Wall clock time and date at job start Tue Mar 31 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47662 * 2 1 4 4 N 1.46493 * 109.47539 * 179.97438 * 3 2 1 5 5 N 1.39927 * 125.74624 * 269.99475 * 4 3 2 6 6 C 1.30424 * 108.92220 * 179.97438 * 5 4 3 7 7 C 1.41342 * 108.01391 * 359.78089 * 6 5 4 8 8 C 1.47284 * 126.43254 * 180.25858 * 7 6 5 9 9 O 1.21519 * 120.00509 * 180.11748 * 8 7 6 10 10 O 1.34756 * 119.99747 * 0.12009 * 8 7 6 11 11 C 1.45200 * 117.00249 * 175.18729 * 10 8 7 12 12 C 1.50704 * 112.84940 * 54.49636 * 11 10 8 13 13 H 1.07999 * 120.00308 * 244.95337 * 12 11 10 14 14 C 1.37881 * 119.99705 * 64.95346 * 12 11 10 15 15 N 1.31515 * 120.00246 * 354.96199 * 14 12 11 16 16 Si 1.86797 * 119.99765 * 174.95475 * 14 12 11 17 17 H 1.48499 * 109.46972 * 90.00259 * 16 14 12 18 18 H 1.48500 * 109.47433 * 210.00433 * 16 14 12 19 19 H 1.48497 * 109.47486 * 330.00567 * 16 14 12 20 20 C 1.53782 * 113.61394 * 283.19671 * 11 10 8 21 21 C 1.53782 * 87.07902 * 220.01698 * 20 11 10 22 22 C 1.53783 * 113.61662 * 185.69373 * 11 10 8 23 23 C 1.34227 * 125.74457 * 89.99653 * 4 3 2 24 24 C 1.50701 * 126.29226 * 359.96746 * 23 4 3 25 25 H 1.09006 * 109.46619 * 300.00797 * 1 2 3 26 26 H 1.09003 * 109.46868 * 59.99981 * 1 2 3 27 27 H 1.08991 * 109.47537 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47196 * 239.99636 * 2 1 3 29 29 H 1.09007 * 109.47335 * 119.99899 * 2 1 3 30 30 H 1.08997 * 109.47553 * 59.99309 * 3 2 1 31 31 H 1.09007 * 109.46663 * 300.00310 * 3 2 1 32 32 H 1.08004 * 125.99885 * 179.97438 * 6 5 4 33 33 H 0.96994 * 119.99833 * 184.99954 * 15 14 12 34 34 H 1.09003 * 113.61097 * 334.56298 * 20 11 10 35 35 H 1.08988 * 113.61916 * 105.46733 * 20 11 10 36 36 H 1.08999 * 113.61550 * 270.87966 * 21 20 11 37 37 H 1.08999 * 113.69034 * 139.99041 * 21 20 11 38 38 H 1.08998 * 113.61609 * 254.52471 * 22 11 10 39 39 H 1.09004 * 113.61232 * 25.35266 * 22 11 10 40 40 H 1.09001 * 109.47438 * 89.99868 * 24 23 4 41 41 H 1.08998 * 109.47310 * 329.99805 * 24 23 4 42 42 H 1.09004 * 109.46955 * 209.99742 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3220 1.4427 1.1366 6 6 5.5706 1.4420 0.7597 7 6 5.6006 1.4361 -0.6534 8 6 6.8038 1.4281 -1.5028 9 8 6.6934 1.4258 -2.7129 10 8 8.0272 1.4233 -0.9379 11 6 9.1656 1.3070 -1.8316 12 6 9.1702 2.3566 -2.9131 13 1 9.0612 2.0665 -3.9477 14 6 9.3136 3.6872 -2.5817 15 7 9.3468 4.0504 -1.3181 16 14 9.4609 4.9743 -3.9275 17 1 8.1082 5.4671 -4.2912 18 1 10.2864 6.1083 -3.4398 19 1 10.1053 4.3706 -5.1214 20 6 9.3942 -0.1207 -2.3554 21 6 10.8991 0.1374 -2.1721 22 6 10.5115 1.1700 -1.1004 23 6 4.2896 1.4422 -1.0885 24 6 3.8255 1.4412 -2.5222 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 6.4309 1.4424 1.4127 33 1 9.3746 4.9913 -1.0845 34 1 9.0008 -0.8954 -1.6972 35 1 9.0981 -0.2570 -3.3954 36 1 11.3768 0.5758 -3.0483 37 1 11.4453 -0.7187 -1.7761 38 1 11.1173 2.0758 -1.1275 39 1 10.4233 0.7495 -0.0987 40 1 3.7131 2.4686 -2.8685 41 1 2.8671 0.9269 -2.5935 42 1 4.5606 0.9274 -3.1417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525500152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:57 Heat of formation + Delta-G solvation = -16.368983 kcal Electronic energy + Delta-G solvation = -24038.850660 eV Core-core repulsion = 20599.558976 eV Total energy + Delta-G solvation = -3439.291684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45363 -40.69872 -38.61951 -36.39873 -35.85401 -34.28926 -33.39901 -32.24038 -28.76814 -27.97448 -27.29100 -26.29719 -25.06435 -23.46637 -23.01323 -21.49671 -20.42847 -20.27326 -18.83602 -17.84332 -16.96179 -16.82843 -16.67987 -16.53079 -15.92334 -15.80105 -15.46352 -15.21702 -14.82745 -14.29519 -14.19473 -13.93905 -13.64429 -13.43712 -13.26655 -13.07933 -12.94570 -12.92609 -12.88040 -12.72431 -12.29321 -12.11462 -12.06827 -11.96536 -11.76851 -11.65843 -11.54679 -10.98459 -10.73591 -10.40570 -10.34960 -10.33130 -9.63653 -8.12180 -6.25588 0.48655 1.16283 1.34545 1.37667 1.38714 1.48377 2.39801 2.49357 2.63252 3.20115 3.54152 3.59641 3.85359 3.95002 4.02181 4.06327 4.10855 4.25141 4.27257 4.39190 4.48340 4.53008 4.58178 4.61345 4.73177 4.81841 4.89823 4.95012 5.01481 5.11175 5.11948 5.15148 5.19283 5.37003 5.40688 5.44638 5.51576 5.71692 5.84685 5.92316 6.08995 6.51668 6.59457 6.75294 7.40153 7.60704 8.91848 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.004561 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.496372 B = 6136.890822 C = 6664.410886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.353 5.353 5 N -0.317 5.317 6 C 0.096 3.904 7 C -0.308 4.308 8 C 0.533 3.467 9 O -0.539 6.539 10 O -0.359 6.359 11 C 0.215 3.785 12 C -0.511 4.511 13 H 0.048 0.952 14 C 0.031 3.969 15 N -0.891 5.891 16 Si 0.945 3.055 17 H -0.285 1.285 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.154 4.154 21 C -0.110 4.110 22 C -0.107 4.107 23 C 0.158 3.842 24 C -0.094 4.094 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.198 0.802 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.888 -6.999 2.333 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.133 5.133 5 N -0.136 5.136 6 C -0.090 4.090 7 C -0.321 4.321 8 C 0.379 3.621 9 O -0.431 6.431 10 O -0.275 6.275 11 C 0.181 3.819 12 C -0.549 4.549 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.529 5.529 16 Si 0.770 3.230 17 H -0.211 1.211 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.192 4.192 21 C -0.147 4.147 22 C -0.145 4.145 23 C 0.025 3.975 24 C -0.152 4.152 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.215 0.785 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.733 -6.845 3.132 17.441 hybrid contribution 0.947 1.031 -1.185 1.834 sum -14.786 -5.814 1.947 16.007 Atomic orbital electron populations 1.21669 0.92061 1.03131 1.03216 1.21896 0.98359 0.94483 1.02689 1.22338 0.71238 1.00012 1.06549 1.48804 1.07805 1.54421 1.02289 1.77057 1.01700 1.26535 1.08345 1.24223 0.95542 0.95441 0.93836 1.19660 0.91703 1.26510 0.94208 1.20025 0.83650 0.72416 0.86045 1.90641 1.87924 1.48265 1.16260 1.86449 1.14971 1.82179 1.43898 1.21422 0.80707 0.91904 0.87890 1.21003 1.50064 0.91543 0.92280 0.93356 1.25647 0.93975 1.00251 0.97207 1.70117 1.48991 1.16627 1.17207 0.85765 0.77819 0.79138 0.80262 1.21135 1.20198 1.18886 1.23487 0.97826 0.97700 1.00193 1.22426 0.94798 0.98610 0.98896 1.22868 0.95893 0.98326 0.97393 1.21755 0.89310 0.93944 0.92519 1.20726 1.03408 1.04703 0.86357 0.91657 0.90901 0.91507 0.91504 0.92481 0.87413 0.86082 0.78523 0.93036 0.90741 0.93169 0.90648 0.89118 0.93064 0.91141 0.89067 0.87245 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.14 -2.03 6.26 30.59 0.19 -1.83 16 3 C 0.12 2.05 6.03 86.38 0.52 2.57 16 4 N -0.35 -10.13 3.58 -332.96 -1.19 -11.32 16 5 N -0.32 -10.77 12.50 -56.25 -0.70 -11.47 16 6 C 0.10 3.64 11.87 85.67 1.02 4.65 16 7 C -0.31 -12.86 6.13 -20.16 -0.12 -12.98 16 8 C 0.53 26.83 7.60 70.20 0.53 27.36 16 9 O -0.54 -28.84 13.20 19.78 0.26 -28.58 16 10 O -0.36 -19.05 9.77 -56.66 -0.55 -19.60 16 11 C 0.21 11.15 0.50 -11.01 -0.01 11.14 16 12 C -0.51 -29.22 6.29 25.60 0.16 -29.06 16 13 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 14 C 0.03 1.78 5.24 84.66 0.44 2.22 16 15 N -0.89 -52.28 12.54 21.45 0.27 -52.02 16 16 Si 0.94 45.33 29.54 68.60 2.03 47.36 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.15 -6.82 7.29 31.12 0.23 -6.59 16 21 C -0.11 -4.32 7.80 31.12 0.24 -4.08 16 22 C -0.11 -4.97 7.19 31.12 0.22 -4.75 16 23 C 0.16 5.27 7.01 42.17 0.30 5.56 16 24 C -0.09 -2.52 9.35 71.24 0.67 -1.85 16 25 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.12 1.48 7.62 -2.38 -0.02 1.46 16 32 H 0.20 6.95 8.06 -2.91 -0.02 6.93 16 33 H 0.26 14.63 8.32 -92.71 -0.77 13.86 16 34 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.05 2.28 8.09 -2.39 -0.02 2.26 16 36 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.05 2.60 7.63 -2.39 -0.02 2.58 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.11 1.90 7.70 -2.39 -0.02 1.88 16 42 H 0.08 2.76 6.49 -2.38 -0.02 2.74 16 Total: -1.00 -72.72 352.19 6.22 -66.51 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.00 Total: 17.36 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.11 Total: -8.24 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.63 Total: -74.81 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -0.29 Total: -48.18 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.72 6.22 -66.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525500152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.140 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds