905 19 1 0.2404 4.3343 -5.4034 20 6 -1.1831 4.5616 -3.9334 21 6 -1.1933 4.1113 -2.6547 22 6 -2.3059 4.3533 -1.6724 23 6 -3.1815 5.4941 -2.2082 24 1 -2.6337 6.4341 -2.1427 25 6 -4.4603 5.5902 -1.3736 26 6 -3.5455 5.2164 -3.6692 27 6 -2.2980 5.3674 -4.5490 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0604 2.9502 34 1 -1.8879 4.6339 -0.7056 35 1 -2.9053 3.4492 -1.5652 36 1 -5.0085 4.6503 -1.4393 37 1 -4.2014 5.7879 -0.3335 38 1 -5.0822 6.4007 -1.7537 39 1 -4.3069 5.9254 -3.9946 40 1 -3.9326 4.2015 -3.7596 41 1 -2.0084 6.4171 -4.5987 42 1 -2.5084 4.9968 -5.5523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344851218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:18 Heat of formation + Delta-G solvation = -39.957767 kcal Electronic energy + Delta-G solvation = -23876.792397 eV Core-core repulsion = 20436.477827 eV Total energy + Delta-G solvation = -3440.314570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.75972 -39.21182 -37.64260 -35.65614 -33.42220 -32.69284 -31.61308 -31.24906 -29.66323 -27.26922 -26.52574 -24.42027 -23.50454 -22.89070 -21.36087 -20.25795 -19.31197 -19.01877 -17.69804 -16.86867 -16.44478 -15.86622 -15.33145 -15.04785 -14.70733 -14.42067 -14.36249 -13.75973 -13.34052 -13.15734 -12.92304 -12.74323 -12.53871 -12.22474 -12.00384 -11.78419 -11.39618 -11.26856 -11.12112 -11.04597 -10.89230 -10.79309 -10.66340 -10.59727 -10.43198 -10.21344 -9.74655 -9.61726 -9.29573 -9.20412 -8.71808 -8.58690 -8.38379 -6.11838 -4.17935 1.77190 2.13707 2.84016 3.29469 3.34628 3.39294 3.72318 3.79601 4.35825 4.43174 4.53651 4.61446 4.82835 4.97236 5.08669 5.20127 5.20992 5.34853 5.40965 5.57569 5.68007 5.70932 5.78414 5.84078 5.90145 6.05799 6.11737 6.30862 6.32130 6.32951 6.38617 6.50258 6.60076 6.96056 7.02103 7.06229 7.24933 7.31774 7.68676 7.81247 7.92165 8.03944 8.23422 8.73376 8.98730 9.46758 10.95121 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.003893 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.904269 B = 7190.768773 C = 7713.986100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.340 6.340 14 C 0.540 3.460 15 O -0.505 6.505 16 C 0.020 3.980 17 N -0.234 5.234 18 N -0.377 5.377 19 H 0.443 0.557 20 C 0.000 4.000 21 C -0.142 4.142 22 C -0.038 4.038 23 C -0.093 4.093 24 H 0.072 0.928 25 C -0.146 4.146 26 C -0.109 4.109 27 C -0.044 4.044 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 10.114 -12.935 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.255 6.255 14 C 0.382 3.618 15 O -0.392 6.392 16 C -0.138 4.138 17 N -0.071 5.071 18 N -0.090 5.090 19 H 0.288 0.712 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.076 4.076 23 C -0.112 4.112 24 H 0.091 0.909 25 C -0.203 4.203 26 C -0.147 4.147 27 C -0.083 4.083 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.350 9.610 -12.875 20.889 hybrid contribution 0.511 0.180 0.016 0.542 sum -12.839 9.790 -12.859 20.640 Atomic orbital electron populations 1.21860 0.98368 0.98975 1.00799 1.22019 0.92668 0.99324 1.03345 1.20727 0.95065 0.88813 0.78583 0.93375 1.21059 0.89710 1.38698 1.06182 0.91299 1.24866 0.99152 0.94809 0.95081 1.69890 1.35299 1.38044 1.09447 0.86293 0.84036 0.77618 0.78315 1.20445 1.20984 1.19611 1.86627 1.33109 1.61912 1.43830 1.19445 0.81079 0.76306 0.84973 1.90784 1.55836 1.58815 1.33804 1.20888 0.94969 1.05431 0.92557 1.74129 1.20895 1.12390 0.99672 1.43100 1.13614 1.38735 1.13600 0.71249 1.21117 0.91591 1.05404 0.94530 1.19860 0.97115 1.03243 0.94958 1.20062 0.92621 0.98123 0.96806 1.21268 0.96485 0.99095 0.94351 0.90942 1.21812 0.96761 1.01658 1.00115 1.21632 0.95959 1.02612 0.94534 1.20193 0.91124 0.98370 0.98644 0.94938 0.94862 0.92720 0.93973 0.87298 0.92460 0.89578 0.90473 0.92508 0.92262 0.92798 0.90959 0.91266 0.90022 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.56 37.16 0.32 -2.94 16 2 C -0.14 -3.50 5.49 -26.73 -0.15 -3.65 16 3 C 0.22 6.11 2.25 -27.88 -0.06 6.05 16 4 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 5 C -0.52 -15.03 8.90 -34.44 -0.31 -15.34 16 6 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -25.52 11.29 55.43 0.63 -24.89 16 9 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.34 -8.81 9.82 -40.55 -0.40 -9.21 16 14 C 0.54 12.51 6.42 34.55 0.22 12.73 16 15 O -0.50 -12.07 12.99 -19.26 -0.25 -12.32 16 16 C 0.02 0.38 7.16 -83.00 -0.59 -0.21 16 17 N -0.23 -4.13 12.27 33.27 0.41 -3.72 16 18 N -0.38 -4.65 6.82 33.42 0.23 -4.42 16 19 H 0.44 3.48 8.96 -190.22 -1.71 1.77 16 20 C 0.00 0.00 7.12 -82.45 -0.59 -0.59 16 21 C -0.14 -2.19 5.99 -104.87 -0.63 -2.82 16 22 C -0.04 -0.51 4.84 -27.79 -0.13 -0.65 16 23 C -0.09 -0.89 2.70 -90.32 -0.24 -1.14 16 24 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 25 C -0.15 -1.21 9.16 37.16 0.34 -0.87 16 26 C -0.11 -0.84 5.19 -26.47 -0.14 -0.98 16 27 C -0.04 -0.33 6.31 -27.67 -0.17 -0.51 16 28 H 0.03 0.73 6.06 -51.93 -0.31 0.41 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 1.28 7.79 -51.93 -0.40 0.88 16 31 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.09 1.31 7.68 -51.93 -0.40 0.92 16 35 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -32.91 338.61 -9.23 -42.14 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.69 Total: 0.01 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.23 Total: -9.24 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 1.26 Total: -33.03 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.65 Total: -21.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.91 -9.23 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344851218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.182 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds