Wall clock time and date at job start Tue Mar 31 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 117.00440 * 2 1 4 4 C 1.39146 * 120.47165 * 0.25040 * 3 2 1 5 5 C 1.38537 * 118.37079 * 180.26471 * 4 3 2 6 6 C 1.38248 * 119.22319 * 359.74883 * 5 4 3 7 7 N 1.31851 * 120.88756 * 359.97438 * 6 5 4 8 8 C 1.31834 * 121.77937 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65836 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 90.00054 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50697 * 109.46949 * 90.00203 * 13 12 10 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99813 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00047 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47231 * 89.99796 * 18 16 14 20 20 H 1.48499 * 109.47342 * 210.00322 * 18 16 14 21 21 H 1.48505 * 109.46935 * 330.00024 * 18 16 14 22 22 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 23 23 C 1.52992 * 109.47288 * 119.99477 * 22 12 10 24 24 C 1.52998 * 109.46848 * 239.99814 * 22 12 10 25 25 H 1.09001 * 109.47616 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 300.00307 * 1 2 3 27 27 H 1.08999 * 109.46693 * 59.99844 * 1 2 3 28 28 H 1.07993 * 120.81211 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.38452 * 179.73298 * 5 4 3 30 30 H 1.07996 * 119.55882 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47210 * 330.00348 * 9 8 7 32 32 H 1.08994 * 109.47551 * 210.00000 * 9 8 7 33 33 H 1.09001 * 109.47567 * 210.00057 * 13 12 10 34 34 H 1.09005 * 109.47076 * 330.00563 * 13 12 10 35 35 H 0.97004 * 119.99796 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46745 * 359.97438 * 22 12 10 37 37 H 1.09005 * 109.47280 * 60.00263 * 23 22 12 38 38 H 1.09002 * 109.46985 * 180.02562 * 23 22 12 39 39 H 1.09000 * 109.47344 * 300.00445 * 23 22 12 40 40 H 1.09006 * 109.47195 * 59.99998 * 24 22 12 41 41 H 1.09002 * 109.46792 * 179.97438 * 24 22 12 42 42 H 1.08995 * 109.47040 * 299.99526 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3842 0.0052 5 6 1.9718 3.5946 -0.0006 6 6 3.3543 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0329 0.0003 10 6 4.5343 -0.3840 1.4211 11 8 4.1068 0.2782 2.3429 12 7 5.2547 -1.4961 1.6675 13 6 5.5219 -1.9047 3.0488 14 6 4.4209 -2.8169 3.5247 15 1 3.6040 -3.0676 2.8642 16 6 4.4564 -3.3316 4.8033 17 7 3.4957 -4.1281 5.2184 18 14 5.8689 -2.8975 5.9460 19 1 5.5257 -1.6742 6.7147 20 1 6.1087 -4.0218 6.8860 21 1 7.0953 -2.6513 5.1456 22 6 5.7707 -2.2963 0.5541 23 6 7.2974 -2.3557 0.6332 24 6 5.2002 -3.7135 0.6373 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2185 2.3519 0.0098 29 1 1.4235 4.5250 -0.0011 30 1 3.8851 4.5380 -0.0111 31 1 5.1961 0.2137 -0.5178 32 1 3.7055 -0.7591 -0.5093 33 1 6.4751 -2.4315 3.0939 34 1 5.5639 -1.0221 3.6871 35 1 3.5208 -4.4905 6.1179 36 1 5.4730 -1.8399 -0.3899 37 1 7.5949 -2.8123 1.5773 38 1 7.6813 -2.9507 -0.1954 39 1 7.7039 -1.3460 0.5741 40 1 4.1124 -3.6712 0.5809 41 1 5.5838 -4.3088 -0.1914 42 1 5.4976 -4.1701 1.5813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542478319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:44 Heat of formation + Delta-G solvation = -59.871758 kcal Electronic energy + Delta-G solvation = -24174.165837 eV Core-core repulsion = 20732.987731 eV Total energy + Delta-G solvation = -3441.178106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -41.84034 -40.61780 -39.08000 -37.57402 -34.93377 -34.09332 -32.56605 -32.44756 -30.57310 -28.71624 -28.28146 -27.93985 -24.73715 -23.83555 -23.33281 -22.55007 -19.68915 -19.06532 -18.98705 -18.31750 -18.14006 -17.32716 -16.76447 -16.66259 -16.22549 -15.76167 -15.28989 -15.07268 -14.87411 -14.83900 -14.57395 -14.22010 -14.13840 -13.97654 -13.60216 -13.41611 -13.11871 -12.93792 -12.84256 -12.62093 -12.40400 -12.36160 -12.30813 -12.25152 -11.91592 -11.72590 -11.52170 -10.84973 -10.79066 -10.55421 -10.52214 -9.38825 -9.30902 -8.30167 -6.31542 0.11934 0.31740 1.30174 1.34177 1.42199 1.82432 2.24205 2.30065 2.31850 2.84091 3.03717 3.30881 3.65400 3.79467 3.83047 4.00661 4.08924 4.23543 4.29432 4.30961 4.33069 4.43472 4.47486 4.49107 4.65938 4.71235 4.78361 4.89842 4.92896 4.97187 5.06102 5.07503 5.11078 5.11790 5.42086 5.49244 5.53395 5.61172 5.73263 6.25179 6.30612 6.68295 6.74980 7.02377 7.26086 7.45655 8.86539 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.005041 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.368453 B = 5552.600002 C = 5884.299198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.073 3.927 4 C -0.169 4.169 5 C -0.126 4.126 6 C 0.047 3.953 7 N -0.468 5.468 8 C 0.096 3.904 9 C -0.073 4.073 10 C 0.511 3.489 11 O -0.593 6.593 12 N -0.594 5.594 13 C 0.227 3.773 14 C -0.515 4.515 15 H 0.034 0.966 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.938 3.062 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.241 1.241 22 C 0.124 3.876 23 C -0.157 4.157 24 C -0.149 4.149 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.167 0.833 29 H 0.178 0.822 30 H 0.186 0.814 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.266 0.734 36 H 0.113 0.887 37 H 0.045 0.955 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 11.116 -17.270 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.025 3.975 4 C -0.195 4.195 5 C -0.145 4.145 6 C -0.110 4.110 7 N -0.177 5.177 8 C -0.043 4.043 9 C -0.113 4.113 10 C 0.299 3.701 11 O -0.474 6.474 12 N -0.325 5.325 13 C 0.104 3.896 14 C -0.554 4.554 15 H 0.052 0.948 16 C -0.186 4.186 17 N -0.586 5.586 18 Si 0.761 3.239 19 H -0.207 1.207 20 H -0.199 1.199 21 H -0.164 1.164 22 C 0.021 3.979 23 C -0.215 4.215 24 C -0.207 4.207 25 H 0.129 0.871 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.184 0.816 29 H 0.195 0.805 30 H 0.203 0.797 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.124 11.143 -16.662 20.045 hybrid contribution -1.134 -0.164 1.308 1.739 sum -1.009 10.979 -15.354 18.903 Atomic orbital electron populations 1.23367 0.76308 1.05537 1.02419 1.86104 1.23677 1.26360 1.88243 1.20094 0.93288 0.86281 0.97801 1.22068 1.02112 0.91597 1.03768 1.22398 0.95373 0.99286 0.97487 1.23193 0.92680 0.96410 0.98725 1.67393 1.41210 0.98216 1.10914 1.20088 0.88733 0.93675 1.01803 1.20438 1.02349 0.94773 0.93748 1.20903 0.77371 0.80272 0.91535 1.90617 1.52775 1.55655 1.48331 1.48104 1.52207 1.24357 1.07827 1.19233 0.96111 0.93942 0.80275 1.21491 1.07866 1.27286 0.98711 0.94793 1.25738 0.98759 0.94701 0.99399 1.70043 1.35007 1.34526 1.19044 0.85861 0.80793 0.77890 0.79323 1.20733 1.19898 1.16395 1.21471 0.95235 0.92020 0.89147 1.22141 0.93433 1.02794 1.03103 1.22056 0.99951 0.96231 1.02499 0.87084 0.92541 0.89824 0.81581 0.80485 0.79711 0.85219 0.86238 0.93320 0.97334 0.92519 0.86946 0.93582 0.88276 0.92027 0.94883 0.88967 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.83 113.37 1.11 1.50 16 2 O -0.33 -10.56 9.54 -92.55 -0.88 -11.44 16 3 C 0.07 2.32 6.67 22.60 0.15 2.47 16 4 C -0.17 -4.03 9.14 22.56 0.21 -3.83 16 5 C -0.13 -2.57 10.11 22.34 0.23 -2.35 16 6 C 0.05 1.16 11.18 84.69 0.95 2.11 16 7 N -0.47 -15.26 10.27 -183.51 -1.88 -17.15 16 8 C 0.10 3.31 5.29 42.67 0.23 3.53 16 9 C -0.07 -2.45 4.09 29.10 0.12 -2.33 16 10 C 0.51 22.85 7.67 87.66 0.67 23.53 16 11 O -0.59 -32.67 15.61 -3.04 -0.05 -32.72 16 12 N -0.59 -25.64 2.39 -802.14 -1.91 -27.56 16 13 C 0.23 11.58 3.66 85.63 0.31 11.90 16 14 C -0.51 -30.85 8.38 25.60 0.21 -30.64 16 15 H 0.03 2.27 7.87 -2.91 -0.02 2.24 16 16 C 0.01 0.69 5.47 84.66 0.46 1.15 16 17 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 18 Si 0.94 46.09 27.47 68.60 1.88 47.98 16 19 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.24 -10.74 6.54 99.48 0.65 -10.09 16 22 C 0.12 3.91 3.17 44.99 0.14 4.05 16 23 C -0.16 -4.08 9.17 71.98 0.66 -3.42 16 24 C -0.15 -5.05 8.47 71.98 0.61 -4.44 16 25 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.18 7.69 -2.39 -0.02 1.16 16 27 H 0.08 1.22 7.71 -2.39 -0.02 1.20 16 28 H 0.17 2.80 6.45 -2.91 -0.02 2.79 16 29 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.13 3.54 7.79 -2.38 -0.02 3.52 16 32 H 0.12 3.62 7.16 -2.39 -0.02 3.60 16 33 H 0.05 2.31 5.49 -2.39 -0.01 2.30 16 34 H 0.01 0.48 6.85 -2.38 -0.02 0.47 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.11 2.79 5.77 -2.38 -0.01 2.78 16 37 H 0.05 1.37 6.66 -2.38 -0.02 1.36 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 1.82 6.92 -2.39 -0.02 1.81 16 Total: -1.00 -85.69 343.77 4.48 -81.21 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.96 Total: 16.87 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.06 Total: 3.25 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.50 Total: -105.14 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.93 Total: -44.17 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Total: -85.69 4.48 -81.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542478319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.342 kcal (2) G-P(sol) polarization free energy of solvation -85.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds