Wall clock time and date at job start Tue Mar 31 2020 07:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 117.00440 * 2 1 4 4 C 1.39146 * 120.47165 * 0.25040 * 3 2 1 5 5 C 1.38537 * 118.37079 * 180.26471 * 4 3 2 6 6 C 1.38248 * 119.22319 * 359.74883 * 5 4 3 7 7 N 1.31851 * 120.88756 * 359.97438 * 6 5 4 8 8 C 1.31834 * 121.77937 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65836 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 90.00054 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50697 * 109.46949 * 90.00203 * 13 12 10 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99813 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00047 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47231 * 89.99796 * 18 16 14 20 20 H 1.48499 * 109.47342 * 210.00322 * 18 16 14 21 21 H 1.48505 * 109.46935 * 330.00024 * 18 16 14 22 22 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 23 23 C 1.52992 * 109.47288 * 119.99477 * 22 12 10 24 24 C 1.52998 * 109.46848 * 239.99814 * 22 12 10 25 25 H 1.09001 * 109.47616 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 300.00307 * 1 2 3 27 27 H 1.08999 * 109.46693 * 59.99844 * 1 2 3 28 28 H 1.07993 * 120.81211 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.38452 * 179.73298 * 5 4 3 30 30 H 1.07996 * 119.55882 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47210 * 330.00348 * 9 8 7 32 32 H 1.08994 * 109.47551 * 210.00000 * 9 8 7 33 33 H 1.09001 * 109.47567 * 210.00057 * 13 12 10 34 34 H 1.09005 * 109.47076 * 330.00563 * 13 12 10 35 35 H 0.97004 * 119.99796 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46745 * 359.97438 * 22 12 10 37 37 H 1.09005 * 109.47280 * 60.00263 * 23 22 12 38 38 H 1.09002 * 109.46985 * 180.02562 * 23 22 12 39 39 H 1.09000 * 109.47344 * 300.00445 * 23 22 12 40 40 H 1.09006 * 109.47195 * 59.99998 * 24 22 12 41 41 H 1.09002 * 109.46792 * 179.97438 * 24 22 12 42 42 H 1.08995 * 109.47040 * 299.99526 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3842 0.0052 5 6 1.9718 3.5946 -0.0006 6 6 3.3543 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0329 0.0003 10 6 4.5343 -0.3840 1.4211 11 8 4.1068 0.2782 2.3429 12 7 5.2547 -1.4961 1.6675 13 6 5.5219 -1.9047 3.0488 14 6 4.4209 -2.8169 3.5247 15 1 3.6040 -3.0676 2.8642 16 6 4.4564 -3.3316 4.8033 17 7 3.4957 -4.1281 5.2184 18 14 5.8689 -2.8975 5.9460 19 1 5.5257 -1.6742 6.7147 20 1 6.1087 -4.0218 6.8860 21 1 7.0953 -2.6513 5.1456 22 6 5.7707 -2.2963 0.5541 23 6 7.2974 -2.3557 0.6332 24 6 5.2002 -3.7135 0.6373 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2185 2.3519 0.0098 29 1 1.4235 4.5250 -0.0011 30 1 3.8851 4.5380 -0.0111 31 1 5.1961 0.2137 -0.5178 32 1 3.7055 -0.7591 -0.5093 33 1 6.4751 -2.4315 3.0939 34 1 5.5639 -1.0221 3.6871 35 1 3.5208 -4.4905 6.1179 36 1 5.4730 -1.8399 -0.3899 37 1 7.5949 -2.8123 1.5773 38 1 7.6813 -2.9507 -0.1954 39 1 7.7039 -1.3460 0.5741 40 1 4.1124 -3.6712 0.5809 41 1 5.5838 -4.3088 -0.1914 42 1 5.4976 -4.1701 1.5813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542478319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:49 Heat of formation + Delta-G solvation = -33.756540 kcal Electronic energy + Delta-G solvation = -24173.033396 eV Core-core repulsion = 20732.987731 eV Total energy + Delta-G solvation = -3440.045665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -40.72079 -39.02623 -38.02205 -35.93567 -33.12066 -32.56593 -31.33975 -30.90540 -28.97258 -27.48784 -26.98844 -26.65962 -23.02928 -22.82122 -21.82600 -21.10917 -18.23970 -17.84556 -17.09115 -16.82130 -16.73802 -16.11549 -15.69842 -15.00709 -14.59020 -14.32159 -13.92943 -13.83544 -13.64981 -13.48364 -13.07878 -12.91588 -12.64961 -12.43352 -12.21405 -11.81327 -11.68139 -11.57526 -11.42649 -11.35132 -11.26221 -10.84895 -10.78808 -10.45502 -10.26277 -10.03247 -9.70911 -9.49019 -9.38535 -8.90782 -8.50922 -8.21448 -7.59669 -6.01482 -3.97708 1.17165 1.34880 3.23650 3.33515 3.39442 3.42321 3.48728 3.70705 4.05978 4.41144 4.46132 4.66169 4.73226 4.98083 5.10212 5.15881 5.18376 5.27845 5.30799 5.34382 5.47372 5.50706 5.55478 5.67127 5.70636 5.88898 6.02984 6.05348 6.13908 6.18148 6.32525 6.39175 6.48920 6.61084 6.86475 7.05355 7.08139 7.25779 7.48969 7.70639 8.09094 8.38783 8.56581 9.03161 9.11951 9.60114 11.11852 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.005041 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.368453 B = 5552.600002 C = 5884.299198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.095 3.905 4 C -0.167 4.167 5 C -0.139 4.139 6 C 0.059 3.941 7 N -0.441 5.441 8 C 0.135 3.865 9 C -0.087 4.087 10 C 0.520 3.480 11 O -0.536 6.536 12 N -0.589 5.589 13 C 0.216 3.784 14 C -0.517 4.517 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.872 3.128 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.133 3.867 23 C -0.163 4.163 24 C -0.156 4.156 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.156 0.844 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 9.574 -15.465 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.212 6.212 3 C 0.047 3.953 4 C -0.194 4.194 5 C -0.159 4.159 6 C -0.098 4.098 7 N -0.150 5.150 8 C -0.005 4.005 9 C -0.128 4.128 10 C 0.306 3.694 11 O -0.413 6.413 12 N -0.321 5.321 13 C 0.095 3.905 14 C -0.555 4.555 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.699 3.301 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.028 3.972 23 C -0.221 4.221 24 C -0.214 4.214 25 H 0.122 0.878 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.930 9.636 -14.802 17.686 hybrid contribution -0.666 0.267 0.820 1.090 sum -1.597 9.903 -13.981 17.208 Atomic orbital electron populations 1.23102 0.78299 1.04459 1.00980 1.86164 1.21407 1.25698 1.87966 1.19863 0.93154 0.85266 0.97010 1.21627 1.00599 0.92162 1.04972 1.21904 0.95754 0.98026 1.00209 1.22535 0.91404 0.96246 0.99573 1.67442 1.40026 0.97507 1.09998 1.20032 0.87865 0.93437 0.99203 1.20535 1.00812 0.94002 0.97465 1.19956 0.78682 0.80953 0.89798 1.90668 1.50679 1.53815 1.46165 1.47958 1.52242 1.23853 1.08053 1.19601 0.96853 0.95895 0.78116 1.21362 1.08066 1.26989 0.99114 0.90497 1.24842 0.95820 0.94834 0.97601 1.69899 1.32688 1.33012 1.18322 0.86916 0.83407 0.78324 0.81448 1.20102 1.21213 1.19078 1.21042 0.93587 0.93056 0.89483 1.22176 0.95622 1.01734 1.02570 1.22134 1.01405 0.95179 1.02704 0.87792 0.92500 0.92906 0.84471 0.84786 0.82699 0.87745 0.87415 0.95137 0.94891 0.92765 0.90416 0.91655 0.92034 0.92781 0.92384 0.93276 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.83 101.05 0.99 1.29 16 2 O -0.30 -4.74 9.54 -19.46 -0.19 -4.92 16 3 C 0.10 1.52 6.67 -39.07 -0.26 1.26 16 4 C -0.17 -2.16 9.14 -39.13 -0.36 -2.52 16 5 C -0.14 -1.63 10.11 -39.47 -0.40 -2.03 16 6 C 0.06 0.79 11.18 -17.54 -0.20 0.59 16 7 N -0.44 -7.35 10.27 -9.36 -0.10 -7.45 16 8 C 0.14 2.34 5.29 -82.42 -0.44 1.90 16 9 C -0.09 -1.47 4.09 -29.03 -0.12 -1.59 16 10 C 0.52 11.37 7.67 -10.98 -0.08 11.29 16 11 O -0.54 -14.17 15.61 5.55 0.09 -14.08 16 12 N -0.59 -12.55 2.39 -167.47 -0.40 -12.95 16 13 C 0.22 5.40 3.66 -5.20 -0.02 5.38 16 14 C -0.52 -14.82 8.38 -34.44 -0.29 -15.11 16 15 H 0.08 2.41 7.87 -52.48 -0.41 2.00 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 18 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 22 C 0.13 2.18 3.17 -67.93 -0.22 1.97 16 23 C -0.16 -2.34 9.17 37.15 0.34 -2.00 16 24 C -0.16 -2.66 8.47 37.16 0.31 -2.35 16 25 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.61 7.69 -51.93 -0.40 0.21 16 27 H 0.05 0.44 7.71 -51.93 -0.40 0.04 16 28 H 0.14 1.36 6.45 -52.49 -0.34 1.02 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.10 1.50 7.79 -51.93 -0.40 1.10 16 32 H 0.11 1.64 7.16 -51.93 -0.37 1.27 16 33 H 0.03 0.73 5.49 -51.93 -0.28 0.44 16 34 H 0.03 0.90 6.85 -51.93 -0.36 0.54 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.08 1.06 5.77 -51.93 -0.30 0.76 16 37 H 0.06 1.04 6.66 -51.93 -0.35 0.69 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -36.52 343.77 -6.23 -42.75 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.10 Total: 1.17 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.82 Total: 0.07 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.28 Total: -47.51 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.10 Total: -19.01 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.52 -6.23 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542478319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.997 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds