Wall clock time and date at job start Tue Mar 31 2020 06:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53002 * 109.47122 * 239.99734 * 2 1 3 5 5 N 1.46504 * 109.47161 * 119.99848 * 2 1 3 6 6 C 1.34811 * 126.59398 * 74.99652 * 5 2 1 7 7 C 1.36604 * 106.83728 * 180.02562 * 6 5 2 8 8 C 1.47519 * 125.76568 * 179.97438 * 7 6 5 9 9 O 1.21596 * 120.00701 * 354.59476 * 8 7 6 10 10 N 1.34780 * 119.99670 * 174.60174 * 8 7 6 11 11 C 1.46502 * 120.00280 * 185.06089 * 10 8 7 12 12 C 1.52991 * 109.47279 * 174.97155 * 11 10 8 13 13 C 1.50700 * 115.55333 * 306.81522 * 12 11 10 14 14 H 1.07996 * 120.00424 * 144.22937 * 13 12 11 15 15 C 1.37875 * 119.99796 * 324.23629 * 13 12 11 16 16 N 1.31521 * 120.00236 * 349.79385 * 15 13 12 17 17 Si 1.86800 * 120.00033 * 169.79204 * 15 13 12 18 18 H 1.48499 * 109.47234 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46824 * 120.00068 * 17 15 13 20 20 H 1.48500 * 109.47193 * 239.99929 * 17 15 13 21 21 C 1.53010 * 117.49760 * 161.14702 * 12 11 10 22 22 C 1.53001 * 117.50149 * 92.49042 * 12 11 10 23 23 N 1.34400 * 108.46023 * 0.24062 * 7 6 5 24 24 N 1.28772 * 109.51917 * 359.59009 * 23 7 6 25 25 H 1.08997 * 109.47334 * 300.00358 * 1 2 3 26 26 H 1.09003 * 109.47487 * 60.00371 * 1 2 3 27 27 H 1.09008 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46864 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46740 * 299.99631 * 3 2 1 30 30 H 1.08997 * 109.47290 * 59.99615 * 3 2 1 31 31 H 1.09008 * 109.46854 * 299.99953 * 4 2 1 32 32 H 1.08991 * 109.46859 * 59.99996 * 4 2 1 33 33 H 1.08994 * 109.46793 * 180.02562 * 4 2 1 34 34 H 1.07998 * 126.58489 * 0.02562 * 6 5 2 35 35 H 0.96999 * 120.00209 * 5.05364 * 10 8 7 36 36 H 1.09008 * 109.46814 * 294.97193 * 11 10 8 37 37 H 1.08998 * 109.46976 * 54.96799 * 11 10 8 38 38 H 0.96992 * 120.00375 * 185.03000 * 16 15 13 39 39 H 1.08993 * 117.49900 * 0.02562 * 21 12 11 40 40 H 1.08994 * 117.49635 * 145.02039 * 21 12 11 41 41 H 1.08998 * 117.49834 * 214.98364 * 22 12 11 42 42 H 1.08999 * 117.49615 * 359.96642 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0221 -2.0215 1.4106 7 6 2.5628 -2.2213 2.6490 8 6 2.7636 -3.5291 3.3014 9 8 2.3475 -4.5424 2.7734 10 7 3.4083 -3.6009 4.4828 11 6 3.7059 -4.9066 5.0769 12 6 4.5455 -4.7123 6.3410 13 6 5.7944 -3.8863 6.1713 14 1 6.1198 -3.2299 6.9648 15 6 6.5217 -3.9683 5.0028 16 7 6.2470 -4.9053 4.1217 17 14 7.8971 -2.7487 4.6711 18 1 8.0045 -1.8018 5.8100 19 1 9.1798 -3.4801 4.5134 20 1 7.6008 -1.9949 3.4263 21 6 4.5941 -5.8690 7.3415 22 6 3.8014 -4.6023 7.6734 23 7 2.8754 -1.0247 3.1750 24 7 2.5712 -0.0942 2.3384 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1391 33 1 3.1299 -0.7217 -1.2489 34 1 1.6659 -2.7836 0.7333 35 1 3.6755 -2.7880 4.9398 36 1 2.7736 -5.4098 5.3337 37 1 4.2611 -5.5132 4.3616 38 1 6.8042 -5.0093 3.3346 39 1 4.0283 -6.7684 7.0988 40 1 5.5293 -6.0321 7.8770 41 1 4.2154 -3.9326 8.4272 42 1 2.7137 -4.6677 7.6492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431135347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:33 Heat of formation + Delta-G solvation = 57.204118 kcal Electronic energy + Delta-G solvation = -23699.038978 eV Core-core repulsion = 20295.230415 eV Total energy + Delta-G solvation = -3403.808564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.27380 -40.29612 -38.47206 -38.21964 -34.82336 -34.12677 -32.98097 -31.86939 -28.57602 -28.41756 -27.94478 -27.25019 -24.69614 -24.01026 -22.92104 -21.72061 -21.12738 -20.57489 -18.85031 -17.97174 -17.18516 -17.10878 -16.74005 -16.65023 -15.86709 -15.67154 -15.49973 -15.12337 -14.96790 -14.72933 -14.27962 -13.66529 -13.55266 -13.46644 -13.34591 -13.29589 -13.18131 -12.93626 -12.78810 -12.63799 -12.45425 -12.32685 -12.29811 -12.02906 -11.96207 -11.50474 -11.25353 -11.08752 -10.96466 -10.61538 -10.35886 -10.09842 -9.64504 -8.03780 -6.17080 0.17503 0.70680 1.07094 1.35659 1.42248 1.50125 2.29300 2.38932 2.51933 3.04644 3.24953 3.30300 3.64924 3.66360 3.76467 3.83109 3.99011 4.20176 4.27878 4.53430 4.55802 4.56965 4.60259 4.66712 4.74822 4.76856 4.78589 4.80684 4.83354 4.99246 5.06076 5.14753 5.19031 5.25864 5.31511 5.54037 5.57633 5.61209 5.78199 5.93543 6.38376 6.69585 6.85183 7.02274 7.37391 7.45699 8.92019 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.004528 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.645545 B = 6182.843693 C = 6895.618208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.147 4.147 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.103 3.897 7 C -0.118 4.118 8 C 0.590 3.410 9 O -0.587 6.587 10 N -0.673 5.673 11 C 0.173 3.827 12 C 0.006 3.994 13 C -0.504 4.504 14 H 0.056 0.944 15 C 0.042 3.958 16 N -0.891 5.891 17 Si 0.938 3.062 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.292 1.292 21 C -0.191 4.191 22 C -0.188 4.188 23 N -0.232 5.232 24 N -0.085 5.085 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.228 0.772 35 H 0.405 0.595 36 H 0.031 0.969 37 H 0.080 0.920 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 10.697 -12.700 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.204 4.204 4 C -0.219 4.219 5 N -0.125 5.125 6 C -0.055 4.055 7 C -0.258 4.258 8 C 0.375 3.625 9 O -0.468 6.468 10 N -0.319 5.319 11 C 0.050 3.950 12 C 0.006 3.994 13 C -0.541 4.541 14 H 0.074 0.926 15 C -0.159 4.159 16 N -0.528 5.528 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.218 1.218 21 C -0.230 4.230 22 C -0.225 4.225 23 N -0.105 5.105 24 N -0.064 5.064 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.240 0.760 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.673 11.317 -12.611 20.576 hybrid contribution 0.995 -0.260 -0.165 1.041 sum -10.678 11.057 -12.775 19.987 Atomic orbital electron populations 1.22303 0.90063 1.04164 1.04852 1.21651 0.96534 0.94311 0.79924 1.22025 1.01590 0.92084 1.04749 1.22355 1.01858 1.01931 0.95784 1.51194 1.40773 1.04893 1.15635 1.23519 0.97156 0.87777 0.97044 1.21556 1.13902 0.93041 0.97271 1.17065 0.78323 0.86151 0.80994 1.90683 1.53933 1.36332 1.65873 1.45563 1.55058 1.10808 1.20439 1.20773 0.94859 0.83780 0.95586 1.19228 0.95366 0.98153 0.86693 1.20690 1.08382 1.24233 1.00803 0.92598 1.25442 0.98785 0.96120 0.95598 1.69983 1.38632 1.32116 1.12104 0.85806 0.79798 0.80010 0.77901 1.18971 1.20641 1.21843 1.22915 1.00909 0.92322 1.06823 1.22967 0.97361 1.00968 1.01184 1.74655 1.13627 0.98554 1.23661 1.81797 1.16695 1.17220 0.90716 0.92578 0.86460 0.91134 0.92879 0.86741 0.91947 0.90534 0.86233 0.92666 0.75573 0.75975 0.95114 0.90244 0.93231 0.90262 0.90548 0.89936 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.74 71.98 0.63 -1.00 16 2 C 0.16 2.34 1.25 3.60 0.00 2.34 16 3 C -0.15 -2.02 8.11 71.98 0.58 -1.44 16 4 C -0.16 -1.73 8.30 71.98 0.60 -1.13 16 5 N -0.34 -8.60 3.44 -306.89 -1.06 -9.66 16 6 C 0.10 2.96 10.43 83.85 0.87 3.84 16 7 C -0.12 -4.53 6.99 40.82 0.29 -4.24 16 8 C 0.59 26.70 7.81 86.69 0.68 27.37 16 9 O -0.59 -28.51 16.88 -4.02 -0.07 -28.57 16 10 N -0.67 -31.76 5.22 -466.28 -2.43 -34.19 16 11 C 0.17 8.58 4.75 86.38 0.41 8.99 16 12 C 0.01 0.30 1.96 -52.93 -0.10 0.20 16 13 C -0.50 -26.80 8.37 25.60 0.21 -26.59 16 14 H 0.06 2.98 7.83 -2.91 -0.02 2.96 16 15 C 0.04 2.29 5.14 84.65 0.44 2.72 16 16 N -0.89 -50.23 10.78 21.45 0.23 -50.00 16 17 Si 0.94 44.06 29.55 68.60 2.03 46.08 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 C -0.19 -8.41 9.96 30.62 0.30 -8.10 16 22 C -0.19 -7.80 9.92 30.62 0.30 -7.49 16 23 N -0.23 -9.14 12.05 -49.99 -0.60 -9.74 16 24 N -0.08 -2.84 12.91 37.02 0.48 -2.36 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 1.03 8.06 -2.39 -0.02 1.01 16 31 H 0.08 0.76 7.44 -2.38 -0.02 0.74 16 32 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.23 4.94 7.63 -2.91 -0.02 4.92 16 35 H 0.41 19.17 7.77 -92.71 -0.72 18.45 16 36 H 0.03 1.46 8.08 -2.38 -0.02 1.44 16 37 H 0.08 4.48 6.07 -2.39 -0.01 4.47 16 38 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 39 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.09 3.28 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -68.68 354.66 4.09 -64.59 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.30 Total: 28.38 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.22 Total: -4.53 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.38 Total: -105.95 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.07 Total: -28.57 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.68 4.09 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431135347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.792 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds