Wall clock time and date at job start Tue Mar 31 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47194 * 2 1 4 4 H 1.08996 * 109.47155 * 55.00174 * 3 2 1 5 5 C 1.50702 * 109.47141 * 175.00036 * 3 2 1 6 6 H 1.08003 * 119.99514 * 119.99667 * 5 3 2 7 7 C 1.37873 * 119.99964 * 300.00177 * 5 3 2 8 8 N 1.31514 * 120.00286 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99807 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46992 * 90.00031 * 9 7 5 11 11 H 1.48501 * 109.46927 * 209.99733 * 9 7 5 12 12 H 1.48494 * 109.47244 * 329.99814 * 9 7 5 13 13 O 1.45207 * 109.46882 * 295.00023 * 3 2 1 14 14 C 1.34721 * 116.99778 * 90.00289 * 13 3 2 15 15 O 1.21492 * 120.00135 * 359.97438 * 14 13 3 16 16 C 1.47591 * 119.99831 * 180.02562 * 14 13 3 17 17 N 1.32253 * 126.68432 * 0.25500 * 16 14 13 18 18 N 1.28837 * 110.14264 * 180.13230 * 17 16 14 19 19 H 0.97001 * 124.97781 * 179.83579 * 18 17 16 20 20 C 1.34329 * 110.04929 * 359.56268 * 18 17 16 21 21 C 1.35567 * 107.23080 * 0.34286 * 20 18 17 22 22 C 1.50378 * 124.62620 * 179.83931 * 21 20 18 23 23 C 1.53473 * 108.28322 * 343.76473 * 22 21 20 24 24 H 1.08998 * 109.46949 * 289.46831 * 23 22 21 25 25 C 1.53004 * 109.45701 * 169.49090 * 23 22 21 26 26 C 1.53105 * 109.50995 * 49.48637 * 23 22 21 27 27 C 1.50718 * 128.89662 * 180.45753 * 20 18 17 28 28 H 1.09005 * 109.46768 * 59.99990 * 1 2 3 29 29 H 1.08998 * 109.46820 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46640 * 300.00330 * 1 2 3 31 31 H 1.09003 * 109.47401 * 240.00045 * 2 1 3 32 32 H 1.08997 * 109.47324 * 119.99691 * 2 1 3 33 33 H 0.96991 * 120.00073 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.70257 * 224.06875 * 22 21 20 35 35 H 1.09000 * 109.73156 * 103.48029 * 22 21 20 36 36 H 1.09005 * 109.47066 * 299.96192 * 25 23 22 37 37 H 1.08996 * 109.47375 * 59.96742 * 25 23 22 38 38 H 1.08999 * 109.47073 * 179.97438 * 25 23 22 39 39 H 1.09004 * 109.44552 * 169.89775 * 26 23 22 40 40 H 1.08998 * 109.41649 * 49.98280 * 26 23 22 41 41 H 1.08999 * 109.69019 * 282.95447 * 27 20 18 42 42 H 1.09001 * 109.69012 * 43.48961 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3374 2.1733 9 14 6.0050 0.8813 1.3817 10 1 6.4416 2.1142 2.0849 11 1 6.4396 -0.3098 2.1548 12 1 6.6136 0.8417 0.0278 13 8 1.6559 2.0917 -1.2408 14 6 0.4684 2.7278 -1.2560 15 8 -0.2273 2.7394 -0.2601 16 6 0.0122 3.4096 -2.4830 17 7 0.6560 3.4751 -3.6363 18 7 -0.0316 4.1515 -4.4905 19 1 0.2404 4.3343 -5.4034 20 6 -1.1831 4.5616 -3.9334 21 6 -1.1933 4.1113 -2.6547 22 6 -2.3059 4.3533 -1.6724 23 6 -3.1815 5.4941 -2.2082 24 1 -2.6337 6.4341 -2.1427 25 6 -4.4603 5.5902 -1.3736 26 6 -3.5455 5.2164 -3.6692 27 6 -2.2980 5.3674 -4.5490 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0604 2.9502 34 1 -1.8879 4.6339 -0.7056 35 1 -2.9053 3.4492 -1.5652 36 1 -5.0085 4.6503 -1.4393 37 1 -4.2014 5.7879 -0.3335 38 1 -5.0822 6.4007 -1.7537 39 1 -4.3069 5.9254 -3.9946 40 1 -3.9326 4.2015 -3.7596 41 1 -2.0084 6.4171 -4.5987 42 1 -2.5084 4.9968 -5.5523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344851218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:17 Heat of formation + Delta-G solvation = -60.149890 kcal Electronic energy + Delta-G solvation = -23877.667994 eV Core-core repulsion = 20436.477827 eV Total energy + Delta-G solvation = -3441.190167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.94019 -41.11867 -38.47763 -37.60723 -35.51445 -33.85731 -33.29607 -32.54139 -30.68271 -29.34977 -27.48332 -26.10869 -24.85615 -24.25487 -22.48625 -21.95041 -21.05707 -20.06926 -18.85688 -18.77168 -18.23727 -17.32101 -17.24868 -16.51551 -16.36433 -15.69103 -15.16447 -14.91381 -14.82761 -14.49023 -14.15549 -14.09037 -13.90313 -13.46106 -13.40105 -13.33042 -13.13726 -12.96689 -12.81701 -12.58695 -12.45398 -12.14835 -11.87421 -11.79793 -11.71494 -11.66141 -11.43197 -11.41567 -11.17443 -10.83880 -10.56074 -10.43788 -9.69258 -8.28478 -6.45370 0.30147 1.01401 1.39618 1.42273 1.53330 1.68992 2.12498 2.17960 2.43020 3.00543 3.39630 3.56895 3.82920 3.96472 4.11116 4.22570 4.29301 4.35499 4.37230 4.48180 4.54942 4.62112 4.72652 4.80926 4.82820 4.91580 5.00095 5.04529 5.05478 5.09676 5.19574 5.20621 5.29281 5.34676 5.44853 5.47063 5.50438 5.58635 5.64148 5.90928 6.07813 6.11185 6.56864 6.72549 7.01171 7.25830 8.78717 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.003893 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.904269 B = 7190.768773 C = 7713.986100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.982 3.018 10 H -0.271 1.271 11 H -0.271 1.271 12 H -0.266 1.266 13 O -0.356 6.356 14 C 0.534 3.466 15 O -0.524 6.524 16 C -0.021 4.021 17 N -0.264 5.264 18 N -0.349 5.349 19 H 0.465 0.535 20 C 0.033 3.967 21 C -0.165 4.165 22 C -0.038 4.038 23 C -0.088 4.088 24 H 0.075 0.925 25 C -0.144 4.144 26 C -0.107 4.107 27 C -0.042 4.042 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.272 0.728 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.231 11.480 -15.529 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.805 3.195 10 H -0.196 1.196 11 H -0.196 1.196 12 H -0.191 1.191 13 O -0.271 6.271 14 C 0.377 3.623 15 O -0.413 6.413 16 C -0.177 4.177 17 N -0.102 5.102 18 N -0.066 5.066 19 H 0.314 0.686 20 C -0.095 4.095 21 C -0.175 4.175 22 C -0.076 4.076 23 C -0.106 4.106 24 H 0.093 0.907 25 C -0.202 4.202 26 C -0.145 4.145 27 C -0.080 4.080 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.126 0.874 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.392 10.980 -15.489 23.825 hybrid contribution 0.754 -0.175 0.765 1.089 sum -13.638 10.804 -14.724 22.793 Atomic orbital electron populations 1.21700 0.96204 1.00674 0.99992 1.21864 0.94551 0.97908 1.02301 1.20472 0.94702 0.89411 0.78307 0.97166 1.21298 0.90428 1.40289 1.07029 0.92154 1.25786 1.04351 0.93681 0.94169 1.70000 1.37455 1.37766 1.09757 0.85202 0.77517 0.78210 0.78592 1.19648 1.19556 1.19058 1.86609 1.34990 1.62750 1.42759 1.20111 0.79912 0.75800 0.86459 1.90747 1.55976 1.59536 1.35044 1.20607 0.97303 1.07853 0.91929 1.74002 1.22189 1.14118 0.99939 1.43185 1.13109 1.36472 1.13863 0.68595 1.21802 0.91627 1.03083 0.92998 1.20175 0.96429 1.03749 0.97114 1.20068 0.92713 0.99454 0.95409 1.21253 0.96099 0.97122 0.96176 0.90674 1.21804 0.96458 1.02558 0.99355 1.21670 0.96816 1.03393 0.92626 1.20516 0.88762 0.98990 0.99762 0.95161 0.91738 0.94068 0.93957 0.89069 0.91875 0.92811 0.91523 0.92566 0.93573 0.90362 0.87583 0.91747 0.87374 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.56 71.98 0.62 -5.45 16 2 C -0.13 -6.92 5.49 30.60 0.17 -6.75 16 3 C 0.22 13.18 2.25 29.85 0.07 13.25 16 4 H 0.01 0.68 7.16 -2.39 -0.02 0.67 16 5 C -0.55 -33.48 8.90 25.60 0.23 -33.25 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -53.71 11.29 21.45 0.24 -53.47 16 9 Si 0.98 44.66 29.54 68.60 2.03 46.68 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 O -0.36 -19.62 9.82 -56.31 -0.55 -20.18 16 14 C 0.53 26.40 6.42 70.29 0.45 26.85 16 15 O -0.52 -27.09 12.99 19.86 0.26 -26.84 16 16 C -0.02 -0.86 7.16 42.11 0.30 -0.56 16 17 N -0.26 -9.34 12.27 -48.66 -0.60 -9.93 16 18 N -0.35 -7.87 6.82 -48.17 -0.33 -8.20 16 19 H 0.47 5.78 8.96 -219.80 -1.97 3.81 16 20 C 0.03 0.70 7.12 41.56 0.30 1.00 16 21 C -0.16 -5.10 5.99 -20.02 -0.12 -5.22 16 22 C -0.04 -1.06 4.84 29.91 0.14 -0.92 16 23 C -0.09 -1.52 2.70 -10.60 -0.03 -1.55 16 24 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 25 C -0.14 -2.15 9.16 71.98 0.66 -1.49 16 26 C -0.11 -1.19 5.19 30.76 0.16 -1.03 16 27 C -0.04 -0.41 6.31 29.99 0.19 -0.22 16 28 H 0.03 1.41 6.06 -2.38 -0.01 1.39 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.04 2.02 7.79 -2.39 -0.02 2.00 16 31 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 5.24 5.95 -2.39 -0.01 5.23 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.05 1.79 7.68 -2.39 -0.02 1.78 16 35 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 0.58 8.11 -2.39 -0.02 0.56 16 40 H 0.06 0.82 8.11 -2.39 -0.02 0.80 16 41 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -77.30 338.61 3.69 -73.61 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -0.94 Total: 12.05 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.58 Total: -13.74 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -0.68 Total: -71.60 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.29 Total: -47.01 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -77.30 3.69 -73.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344851218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.461 kcal (2) G-P(sol) polarization free energy of solvation -77.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds