Wall clock time and date at job start Tue Mar 31 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47662 * 2 1 4 4 N 1.46493 * 109.47539 * 179.97438 * 3 2 1 5 5 N 1.39927 * 125.74624 * 269.99475 * 4 3 2 6 6 C 1.30424 * 108.92220 * 179.97438 * 5 4 3 7 7 C 1.41342 * 108.01391 * 359.78089 * 6 5 4 8 8 C 1.47284 * 126.43254 * 180.25858 * 7 6 5 9 9 O 1.21519 * 120.00509 * 180.11748 * 8 7 6 10 10 O 1.34756 * 119.99747 * 0.12009 * 8 7 6 11 11 C 1.45200 * 117.00249 * 175.18729 * 10 8 7 12 12 C 1.50704 * 112.84940 * 54.49636 * 11 10 8 13 13 H 1.07999 * 120.00308 * 244.95337 * 12 11 10 14 14 C 1.37881 * 119.99705 * 64.95346 * 12 11 10 15 15 N 1.31515 * 120.00246 * 354.96199 * 14 12 11 16 16 Si 1.86797 * 119.99765 * 174.95475 * 14 12 11 17 17 H 1.48499 * 109.46972 * 90.00259 * 16 14 12 18 18 H 1.48500 * 109.47433 * 210.00433 * 16 14 12 19 19 H 1.48497 * 109.47486 * 330.00567 * 16 14 12 20 20 C 1.53782 * 113.61394 * 283.19671 * 11 10 8 21 21 C 1.53782 * 87.07902 * 220.01698 * 20 11 10 22 22 C 1.53783 * 113.61662 * 185.69373 * 11 10 8 23 23 C 1.34227 * 125.74457 * 89.99653 * 4 3 2 24 24 C 1.50701 * 126.29226 * 359.96746 * 23 4 3 25 25 H 1.09006 * 109.46619 * 300.00797 * 1 2 3 26 26 H 1.09003 * 109.46868 * 59.99981 * 1 2 3 27 27 H 1.08991 * 109.47537 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47196 * 239.99636 * 2 1 3 29 29 H 1.09007 * 109.47335 * 119.99899 * 2 1 3 30 30 H 1.08997 * 109.47553 * 59.99309 * 3 2 1 31 31 H 1.09007 * 109.46663 * 300.00310 * 3 2 1 32 32 H 1.08004 * 125.99885 * 179.97438 * 6 5 4 33 33 H 0.96994 * 119.99833 * 184.99954 * 15 14 12 34 34 H 1.09003 * 113.61097 * 334.56298 * 20 11 10 35 35 H 1.08988 * 113.61916 * 105.46733 * 20 11 10 36 36 H 1.08999 * 113.61550 * 270.87966 * 21 20 11 37 37 H 1.08999 * 113.69034 * 139.99041 * 21 20 11 38 38 H 1.08998 * 113.61609 * 254.52471 * 22 11 10 39 39 H 1.09004 * 113.61232 * 25.35266 * 22 11 10 40 40 H 1.09001 * 109.47438 * 89.99868 * 24 23 4 41 41 H 1.08998 * 109.47310 * 329.99805 * 24 23 4 42 42 H 1.09004 * 109.46955 * 209.99742 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3220 1.4427 1.1366 6 6 5.5706 1.4420 0.7597 7 6 5.6006 1.4361 -0.6534 8 6 6.8038 1.4281 -1.5028 9 8 6.6934 1.4258 -2.7129 10 8 8.0272 1.4233 -0.9379 11 6 9.1656 1.3070 -1.8316 12 6 9.1702 2.3566 -2.9131 13 1 9.0612 2.0665 -3.9477 14 6 9.3136 3.6872 -2.5817 15 7 9.3468 4.0504 -1.3181 16 14 9.4609 4.9743 -3.9275 17 1 8.1082 5.4671 -4.2912 18 1 10.2864 6.1083 -3.4398 19 1 10.1053 4.3706 -5.1214 20 6 9.3942 -0.1207 -2.3554 21 6 10.8991 0.1374 -2.1721 22 6 10.5115 1.1700 -1.1004 23 6 4.2896 1.4422 -1.0885 24 6 3.8255 1.4412 -2.5222 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 6.4309 1.4424 1.4127 33 1 9.3746 4.9913 -1.0845 34 1 9.0008 -0.8954 -1.6972 35 1 9.0981 -0.2570 -3.3954 36 1 11.3768 0.5758 -3.0483 37 1 11.4453 -0.7187 -1.7761 38 1 11.1173 2.0758 -1.1275 39 1 10.4233 0.7495 -0.0987 40 1 3.7131 2.4686 -2.8685 41 1 2.8671 0.9269 -2.5935 42 1 4.5606 0.9274 -3.1417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525500152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:57 Heat of formation + Delta-G solvation = 1.910447 kcal Electronic energy + Delta-G solvation = -24038.058004 eV Core-core repulsion = 20599.558976 eV Total energy + Delta-G solvation = -3438.499028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09138 -38.84342 -36.80798 -35.48994 -33.97362 -32.19360 -32.16916 -31.06498 -27.37183 -26.38481 -25.95486 -24.47686 -23.30912 -22.20845 -21.84624 -20.15567 -18.86211 -18.46542 -17.15594 -16.16417 -15.61699 -15.33168 -15.03705 -14.72780 -14.67061 -14.07690 -14.01057 -13.73857 -13.35784 -13.14834 -12.78105 -12.58393 -12.43475 -12.23870 -12.06299 -11.85883 -11.59286 -11.49873 -11.12661 -11.06274 -10.96547 -10.79524 -10.44607 -10.30045 -10.19845 -9.84698 -9.69618 -9.13863 -9.08509 -8.69426 -8.41955 -8.39875 -8.17098 -6.00542 -4.08660 1.88094 2.52767 2.69234 3.32904 3.39009 3.43020 4.18571 4.36284 4.44124 4.51912 4.56835 4.77708 4.90656 4.98447 5.16166 5.24188 5.31949 5.37219 5.42757 5.66839 5.73117 5.75044 5.79498 5.84556 5.89351 5.90842 6.01647 6.07496 6.26077 6.39669 6.54541 6.65268 6.71879 6.90389 6.95418 7.12617 7.17686 7.40834 7.66195 7.89360 7.90307 8.05313 8.53110 8.92112 9.44607 9.59355 11.04322 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.004561 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.496372 B = 6136.890822 C = 6664.410886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.131 3.869 4 N -0.368 5.368 5 N -0.313 5.313 6 C 0.102 3.898 7 C -0.262 4.262 8 C 0.541 3.459 9 O -0.511 6.511 10 O -0.345 6.345 11 C 0.242 3.758 12 C -0.501 4.501 13 H 0.067 0.933 14 C 0.074 3.926 15 N -0.866 5.866 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.161 4.161 21 C -0.131 4.131 22 C -0.107 4.107 23 C 0.144 3.856 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.194 0.806 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 -6.526 2.528 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.010 3.990 4 N -0.148 5.148 5 N -0.132 5.132 6 C -0.085 4.085 7 C -0.275 4.275 8 C 0.384 3.616 9 O -0.401 6.401 10 O -0.261 6.261 11 C 0.208 3.792 12 C -0.539 4.539 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.503 5.503 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.199 4.199 21 C -0.168 4.168 22 C -0.145 4.145 23 C 0.014 3.986 24 C -0.155 4.155 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.211 0.789 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.898 -6.361 3.306 15.638 hybrid contribution 0.539 0.919 -1.273 1.660 sum -13.360 -5.442 2.033 14.568 Atomic orbital electron populations 1.21694 0.94354 1.02415 1.02178 1.21951 0.96559 0.95956 1.03610 1.21764 0.74382 0.98391 1.04454 1.48379 1.06225 1.56719 1.03507 1.77104 1.02091 1.26655 1.07326 1.24158 0.94755 0.95156 0.94400 1.19701 0.91715 1.22428 0.93626 1.19437 0.83160 0.73268 0.85740 1.90680 1.87615 1.46674 1.15158 1.86475 1.14149 1.81818 1.43649 1.21146 0.79919 0.90617 0.87529 1.20897 1.50133 0.90401 0.92448 0.91526 1.25016 0.94099 0.98591 0.95364 1.70021 1.47929 1.16482 1.15861 0.86596 0.78105 0.81112 0.82312 1.20663 1.21209 1.19625 1.23557 0.96344 0.99240 1.00772 1.22509 0.95770 0.98424 1.00130 1.22888 0.97328 0.98316 0.95978 1.21417 0.90133 0.96172 0.90919 1.20662 1.02024 1.04003 0.88825 0.92289 0.92318 0.92009 0.91217 0.90826 0.88622 0.88967 0.78907 0.92921 0.92136 0.92120 0.90299 0.93095 0.90610 0.92316 0.89803 0.91714 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.14 -1.26 6.26 -26.73 -0.17 -1.43 16 3 C 0.13 1.35 6.03 -4.05 -0.02 1.33 16 4 N -0.37 -5.60 3.58 -56.59 -0.20 -5.80 16 5 N -0.31 -5.43 12.50 30.87 0.39 -5.04 16 6 C 0.10 1.91 11.87 -16.97 -0.20 1.71 16 7 C -0.26 -5.39 6.13 -105.08 -0.64 -6.03 16 8 C 0.54 13.19 7.60 34.41 0.26 13.45 16 9 O -0.51 -13.24 13.20 -19.28 -0.25 -13.49 16 10 O -0.34 -8.89 9.77 -40.64 -0.40 -9.29 16 11 C 0.24 6.16 0.50 -90.96 -0.05 6.11 16 12 C -0.50 -13.97 6.29 -34.44 -0.22 -14.19 16 13 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 14 C 0.07 2.07 5.24 -17.82 -0.09 1.98 16 15 N -0.87 -24.82 12.54 55.43 0.70 -24.12 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.16 -3.57 7.29 -25.92 -0.19 -3.76 16 21 C -0.13 -2.65 7.80 -25.92 -0.20 -2.85 16 22 C -0.11 -2.48 7.19 -25.92 -0.19 -2.67 16 23 C 0.14 2.47 7.01 -81.59 -0.57 1.90 16 24 C -0.10 -1.38 9.35 36.01 0.34 -1.05 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.77 7.62 -51.93 -0.40 0.37 16 32 H 0.19 3.29 8.06 -52.48 -0.42 2.87 16 33 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.36 8.09 -51.94 -0.42 0.94 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.89 7.63 -51.93 -0.40 1.49 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 42 H 0.11 1.78 6.49 -51.93 -0.34 1.44 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -32.64 352.19 -7.63 -40.27 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.57 Total: 1.47 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.57 Total: -6.07 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.88 Total: -34.97 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.65 Total: -22.78 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.64 -7.63 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525500152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.182 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds