Wall clock time and date at job start Tue Mar 31 2020 07:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70092 * 2 1 4 4 C 1.53194 * 109.58737 * 239.64080 * 2 1 3 5 5 C 1.53037 * 109.31205 * 185.57679 * 4 2 1 6 6 H 1.09007 * 109.46011 * 181.38484 * 5 4 2 7 7 N 1.46500 * 109.46269 * 301.35639 * 5 4 2 8 8 C 1.34775 * 119.99906 * 204.99516 * 7 5 4 9 9 O 1.21595 * 120.00439 * 0.02562 * 8 7 5 10 10 C 1.47437 * 119.99662 * 180.02562 * 8 7 5 11 11 C 1.41289 * 126.41442 * 0.02925 * 10 8 7 12 12 N 1.30446 * 108.02430 * 179.97438 * 11 10 8 13 13 N 1.39936 * 108.89425 * 0.02562 * 12 11 10 14 14 C 1.46498 * 125.75420 * 179.97438 * 13 12 11 15 15 C 1.34264 * 108.49369 * 359.75093 * 13 12 11 16 16 C 1.53349 * 109.60802 * 61.37779 * 5 4 2 17 17 C 1.53193 * 109.14573 * 298.70956 * 16 5 4 18 18 N 1.46920 * 108.89428 * 54.58008 * 17 16 5 19 19 C 1.36936 * 120.63523 * 126.34140 * 18 17 16 20 20 H 1.08003 * 120.00492 * 209.05146 * 19 18 17 21 21 C 1.38815 * 119.99867 * 29.04810 * 19 18 17 22 22 N 1.31620 * 120.00010 * 15.03971 * 21 19 18 23 23 Si 1.86798 * 120.00070 * 195.03905 * 21 19 18 24 24 H 1.48496 * 109.47137 * 60.00020 * 23 21 19 25 25 H 1.48500 * 109.47081 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47124 * 299.99963 * 23 21 19 27 27 H 1.08997 * 109.46874 * 299.65028 * 1 2 3 28 28 H 1.09009 * 109.47020 * 59.64497 * 1 2 3 29 29 H 1.08999 * 109.47431 * 179.64614 * 1 2 3 30 30 H 1.09002 * 109.49760 * 305.53463 * 4 2 1 31 31 H 1.09003 * 109.49519 * 65.62740 * 4 2 1 32 32 H 0.96998 * 119.99684 * 25.00412 * 7 5 4 33 33 H 1.07997 * 125.98808 * 0.02562 * 11 10 8 34 34 H 1.08998 * 109.47332 * 89.97694 * 14 13 12 35 35 H 1.09003 * 109.47374 * 209.97674 * 14 13 12 36 36 H 1.08997 * 109.47312 * 329.97829 * 14 13 12 37 37 H 1.07994 * 126.29150 * 180.24057 * 15 13 12 38 38 H 1.09002 * 109.68888 * 178.74399 * 16 5 4 39 39 H 1.08997 * 109.47331 * 58.54561 * 16 5 4 40 40 H 1.08995 * 109.58974 * 294.71727 * 17 16 5 41 41 H 1.09002 * 109.58422 * 174.43748 * 17 16 5 42 42 H 0.96996 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 3.9378 -1.3449 -2.0668 7 7 4.1570 0.4897 -1.0747 8 6 5.4212 0.7003 -1.4919 9 8 6.0723 -0.2198 -1.9479 10 6 6.0146 2.0465 -1.3953 11 6 5.3852 3.2064 -0.8905 12 7 6.2337 4.1939 -0.9718 13 7 7.4286 3.7202 -1.5249 14 6 8.6293 4.5196 -1.7812 15 6 7.2910 2.4086 -1.7765 16 6 3.9595 -1.6674 0.0655 17 6 3.4650 -0.9469 1.3237 18 7 2.0226 -0.6995 1.1945 19 6 1.1537 -1.1126 2.1690 20 1 0.1361 -1.3677 1.9124 21 6 1.5809 -1.2035 3.4866 22 7 2.7036 -0.6243 3.8559 23 14 0.5623 -2.1478 4.7357 24 1 0.4338 -3.5621 4.3019 25 1 1.2304 -2.0947 6.0609 26 1 -0.7872 -1.5367 4.8375 27 1 -0.3633 0.5084 0.8931 28 1 -0.3633 0.5194 -0.8869 29 1 -0.3634 -1.0276 -0.0063 30 1 1.6029 -1.7254 -1.2913 31 1 1.7660 -0.1669 -2.1368 32 1 3.6376 1.2238 -0.7112 33 1 4.3784 3.2649 -0.5042 34 1 9.2749 4.4972 -0.9033 35 1 9.1646 4.1073 -2.6365 36 1 8.3417 5.5491 -1.9944 37 1 8.0404 1.7571 -2.2012 38 1 5.0437 -1.7715 0.1082 39 1 3.5008 -2.6544 0.0075 40 1 3.9903 0.0021 1.4317 41 1 3.6521 -1.5696 2.1986 42 1 3.0020 -0.6875 4.7767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947039905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:55 Heat of formation + Delta-G solvation = 62.803352 kcal Electronic energy + Delta-G solvation = -24018.094028 eV Core-core repulsion = 20614.528265 eV Total energy + Delta-G solvation = -3403.565763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34289 -39.32580 -37.40500 -34.19780 -33.53702 -32.27637 -31.21828 -30.28142 -29.47822 -27.15730 -26.30682 -24.91378 -23.02462 -21.90944 -21.11400 -20.55542 -20.07249 -18.50300 -17.91957 -16.33865 -15.81506 -15.73878 -15.29604 -14.98577 -14.59444 -14.45386 -13.92115 -13.72569 -13.64223 -13.16044 -13.03600 -12.89300 -12.76674 -12.56453 -12.31930 -11.77833 -11.38597 -11.15393 -11.07405 -10.95123 -10.65489 -10.57315 -10.37541 -10.09165 -10.03750 -9.65503 -9.61780 -9.50273 -9.24675 -8.77279 -8.43752 -8.37501 -6.59288 -5.73776 -3.17910 1.55191 2.23479 2.26231 3.40177 3.46540 3.47188 3.67074 3.79053 4.34827 4.51843 4.69729 4.84429 4.91119 5.10536 5.22074 5.36823 5.40425 5.42458 5.46934 5.68428 5.73443 5.78782 6.06393 6.16147 6.30407 6.35434 6.38720 6.44235 6.49303 6.63469 6.71307 6.71804 6.85430 7.01255 7.08787 7.12597 7.45078 7.47636 7.75713 7.85271 8.02211 8.50257 8.68965 9.26016 9.89760 10.46308 11.34092 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.004127 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.447540 B = 6783.710083 C = 7200.370881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.020 0.980 4 C -0.139 4.139 5 C 0.156 3.844 6 H 0.072 0.928 7 N -0.708 5.708 8 C 0.593 3.407 9 O -0.561 6.561 10 C -0.286 4.286 11 C 0.086 3.914 12 N -0.301 5.301 13 N -0.369 5.369 14 C 0.099 3.901 15 C 0.122 3.878 16 C -0.153 4.153 17 C 0.175 3.825 18 N -0.587 5.587 19 C -0.251 4.251 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.399 0.601 33 H 0.191 0.809 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.187 0.813 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.085 0.915 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 7.695 -12.322 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.037 0.963 4 C -0.178 4.178 5 C 0.052 3.948 6 H 0.090 0.910 7 N -0.359 5.359 8 C 0.381 3.619 9 O -0.441 6.441 10 C -0.300 4.300 11 C -0.102 4.102 12 N -0.121 5.121 13 N -0.149 5.149 14 C -0.042 4.042 15 C -0.029 4.029 16 C -0.194 4.194 17 C 0.049 3.951 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.210 1.210 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.207 0.793 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.204 0.796 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.454 8.390 -12.264 17.096 hybrid contribution -0.739 -0.957 0.867 1.488 sum 7.714 7.433 -11.397 15.641 Atomic orbital electron populations 1.21807 0.95920 1.01466 1.00268 1.20381 0.93083 0.93115 0.87283 0.96284 1.22363 0.94049 1.02263 0.99162 1.20918 0.92857 0.82324 0.98707 0.90984 1.45900 1.13817 1.12519 1.63617 1.17178 0.81461 0.86233 0.77078 1.90721 1.61436 1.44315 1.47652 1.20387 0.96202 0.95786 1.17662 1.24133 0.99576 0.89623 0.96850 1.77177 0.91802 1.23302 1.19770 1.48400 1.12174 1.06984 1.47299 1.21943 0.83056 0.96711 1.02533 1.22927 0.97736 0.85375 0.96883 1.22606 0.99894 0.99319 0.97533 1.20716 0.83018 0.97185 0.94152 1.44126 1.03030 1.64990 1.18874 1.19131 0.94811 1.37850 0.86249 0.91346 1.25067 0.97780 0.99739 0.96941 1.70005 1.23320 1.44532 1.16851 0.86413 0.79617 0.80213 0.80750 1.21107 1.21757 1.20981 0.91955 0.94324 0.92724 0.90724 0.92605 0.76520 0.79257 0.90337 0.89181 0.88994 0.79625 0.92762 0.91948 0.96352 0.89636 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.25 3.20 -67.60 -0.22 3.03 16 3 H 0.02 0.37 6.64 -51.93 -0.34 0.03 16 4 C -0.14 -2.31 5.07 -26.61 -0.14 -2.44 16 5 C 0.16 2.74 2.78 -67.73 -0.19 2.55 16 6 H 0.07 1.27 7.58 -51.92 -0.39 0.88 16 7 N -0.71 -11.71 4.25 -54.68 -0.23 -11.94 16 8 C 0.59 10.11 7.78 -12.51 -0.10 10.02 16 9 O -0.56 -11.07 16.56 5.28 0.09 -10.98 16 10 C -0.29 -4.16 6.13 -105.06 -0.64 -4.81 16 11 C 0.09 1.17 11.50 -16.98 -0.20 0.98 16 12 N -0.30 -4.13 12.50 30.86 0.39 -3.75 16 13 N -0.37 -4.15 3.98 -67.60 -0.27 -4.42 16 14 C 0.10 0.60 11.44 59.85 0.68 1.29 16 15 C 0.12 1.48 11.30 -16.56 -0.19 1.29 16 16 C -0.15 -3.08 5.80 -26.45 -0.15 -3.24 16 17 C 0.17 4.13 5.02 -3.71 -0.02 4.11 16 18 N -0.59 -13.91 2.99 -164.78 -0.49 -14.40 16 19 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 20 H 0.07 1.75 6.21 -52.48 -0.33 1.42 16 21 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 22 N -0.90 -25.88 11.14 55.49 0.62 -25.26 16 23 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 28 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.05 0.99 7.45 -51.93 -0.39 0.61 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.40 6.21 5.82 -40.82 -0.24 5.97 16 33 H 0.19 2.21 7.50 -52.49 -0.39 1.82 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 41 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -32.96 337.96 -7.04 -40.00 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.13 Total: 5.25 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.07 Total: 3.93 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.01 Total: -59.77 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.96 -7.04 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947039905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.806 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds