Wall clock time and date at job start Tue Mar 31 2020 07:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.52571 * 2 1 4 4 C 1.53047 * 109.49374 * 120.07732 * 2 1 3 5 5 C 1.53043 * 109.53641 * 181.31900 * 4 2 1 6 6 C 1.53625 * 109.24068 * 298.50969 * 5 4 2 7 7 N 1.46934 * 108.54663 * 54.85687 * 6 5 4 8 8 C 1.34771 * 120.63008 * 126.36442 * 7 6 5 9 9 O 1.21591 * 119.99556 * 184.94178 * 8 7 6 10 10 N 1.34773 * 120.00355 * 4.94710 * 8 7 6 11 11 C 1.40193 * 120.00057 * 174.86493 * 10 8 7 12 12 C 1.40400 * 125.97451 * 0.02562 * 11 10 8 13 13 C 1.35237 * 107.86709 * 179.73860 * 12 11 10 14 14 N 1.34963 * 107.86282 * 0.37040 * 13 12 11 15 15 C 1.46493 * 125.98030 * 179.89715 * 14 13 12 16 16 C 1.50696 * 109.47375 * 124.71513 * 15 14 13 17 17 H 1.07994 * 120.00287 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99987 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47182 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47462 * 119.99428 * 20 18 16 23 23 H 1.48503 * 109.46958 * 239.99819 * 20 18 16 24 24 N 1.31211 * 125.97094 * 179.97438 * 11 10 8 25 25 C 1.46926 * 118.73471 * 306.09718 * 7 6 5 26 26 H 1.09003 * 109.47524 * 180.08304 * 1 2 3 27 27 H 1.09003 * 109.47560 * 300.08441 * 1 2 3 28 28 H 1.09004 * 109.47079 * 60.08443 * 1 2 3 29 29 H 1.08997 * 109.45855 * 301.33433 * 4 2 1 30 30 H 1.08996 * 109.46129 * 61.30002 * 4 2 1 31 31 H 1.09001 * 109.50045 * 58.58248 * 5 4 2 32 32 H 1.09000 * 109.49739 * 178.68271 * 5 4 2 33 33 H 1.09000 * 109.74286 * 295.11986 * 6 5 4 34 34 H 1.09000 * 109.66974 * 174.54725 * 6 5 4 35 35 H 0.97004 * 119.99915 * 354.86485 * 10 8 7 36 36 H 1.08003 * 126.06527 * 359.97438 * 12 11 10 37 37 H 1.08003 * 126.07275 * 180.26674 * 13 12 11 38 38 H 1.09008 * 109.47120 * 244.71821 * 15 14 13 39 39 H 1.09000 * 109.47413 * 4.71143 * 15 14 13 40 40 H 0.97000 * 119.99859 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58569 * 173.64440 * 25 7 6 42 42 H 1.08995 * 109.58682 * 293.92579 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 1.2485 5 6 3.5707 -0.6950 1.2662 6 6 4.1050 -1.4318 0.0286 7 7 3.5046 -0.8293 -1.1695 8 6 4.2812 -0.3866 -2.1781 9 8 3.7794 0.1908 -3.1233 10 7 5.6138 -0.5840 -2.1392 11 6 6.4085 -0.2208 -3.2355 12 6 5.9507 0.3556 -4.4311 13 6 7.0224 0.5599 -5.2303 14 7 8.1177 0.1234 -4.5736 15 6 9.4929 0.1548 -5.0775 16 6 10.3700 0.8916 -4.0985 17 1 9.9456 1.2965 -3.1917 18 6 11.7144 1.0499 -4.3609 19 7 12.2313 0.5573 -5.4653 20 14 12.8018 1.9627 -3.1469 21 1 11.9841 2.4146 -1.9926 22 1 13.8773 1.0577 -2.6681 23 1 13.4082 3.1421 -3.8153 24 7 7.7104 -0.3591 -3.3232 25 6 2.0413 -0.7239 -1.2495 26 1 -0.3634 -1.0277 0.0015 27 1 -0.3634 0.5151 0.8892 28 1 -0.3633 0.5125 -0.8908 29 1 1.6580 -0.2244 2.1389 30 1 1.6966 -1.7572 1.2355 31 1 3.9158 0.3389 1.2542 32 1 3.9333 -1.1896 2.1673 33 1 3.8338 -2.4862 0.0823 34 1 5.1896 -1.3333 -0.0173 35 1 6.0231 -0.9775 -1.3527 36 1 4.9251 0.5968 -4.6687 37 1 7.0048 0.9936 -6.2192 38 1 9.8592 -0.8649 -5.1977 39 1 9.5154 0.6646 -6.0407 40 1 13.1771 0.6683 -5.6497 41 1 1.7638 -0.1581 -2.1388 42 1 1.6054 -1.7216 -1.3004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173340500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:07 Heat of formation + Delta-G solvation = 50.706342 kcal Electronic energy + Delta-G solvation = -23091.652604 eV Core-core repulsion = 19687.562275 eV Total energy + Delta-G solvation = -3404.090328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88358 -39.95015 -37.90922 -34.84956 -33.99868 -33.16482 -32.06200 -30.81515 -29.25465 -27.21159 -26.62729 -25.54467 -23.02044 -22.60920 -21.50033 -20.53817 -19.99976 -19.11421 -17.96632 -16.64922 -16.53662 -15.78503 -15.68867 -15.14032 -14.82591 -14.75412 -14.33402 -14.07676 -14.01055 -13.64941 -13.32422 -12.92861 -12.73330 -12.39369 -12.31257 -12.16768 -12.07967 -11.75549 -11.43785 -11.15033 -11.03713 -10.99214 -10.85596 -10.66982 -10.38771 -10.24354 -10.01722 -9.62947 -9.44632 -8.80503 -8.61761 -8.06149 -7.37192 -6.22648 -4.27435 2.36694 2.69069 3.13127 3.23208 3.30637 3.36593 3.45017 3.86244 4.09613 4.33662 4.40867 4.46295 4.52475 4.67466 4.92709 5.08204 5.12471 5.14495 5.27671 5.36432 5.41810 5.46515 5.51977 5.57273 5.66667 5.77359 5.80749 5.86047 5.87830 6.07827 6.20616 6.38734 6.57850 6.68308 6.86742 7.00659 7.11714 7.53053 7.71693 7.82676 7.97372 8.09921 8.61002 8.69691 8.83551 9.38097 10.86054 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.003057 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.423242 B = 9157.696224 C = 9834.370324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.108 3.892 7 N -0.628 5.628 8 C 0.717 3.283 9 O -0.567 6.567 10 N -0.644 5.644 11 C 0.275 3.725 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.321 5.321 15 C 0.258 3.742 16 C -0.527 4.527 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.308 5.308 25 C 0.135 3.865 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.405 0.595 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.782 -4.025 11.791 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.016 4.016 7 N -0.366 5.366 8 C 0.418 3.582 9 O -0.442 6.442 10 N -0.296 5.296 11 C 0.021 3.979 12 C -0.318 4.318 13 C -0.099 4.099 14 N -0.103 5.103 15 C 0.141 3.859 16 C -0.565 4.565 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.140 5.140 25 C 0.012 3.988 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.242 0.758 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.788 -4.036 11.517 23.248 hybrid contribution 0.340 0.520 0.658 0.905 sum -19.448 -3.516 12.175 23.213 Atomic orbital electron populations 1.21756 0.94356 1.02002 1.02128 1.21542 0.95902 1.00407 0.95002 0.90605 1.21578 0.95052 1.00816 0.97665 1.22006 0.96319 1.01612 0.97495 1.21780 0.97842 0.97316 0.84614 1.47213 1.06565 1.64846 1.17979 1.15523 0.80473 0.79423 0.82802 1.90849 1.72859 1.46149 1.34364 1.41602 1.04993 1.65315 1.17729 1.18812 0.89723 1.00817 0.88528 1.21494 1.00655 1.15270 0.94335 1.22543 0.86799 1.01078 0.99454 1.49047 1.08496 1.43513 1.09238 1.19731 0.71865 0.99114 0.95210 1.21309 0.93053 1.35713 1.06421 0.91264 1.24951 0.97746 0.95668 0.95784 1.69932 1.13665 1.45242 1.24575 0.86280 0.80048 0.79278 0.80940 1.19575 1.20714 1.20775 1.77316 1.08591 1.25557 1.02494 1.21537 0.77579 1.00553 0.99088 0.92499 0.92386 0.92250 0.91666 0.91697 0.91228 0.90545 0.90972 0.90328 0.75762 0.82261 0.81536 0.93756 0.92546 0.92410 0.88611 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.15 0.34 -0.54 16 2 C -0.11 -0.84 2.87 -90.50 -0.26 -1.10 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -0.73 5.16 -26.68 -0.14 -0.86 16 5 C -0.14 -0.95 6.10 -26.38 -0.16 -1.11 16 6 C 0.11 0.90 6.42 -3.48 -0.02 0.88 16 7 N -0.63 -7.19 2.97 -178.23 -0.53 -7.71 16 8 C 0.72 11.33 8.26 -86.93 -0.72 10.62 16 9 O -0.57 -10.67 12.91 5.29 0.07 -10.61 16 10 N -0.64 -10.69 5.36 -15.51 -0.08 -10.78 16 11 C 0.28 5.75 8.11 -154.36 -1.25 4.50 16 12 C -0.29 -5.90 9.61 -39.84 -0.38 -6.28 16 13 C 0.05 1.05 11.43 -17.24 -0.20 0.86 16 14 N -0.32 -7.62 3.67 -62.57 -0.23 -7.85 16 15 C 0.26 6.65 6.26 -5.20 -0.03 6.62 16 16 C -0.53 -14.80 9.24 -34.44 -0.32 -15.11 16 17 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 20 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 N -0.31 -7.27 12.42 31.44 0.39 -6.88 16 25 C 0.14 1.30 5.72 -3.71 -0.02 1.28 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.65 5.64 -51.93 -0.29 0.35 16 35 H 0.40 5.61 6.31 -40.82 -0.26 5.35 16 36 H 0.16 3.23 5.93 -52.48 -0.31 2.92 16 37 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16 38 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.10 1.09 6.99 -51.93 -0.36 0.73 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -32.80 341.99 -9.03 -41.83 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.26 Total: 3.81 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.26 Total: 1.34 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.29 Total: -57.99 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.80 -9.03 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173340500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.535 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds