Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28440 * 125.20546 * 2 1 4 4 C 1.31085 * 110.98928 * 179.97438 * 3 2 1 5 5 C 1.39497 * 107.61009 * 0.02562 * 4 3 2 6 6 C 1.36717 * 125.20207 * 179.97438 * 2 1 3 7 7 C 1.47013 * 126.95128 * 359.96677 * 6 2 1 8 8 O 1.21546 * 119.99921 * 180.02562 * 7 6 2 9 9 O 1.34813 * 119.99424 * 0.02562 * 7 6 2 10 10 C 1.45207 * 116.99664 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47281 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47404 * 300.00337 * 11 10 9 13 13 C 1.53009 * 109.46756 * 60.00401 * 11 10 9 14 14 C 1.50705 * 109.47110 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00027 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00065 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99724 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00064 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47263 * 89.99706 * 18 16 14 20 20 H 1.48500 * 109.46956 * 209.99946 * 18 16 14 21 21 H 1.48504 * 109.46906 * 329.99556 * 18 16 14 22 22 C 1.50853 * 109.88643 * 179.97438 * 5 4 3 23 23 C 1.54427 * 105.16796 * 342.94985 * 22 5 4 24 24 C 1.51277 * 143.00772 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.46885 * 270.00143 * 1 2 3 26 26 H 1.09001 * 109.47138 * 30.00310 * 1 2 3 27 27 H 1.09002 * 109.46805 * 150.00550 * 1 2 3 28 28 H 1.09000 * 109.47239 * 300.00563 * 10 9 7 29 29 H 1.09008 * 109.46905 * 60.00248 * 10 9 7 30 30 H 1.09001 * 109.47067 * 60.00251 * 12 11 10 31 31 H 1.09000 * 109.47053 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.46904 * 299.99669 * 12 11 10 33 33 H 1.09000 * 109.47068 * 59.99807 * 13 11 10 34 34 H 1.09001 * 109.46514 * 179.97438 * 13 11 10 35 35 H 1.08999 * 109.46899 * 300.00076 * 13 11 10 36 36 H 0.97002 * 120.00097 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.30474 * 224.03103 * 22 5 4 38 38 H 1.08994 * 110.39102 * 101.91469 * 22 5 4 39 39 H 1.08999 * 110.78559 * 144.53092 * 23 22 5 40 40 H 1.08999 * 110.78275 * 267.97768 * 23 22 5 41 41 H 1.09006 * 110.28108 * 78.18064 * 24 4 3 42 42 H 1.08997 * 110.28597 * 316.08235 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2055 1.0495 0.0000 4 6 3.4762 0.7275 0.0005 5 6 3.5588 -0.6650 0.0003 6 6 2.2531 -1.1171 0.0005 7 6 1.8026 -2.5165 0.0018 8 8 2.6183 -3.4176 0.0026 9 8 0.4846 -2.8002 0.0021 10 6 0.1125 -4.2038 0.0029 11 6 -1.4125 -4.3271 0.0038 12 6 -1.9783 -3.6489 1.2530 13 6 -1.9796 -3.6498 -1.2455 14 6 -1.7986 -5.7839 0.0039 15 1 -1.0329 -6.5455 0.0038 16 6 -3.1295 -6.1443 0.0042 17 7 -4.0619 -5.2167 0.0038 18 14 -3.6081 -7.9499 0.0050 19 1 -3.7348 -8.4277 1.4052 20 1 -4.9070 -8.1180 -0.6948 21 1 -2.5630 -8.7393 -0.6948 22 6 5.0052 -1.0932 0.0003 23 6 5.7972 0.1585 -0.4365 24 6 4.8710 1.3132 0.0013 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 0.5160 -4.6872 -0.8869 29 1 0.5162 -4.6862 0.8931 30 1 -1.6990 -2.5952 1.2524 31 1 -3.0648 -3.7364 1.2534 32 1 -1.5743 -4.1314 2.1429 33 1 -1.5765 -4.1331 -2.1355 34 1 -3.0660 -3.7381 -1.2451 35 1 -1.7002 -2.5963 -1.2461 36 1 -4.9982 -5.4703 0.0043 37 1 5.1593 -1.9052 -0.7103 38 1 5.3095 -1.4034 0.9999 39 1 6.7539 0.2117 0.0831 40 1 5.9415 0.1673 -1.5168 41 1 5.1378 1.6524 1.0023 42 1 4.9347 2.1386 -0.7076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525292506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -10.501045 kcal Electronic energy + Delta-G solvation = -23891.932030 eV Core-core repulsion = 20452.894799 eV Total energy + Delta-G solvation = -3439.037231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.73392 -39.73700 -37.11912 -36.61262 -34.92435 -32.25690 -31.37031 -30.81740 -27.76574 -26.52606 -25.91737 -25.72585 -25.18840 -23.18056 -21.60835 -20.32831 -19.60533 -18.92454 -17.42746 -16.67230 -16.17082 -15.93995 -15.66483 -15.46313 -15.05887 -14.77329 -13.95513 -13.62722 -13.14203 -13.04580 -12.97636 -12.70793 -12.68160 -12.51442 -11.99536 -11.77029 -11.57123 -11.31787 -11.28346 -11.13737 -11.03355 -10.77267 -10.57139 -10.51711 -10.31367 -10.19242 -10.01658 -9.52156 -9.42219 -9.09138 -8.85206 -8.61408 -8.44342 -6.08965 -4.20499 1.16665 2.37645 2.46331 3.02172 3.13422 3.24052 3.31263 3.35414 3.77964 4.33109 4.60798 4.71498 4.87491 4.95539 5.13714 5.18000 5.20142 5.28103 5.47398 5.59879 5.64861 5.70344 5.79776 5.84111 5.95989 6.01297 6.01518 6.06101 6.36074 6.41417 6.61126 6.76929 6.87607 6.88682 7.00585 7.03088 7.30047 7.52389 7.63304 7.92662 7.96117 8.07165 8.14375 8.30856 8.79227 9.45531 10.92369 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.003605 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.174579 B = 7764.150817 C = 8366.647063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.260 5.260 3 N -0.253 5.253 4 C -0.010 4.010 5 C -0.149 4.149 6 C -0.004 4.004 7 C 0.531 3.469 8 O -0.498 6.498 9 O -0.349 6.349 10 C 0.084 3.916 11 C 0.071 3.929 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.513 4.513 15 H 0.058 0.942 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.045 4.045 23 C -0.116 4.116 24 C -0.024 4.024 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.014 0.986 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.013 0.987 36 H 0.261 0.739 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.967 12.161 -0.207 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.050 5.050 3 N -0.087 5.087 4 C -0.167 4.167 5 C -0.160 4.160 6 C -0.128 4.128 7 C 0.373 3.627 8 O -0.385 6.385 9 O -0.265 6.265 10 C 0.012 3.988 11 C 0.070 3.930 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.551 4.551 15 H 0.076 0.924 16 C -0.133 4.133 17 N -0.520 5.520 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.083 4.083 23 C -0.154 4.154 24 C -0.063 4.063 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.035 12.727 -0.212 17.518 hybrid contribution -0.025 -1.848 0.066 1.849 sum 12.010 10.879 -0.146 16.206 Atomic orbital electron populations 1.22492 0.71377 1.06368 1.05310 1.45922 1.07970 1.01174 1.49927 1.72667 1.02923 1.13353 1.19753 1.22752 0.92779 0.94149 1.06978 1.21125 0.93808 0.95365 1.05686 1.19817 0.90372 0.86571 1.16072 1.19685 0.82321 0.86862 0.73800 1.90843 1.55144 1.46545 1.46016 1.86581 1.23105 1.34031 1.82825 1.23783 0.99731 0.74314 1.00970 1.18260 0.84937 0.96021 0.93732 1.21780 1.04413 0.95589 0.96919 1.21792 1.04479 0.95461 0.96952 1.20921 0.92155 0.90228 1.51807 0.92423 1.24847 0.96297 0.97568 0.94565 1.69815 1.00255 1.32001 1.49967 0.86527 0.77954 0.84961 0.78193 1.20604 1.21128 1.19856 1.20405 0.87176 0.98159 1.02558 1.22411 0.97948 0.93241 1.01831 1.20393 0.85314 0.98023 1.02549 0.89271 0.88585 0.86521 0.92215 0.92218 0.96673 0.89631 0.95732 0.95697 0.89577 0.96778 0.92843 0.90194 0.89949 0.89789 0.90609 0.89760 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.81 59.85 0.65 1.71 16 2 N -0.26 -4.00 3.75 -63.96 -0.24 -4.24 16 3 N -0.25 -3.85 11.91 33.78 0.40 -3.45 16 4 C -0.01 -0.13 8.13 -82.16 -0.67 -0.80 16 5 C -0.15 -2.23 6.83 -104.10 -0.71 -2.94 16 6 C 0.00 -0.07 6.96 -82.16 -0.57 -0.64 16 7 C 0.53 10.01 7.93 34.29 0.27 10.28 16 8 O -0.50 -10.31 16.71 -19.30 -0.32 -10.64 16 9 O -0.35 -6.72 6.36 -40.80 -0.26 -6.98 16 10 C 0.08 1.81 4.27 37.16 0.16 1.97 16 11 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16 12 C -0.13 -2.95 8.11 37.16 0.30 -2.65 16 13 C -0.13 -2.94 8.11 37.16 0.30 -2.64 16 14 C -0.51 -13.31 8.01 -34.44 -0.28 -13.59 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 17 N -0.88 -23.25 9.35 55.43 0.52 -22.73 16 18 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.04 -0.51 6.76 -27.06 -0.18 -0.70 16 23 C -0.12 -0.94 7.07 -25.27 -0.18 -1.11 16 24 C -0.02 -0.22 6.76 -26.88 -0.18 -0.40 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.12 1.62 5.74 -51.93 -0.30 1.32 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 30 H 0.01 0.30 7.68 -51.93 -0.40 -0.10 16 31 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 2.14 6.07 -51.93 -0.31 1.82 16 35 H 0.01 0.27 7.26 -51.93 -0.38 -0.10 16 36 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -29.34 340.97 -7.37 -36.72 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.32 Total: -0.98 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.27 Total: -8.25 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.68 Total: -30.42 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.58 Total: -17.62 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.34 -7.37 -36.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525292506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.215 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds