Wall clock time and date at job start Tue Mar 31 2020 07:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.52571 * 2 1 4 4 C 1.53047 * 109.49374 * 120.07732 * 2 1 3 5 5 C 1.53043 * 109.53641 * 181.31900 * 4 2 1 6 6 C 1.53625 * 109.24068 * 298.50969 * 5 4 2 7 7 N 1.46934 * 108.54663 * 54.85687 * 6 5 4 8 8 C 1.34771 * 120.63008 * 126.36442 * 7 6 5 9 9 O 1.21591 * 119.99556 * 184.94178 * 8 7 6 10 10 N 1.34773 * 120.00355 * 4.94710 * 8 7 6 11 11 C 1.40193 * 120.00057 * 174.86493 * 10 8 7 12 12 C 1.40400 * 125.97451 * 0.02562 * 11 10 8 13 13 C 1.35237 * 107.86709 * 179.73860 * 12 11 10 14 14 N 1.34963 * 107.86282 * 0.37040 * 13 12 11 15 15 C 1.46493 * 125.98030 * 179.89715 * 14 13 12 16 16 C 1.50696 * 109.47375 * 124.71513 * 15 14 13 17 17 H 1.07994 * 120.00287 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99987 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47182 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47462 * 119.99428 * 20 18 16 23 23 H 1.48503 * 109.46958 * 239.99819 * 20 18 16 24 24 N 1.31211 * 125.97094 * 179.97438 * 11 10 8 25 25 C 1.46926 * 118.73471 * 306.09718 * 7 6 5 26 26 H 1.09003 * 109.47524 * 180.08304 * 1 2 3 27 27 H 1.09003 * 109.47560 * 300.08441 * 1 2 3 28 28 H 1.09004 * 109.47079 * 60.08443 * 1 2 3 29 29 H 1.08997 * 109.45855 * 301.33433 * 4 2 1 30 30 H 1.08996 * 109.46129 * 61.30002 * 4 2 1 31 31 H 1.09001 * 109.50045 * 58.58248 * 5 4 2 32 32 H 1.09000 * 109.49739 * 178.68271 * 5 4 2 33 33 H 1.09000 * 109.74286 * 295.11986 * 6 5 4 34 34 H 1.09000 * 109.66974 * 174.54725 * 6 5 4 35 35 H 0.97004 * 119.99915 * 354.86485 * 10 8 7 36 36 H 1.08003 * 126.06527 * 359.97438 * 12 11 10 37 37 H 1.08003 * 126.07275 * 180.26674 * 13 12 11 38 38 H 1.09008 * 109.47120 * 244.71821 * 15 14 13 39 39 H 1.09000 * 109.47413 * 4.71143 * 15 14 13 40 40 H 0.97000 * 119.99859 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58569 * 173.64440 * 25 7 6 42 42 H 1.08995 * 109.58682 * 293.92579 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 1.2485 5 6 3.5707 -0.6950 1.2662 6 6 4.1050 -1.4318 0.0286 7 7 3.5046 -0.8293 -1.1695 8 6 4.2812 -0.3866 -2.1781 9 8 3.7794 0.1908 -3.1233 10 7 5.6138 -0.5840 -2.1392 11 6 6.4085 -0.2208 -3.2355 12 6 5.9507 0.3556 -4.4311 13 6 7.0224 0.5599 -5.2303 14 7 8.1177 0.1234 -4.5736 15 6 9.4929 0.1548 -5.0775 16 6 10.3700 0.8916 -4.0985 17 1 9.9456 1.2965 -3.1917 18 6 11.7144 1.0499 -4.3609 19 7 12.2313 0.5573 -5.4653 20 14 12.8018 1.9627 -3.1469 21 1 11.9841 2.4146 -1.9926 22 1 13.8773 1.0577 -2.6681 23 1 13.4082 3.1421 -3.8153 24 7 7.7104 -0.3591 -3.3232 25 6 2.0413 -0.7239 -1.2495 26 1 -0.3634 -1.0277 0.0015 27 1 -0.3634 0.5151 0.8892 28 1 -0.3633 0.5125 -0.8908 29 1 1.6580 -0.2244 2.1389 30 1 1.6966 -1.7572 1.2355 31 1 3.9158 0.3389 1.2542 32 1 3.9333 -1.1896 2.1673 33 1 3.8338 -2.4862 0.0823 34 1 5.1896 -1.3333 -0.0173 35 1 6.0231 -0.9775 -1.3527 36 1 4.9251 0.5968 -4.6687 37 1 7.0048 0.9936 -6.2192 38 1 9.8592 -0.8649 -5.1977 39 1 9.5154 0.6646 -6.0407 40 1 13.1771 0.6683 -5.6497 41 1 1.7638 -0.1581 -2.1388 42 1 1.6054 -1.7216 -1.3004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173340500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:06 Heat of formation + Delta-G solvation = 31.303329 kcal Electronic energy + Delta-G solvation = -23092.493982 eV Core-core repulsion = 19687.562275 eV Total energy + Delta-G solvation = -3404.931706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.30956 -41.27606 -38.86205 -36.30985 -35.44381 -34.61759 -32.75652 -32.60991 -30.94281 -28.69795 -27.63454 -26.56120 -24.87917 -23.28591 -22.81302 -21.99854 -21.07949 -20.32273 -19.12265 -18.68526 -18.08915 -17.24812 -16.83786 -16.46530 -16.01269 -15.85071 -15.58529 -15.44128 -14.97190 -14.60419 -14.52563 -14.25173 -14.03613 -13.83345 -13.67039 -13.46270 -12.94114 -12.92591 -12.73351 -12.69102 -12.31457 -12.07644 -12.02036 -11.80648 -11.64171 -11.59804 -11.39524 -11.27155 -11.03104 -10.72229 -9.85535 -9.65783 -9.03890 -8.32883 -6.47016 1.04402 1.12677 1.37216 1.38415 1.51720 1.67195 2.03429 2.35205 2.37082 2.81863 2.98583 3.75026 3.83050 3.91769 3.97315 4.04890 4.24115 4.31730 4.42373 4.52070 4.66701 4.74403 4.81542 4.83013 4.89254 4.90635 4.94071 4.95218 5.01532 5.10211 5.16724 5.21284 5.29284 5.35127 5.50002 5.56488 5.59026 5.72835 5.84730 5.95169 6.28883 6.58478 6.67413 7.09486 7.22945 7.36378 8.74811 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.003057 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.423242 B = 9157.696224 C = 9834.370324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.055 0.945 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.100 3.900 7 N -0.618 5.618 8 C 0.711 3.289 9 O -0.602 6.602 10 N -0.638 5.638 11 C 0.283 3.717 12 C -0.293 4.293 13 C 0.058 3.942 14 N -0.345 5.345 15 C 0.272 3.728 16 C -0.547 4.547 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.270 1.270 24 N -0.347 5.347 25 C 0.131 3.869 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.165 0.835 37 H 0.202 0.798 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.273 0.727 41 H 0.072 0.928 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.766 -4.319 13.566 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.022 4.022 7 N -0.354 5.354 8 C 0.412 3.588 9 O -0.480 6.480 10 N -0.292 5.292 11 C 0.027 3.973 12 C -0.325 4.325 13 C -0.090 4.090 14 N -0.127 5.127 15 C 0.154 3.846 16 C -0.585 4.585 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.559 5.559 20 Si 0.797 3.203 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.178 5.178 25 C 0.009 3.991 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.257 0.743 36 H 0.182 0.818 37 H 0.219 0.781 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.812 -4.356 13.341 25.102 hybrid contribution 0.501 0.573 0.143 0.775 sum -20.311 -3.783 13.484 24.671 Atomic orbital electron populations 1.21730 0.92918 1.02883 1.02311 1.21490 0.97015 0.99132 0.94719 0.92639 1.21581 0.94416 1.01594 0.97142 1.21999 0.96856 1.00676 0.97514 1.22093 0.97814 0.98592 0.83730 1.47349 1.07012 1.63471 1.17613 1.15745 0.80210 0.79416 0.83444 1.90812 1.73308 1.47783 1.36108 1.41621 1.05169 1.65292 1.17146 1.19115 0.89338 0.99229 0.89587 1.21658 1.00845 1.15501 0.94469 1.23144 0.85683 0.99667 1.00544 1.48832 1.08355 1.45455 1.10029 1.19347 0.72917 0.97428 0.94934 1.21427 0.94073 1.36562 1.06412 0.93052 1.25746 0.98806 0.96210 0.97468 1.70003 1.14344 1.45781 1.25821 0.85289 0.78126 0.78402 0.78523 1.19970 1.19750 1.19503 1.77236 1.09975 1.27511 1.03114 1.21737 0.76435 1.01664 0.99311 0.91239 0.91451 0.92882 0.90520 0.90176 0.92851 0.88269 0.88638 0.90464 0.74338 0.81781 0.78111 0.95987 0.92305 0.91827 0.90898 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.20 71.98 0.66 -0.76 16 2 C -0.10 -1.43 2.87 -10.71 -0.03 -1.46 16 3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -1.08 5.16 30.62 0.16 -0.93 16 5 C -0.13 -1.52 6.10 30.82 0.19 -1.33 16 6 C 0.10 1.45 6.42 86.51 0.56 2.01 16 7 N -0.62 -13.48 2.97 -836.05 -2.48 -15.96 16 8 C 0.71 22.37 8.26 179.06 1.48 23.85 16 9 O -0.60 -22.94 12.91 -4.00 -0.05 -22.99 16 10 N -0.64 -21.16 5.36 -321.24 -1.72 -22.88 16 11 C 0.28 11.93 8.11 133.31 1.08 13.01 16 12 C -0.29 -12.14 9.61 22.10 0.21 -11.93 16 13 C 0.06 2.38 11.43 83.52 0.96 3.34 16 14 N -0.34 -16.66 3.67 -351.86 -1.29 -17.95 16 15 C 0.27 14.37 6.26 85.63 0.54 14.91 16 16 C -0.55 -31.27 9.24 25.60 0.24 -31.03 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 18 C 0.02 1.00 5.46 84.66 0.46 1.46 16 19 N -0.92 -52.52 13.29 21.45 0.28 -52.24 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 N -0.35 -16.69 12.42 -54.44 -0.68 -17.37 16 25 C 0.13 2.37 5.72 86.36 0.49 2.86 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.15 5.64 -2.39 -0.01 1.14 16 35 H 0.42 11.41 6.31 -92.71 -0.58 10.83 16 36 H 0.16 6.67 5.93 -2.91 -0.02 6.66 16 37 H 0.20 6.51 8.06 -2.91 -0.02 6.49 16 38 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 3.03 8.07 -2.39 -0.02 3.01 16 40 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.07 1.68 6.99 -2.39 -0.02 1.66 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.47 341.99 3.52 -67.95 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.44 Total: 21.44 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.99 Total: 14.00 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -5.88 Total: -126.39 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.47 3.52 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173340500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.257 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds