Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28440 * 125.20546 * 2 1 4 4 C 1.31085 * 110.98928 * 179.97438 * 3 2 1 5 5 C 1.39497 * 107.61009 * 0.02562 * 4 3 2 6 6 C 1.36717 * 125.20207 * 179.97438 * 2 1 3 7 7 C 1.47013 * 126.95128 * 359.96677 * 6 2 1 8 8 O 1.21546 * 119.99921 * 180.02562 * 7 6 2 9 9 O 1.34813 * 119.99424 * 0.02562 * 7 6 2 10 10 C 1.45207 * 116.99664 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47281 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47404 * 300.00337 * 11 10 9 13 13 C 1.53009 * 109.46756 * 60.00401 * 11 10 9 14 14 C 1.50705 * 109.47110 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00027 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00065 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99724 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00064 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47263 * 89.99706 * 18 16 14 20 20 H 1.48500 * 109.46956 * 209.99946 * 18 16 14 21 21 H 1.48504 * 109.46906 * 329.99556 * 18 16 14 22 22 C 1.50853 * 109.88643 * 179.97438 * 5 4 3 23 23 C 1.54427 * 105.16796 * 342.94985 * 22 5 4 24 24 C 1.51277 * 143.00772 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.46885 * 270.00143 * 1 2 3 26 26 H 1.09001 * 109.47138 * 30.00310 * 1 2 3 27 27 H 1.09002 * 109.46805 * 150.00550 * 1 2 3 28 28 H 1.09000 * 109.47239 * 300.00563 * 10 9 7 29 29 H 1.09008 * 109.46905 * 60.00248 * 10 9 7 30 30 H 1.09001 * 109.47067 * 60.00251 * 12 11 10 31 31 H 1.09000 * 109.47053 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.46904 * 299.99669 * 12 11 10 33 33 H 1.09000 * 109.47068 * 59.99807 * 13 11 10 34 34 H 1.09001 * 109.46514 * 179.97438 * 13 11 10 35 35 H 1.08999 * 109.46899 * 300.00076 * 13 11 10 36 36 H 0.97002 * 120.00097 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.30474 * 224.03103 * 22 5 4 38 38 H 1.08994 * 110.39102 * 101.91469 * 22 5 4 39 39 H 1.08999 * 110.78559 * 144.53092 * 23 22 5 40 40 H 1.08999 * 110.78275 * 267.97768 * 23 22 5 41 41 H 1.09006 * 110.28108 * 78.18064 * 24 4 3 42 42 H 1.08997 * 110.28597 * 316.08235 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2055 1.0495 0.0000 4 6 3.4762 0.7275 0.0005 5 6 3.5588 -0.6650 0.0003 6 6 2.2531 -1.1171 0.0005 7 6 1.8026 -2.5165 0.0018 8 8 2.6183 -3.4176 0.0026 9 8 0.4846 -2.8002 0.0021 10 6 0.1125 -4.2038 0.0029 11 6 -1.4125 -4.3271 0.0038 12 6 -1.9783 -3.6489 1.2530 13 6 -1.9796 -3.6498 -1.2455 14 6 -1.7986 -5.7839 0.0039 15 1 -1.0329 -6.5455 0.0038 16 6 -3.1295 -6.1443 0.0042 17 7 -4.0619 -5.2167 0.0038 18 14 -3.6081 -7.9499 0.0050 19 1 -3.7348 -8.4277 1.4052 20 1 -4.9070 -8.1180 -0.6948 21 1 -2.5630 -8.7393 -0.6948 22 6 5.0052 -1.0932 0.0003 23 6 5.7972 0.1585 -0.4365 24 6 4.8710 1.3132 0.0013 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 0.5160 -4.6872 -0.8869 29 1 0.5162 -4.6862 0.8931 30 1 -1.6990 -2.5952 1.2524 31 1 -3.0648 -3.7364 1.2534 32 1 -1.5743 -4.1314 2.1429 33 1 -1.5765 -4.1331 -2.1355 34 1 -3.0660 -3.7381 -1.2451 35 1 -1.7002 -2.5963 -1.2461 36 1 -4.9982 -5.4703 0.0043 37 1 5.1593 -1.9052 -0.7103 38 1 5.3095 -1.4034 0.9999 39 1 6.7539 0.2117 0.0831 40 1 5.9415 0.1673 -1.5168 41 1 5.1378 1.6524 1.0023 42 1 4.9347 2.1386 -0.7076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525292506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -25.105760 kcal Electronic energy + Delta-G solvation = -23892.565338 eV Core-core repulsion = 20452.894799 eV Total energy + Delta-G solvation = -3439.670539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -43.84728 -41.29076 -38.39656 -37.93283 -36.66186 -33.44834 -33.13854 -31.95533 -28.73856 -27.65359 -27.59339 -27.48156 -27.04135 -24.55948 -22.55295 -21.44472 -20.90258 -20.69546 -18.69068 -17.92476 -17.80000 -17.70385 -17.01895 -16.84951 -16.45249 -15.90251 -15.18595 -14.92295 -14.79402 -14.78107 -14.09538 -13.90366 -13.68587 -13.65141 -13.34813 -13.17831 -13.16887 -12.86617 -12.74863 -12.64951 -12.35481 -12.15806 -12.06240 -11.97133 -11.80812 -11.79835 -11.49968 -11.34107 -11.26443 -10.76633 -10.41849 -10.27953 -9.64938 -8.06764 -6.24296 -0.13162 1.25001 1.37751 1.42182 1.44452 1.51945 1.61603 1.75923 2.43740 2.81874 3.17307 3.38747 3.85096 4.00014 4.14044 4.20118 4.22370 4.23245 4.26154 4.29899 4.55878 4.60910 4.62553 4.78317 4.83760 4.86904 5.01939 5.02284 5.03647 5.16129 5.19876 5.22855 5.26178 5.39396 5.40208 5.45201 5.62205 5.62965 5.69749 6.06986 6.15036 6.34930 6.50924 6.79745 6.91859 7.43811 8.92735 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.003605 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.174579 B = 7764.150817 C = 8366.647063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.264 5.264 3 N -0.263 5.263 4 C -0.012 4.012 5 C -0.157 4.157 6 C -0.038 4.038 7 C 0.533 3.467 8 O -0.524 6.524 9 O -0.343 6.343 10 C 0.096 3.904 11 C 0.064 3.936 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.031 3.969 17 N -0.897 5.897 18 Si 0.950 3.050 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.274 1.274 22 C -0.052 4.052 23 C -0.103 4.103 24 C -0.023 4.023 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.504 13.610 -0.159 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.054 5.054 3 N -0.097 5.097 4 C -0.169 4.169 5 C -0.168 4.168 6 C -0.162 4.162 7 C 0.378 3.622 8 O -0.412 6.412 9 O -0.259 6.259 10 C 0.023 3.977 11 C 0.064 3.936 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.573 4.573 15 H 0.067 0.933 16 C -0.170 4.170 17 N -0.535 5.535 18 Si 0.776 3.224 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.199 1.199 22 C -0.090 4.090 23 C -0.141 4.141 24 C -0.062 4.062 25 H 0.116 0.884 26 H 0.138 0.862 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.567 14.189 -0.166 19.632 hybrid contribution -0.454 -2.228 0.056 2.275 sum 13.113 11.960 -0.110 17.748 Atomic orbital electron populations 1.22623 0.70460 1.06803 1.06028 1.46128 1.08613 1.00700 1.49990 1.72652 1.03821 1.13306 1.19957 1.23647 0.93734 0.94121 1.05425 1.21784 0.94597 0.96384 1.04065 1.19793 0.91695 0.85823 1.18870 1.20014 0.81631 0.87737 0.72865 1.90819 1.55452 1.47521 1.47440 1.86582 1.23840 1.32457 1.83053 1.23407 0.98477 0.75523 1.00267 1.18261 0.86141 0.95038 0.94175 1.21631 1.02816 0.96820 0.96385 1.21643 1.02865 0.96757 0.96399 1.21193 0.92339 0.91492 1.52297 0.93305 1.25458 0.96294 1.00860 0.94350 1.69920 1.00350 1.33251 1.50028 0.85682 0.77563 0.81015 0.78112 1.20345 1.20706 1.19874 1.20637 0.85663 0.99779 1.02913 1.22449 0.98453 0.90470 1.02694 1.20664 0.82406 0.98786 1.04327 0.88402 0.86190 0.87976 0.92935 0.92945 0.94525 0.91681 0.96336 0.96282 0.91646 0.94555 0.92805 0.91065 0.89222 0.86567 0.89896 0.87823 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 10.81 127.77 1.38 3.32 16 2 N -0.26 -7.91 3.75 -356.28 -1.34 -9.24 16 3 N -0.26 -7.62 11.91 -47.04 -0.56 -8.18 16 4 C -0.01 -0.32 8.13 43.16 0.35 0.03 16 5 C -0.16 -4.53 6.83 -19.53 -0.13 -4.66 16 6 C -0.04 -1.28 6.96 40.67 0.28 -0.99 16 7 C 0.53 20.34 7.93 70.12 0.56 20.90 16 8 O -0.52 -22.06 16.71 19.68 0.33 -21.74 16 9 O -0.34 -13.30 6.36 -57.25 -0.36 -13.67 16 10 C 0.10 4.18 4.27 71.98 0.31 4.49 16 11 C 0.06 3.03 0.58 -52.93 -0.03 3.00 16 12 C -0.12 -5.44 8.11 71.98 0.58 -4.86 16 13 C -0.12 -5.43 8.11 71.99 0.58 -4.85 16 14 C -0.54 -28.14 8.01 25.60 0.21 -27.93 16 15 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 16 C 0.03 1.60 5.15 84.65 0.44 2.04 16 17 N -0.90 -47.58 9.35 21.45 0.20 -47.38 16 18 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 C -0.05 -1.09 6.76 30.38 0.21 -0.89 16 23 C -0.10 -1.28 7.07 31.54 0.22 -1.06 16 24 C -0.02 -0.34 6.76 30.50 0.21 -0.13 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.10 2.79 5.74 -2.39 -0.01 2.78 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.04 1.46 7.68 -2.39 -0.02 1.45 16 31 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 35 H 0.04 1.45 7.26 -2.39 -0.02 1.43 16 36 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -63.24 340.97 6.47 -56.77 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.02 Total: 11.00 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.16 Total: -11.60 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.70 Total: -64.80 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.03 Total: -35.40 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -63.24 6.47 -56.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525292506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.666 kcal (2) G-P(sol) polarization free energy of solvation -63.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds