Wall clock time and date at job start Tue Mar 31 2020 07:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70092 * 2 1 4 4 C 1.53194 * 109.58737 * 239.64080 * 2 1 3 5 5 C 1.53037 * 109.31205 * 185.57679 * 4 2 1 6 6 H 1.09007 * 109.46011 * 181.38484 * 5 4 2 7 7 N 1.46500 * 109.46269 * 301.35639 * 5 4 2 8 8 C 1.34775 * 119.99906 * 204.99516 * 7 5 4 9 9 O 1.21595 * 120.00439 * 0.02562 * 8 7 5 10 10 C 1.47437 * 119.99662 * 180.02562 * 8 7 5 11 11 C 1.41289 * 126.41442 * 0.02925 * 10 8 7 12 12 N 1.30446 * 108.02430 * 179.97438 * 11 10 8 13 13 N 1.39936 * 108.89425 * 0.02562 * 12 11 10 14 14 C 1.46498 * 125.75420 * 179.97438 * 13 12 11 15 15 C 1.34264 * 108.49369 * 359.75093 * 13 12 11 16 16 C 1.53349 * 109.60802 * 61.37779 * 5 4 2 17 17 C 1.53193 * 109.14573 * 298.70956 * 16 5 4 18 18 N 1.46920 * 108.89428 * 54.58008 * 17 16 5 19 19 C 1.36936 * 120.63523 * 126.34140 * 18 17 16 20 20 H 1.08003 * 120.00492 * 209.05146 * 19 18 17 21 21 C 1.38815 * 119.99867 * 29.04810 * 19 18 17 22 22 N 1.31620 * 120.00010 * 15.03971 * 21 19 18 23 23 Si 1.86798 * 120.00070 * 195.03905 * 21 19 18 24 24 H 1.48496 * 109.47137 * 60.00020 * 23 21 19 25 25 H 1.48500 * 109.47081 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47124 * 299.99963 * 23 21 19 27 27 H 1.08997 * 109.46874 * 299.65028 * 1 2 3 28 28 H 1.09009 * 109.47020 * 59.64497 * 1 2 3 29 29 H 1.08999 * 109.47431 * 179.64614 * 1 2 3 30 30 H 1.09002 * 109.49760 * 305.53463 * 4 2 1 31 31 H 1.09003 * 109.49519 * 65.62740 * 4 2 1 32 32 H 0.96998 * 119.99684 * 25.00412 * 7 5 4 33 33 H 1.07997 * 125.98808 * 0.02562 * 11 10 8 34 34 H 1.08998 * 109.47332 * 89.97694 * 14 13 12 35 35 H 1.09003 * 109.47374 * 209.97674 * 14 13 12 36 36 H 1.08997 * 109.47312 * 329.97829 * 14 13 12 37 37 H 1.07994 * 126.29150 * 180.24057 * 15 13 12 38 38 H 1.09002 * 109.68888 * 178.74399 * 16 5 4 39 39 H 1.08997 * 109.47331 * 58.54561 * 16 5 4 40 40 H 1.08995 * 109.58974 * 294.71727 * 17 16 5 41 41 H 1.09002 * 109.58422 * 174.43748 * 17 16 5 42 42 H 0.96996 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 3.9378 -1.3449 -2.0668 7 7 4.1570 0.4897 -1.0747 8 6 5.4212 0.7003 -1.4919 9 8 6.0723 -0.2198 -1.9479 10 6 6.0146 2.0465 -1.3953 11 6 5.3852 3.2064 -0.8905 12 7 6.2337 4.1939 -0.9718 13 7 7.4286 3.7202 -1.5249 14 6 8.6293 4.5196 -1.7812 15 6 7.2910 2.4086 -1.7765 16 6 3.9595 -1.6674 0.0655 17 6 3.4650 -0.9469 1.3237 18 7 2.0226 -0.6995 1.1945 19 6 1.1537 -1.1126 2.1690 20 1 0.1361 -1.3677 1.9124 21 6 1.5809 -1.2035 3.4866 22 7 2.7036 -0.6243 3.8559 23 14 0.5623 -2.1478 4.7357 24 1 0.4338 -3.5621 4.3019 25 1 1.2304 -2.0947 6.0609 26 1 -0.7872 -1.5367 4.8375 27 1 -0.3633 0.5084 0.8931 28 1 -0.3633 0.5194 -0.8869 29 1 -0.3634 -1.0276 -0.0063 30 1 1.6029 -1.7254 -1.2913 31 1 1.7660 -0.1669 -2.1368 32 1 3.6376 1.2238 -0.7112 33 1 4.3784 3.2649 -0.5042 34 1 9.2749 4.4972 -0.9033 35 1 9.1646 4.1073 -2.6365 36 1 8.3417 5.5491 -1.9944 37 1 8.0404 1.7571 -2.2012 38 1 5.0437 -1.7715 0.1082 39 1 3.5008 -2.6544 0.0075 40 1 3.9903 0.0021 1.4317 41 1 3.6521 -1.5696 2.1986 42 1 3.0020 -0.6875 4.7767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947039905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:54 Heat of formation + Delta-G solvation = 40.883348 kcal Electronic energy + Delta-G solvation = -24019.044551 eV Core-core repulsion = 20614.528265 eV Total energy + Delta-G solvation = -3404.516285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33325 -40.73242 -38.94513 -35.81376 -34.45232 -33.97553 -32.76538 -31.62200 -30.91361 -28.16687 -27.69248 -26.73391 -24.25606 -23.57607 -22.30204 -21.92064 -21.26669 -20.09777 -19.00099 -18.17341 -17.09136 -16.82182 -16.64092 -16.47158 -15.95180 -15.57243 -15.52668 -15.42869 -14.97761 -14.64175 -14.32276 -14.11884 -13.81351 -13.48539 -13.43480 -13.29663 -13.13463 -12.78987 -12.61656 -12.46024 -12.27266 -12.15693 -12.07120 -11.93308 -11.65542 -11.35419 -10.94152 -10.84138 -10.57373 -10.46046 -10.01981 -9.59754 -8.54849 -7.78343 -5.23592 0.56500 1.15134 1.47574 1.49052 1.51498 1.57003 2.40776 2.55064 2.56772 3.36801 3.52743 3.67831 3.83101 3.97789 4.14834 4.16802 4.17760 4.27761 4.43464 4.50200 4.58592 4.64706 4.70418 4.72038 4.75913 4.84622 4.98602 5.03374 5.12177 5.17535 5.23538 5.37735 5.46951 5.58580 5.61381 5.70300 5.77080 5.83280 5.89835 6.48230 6.49068 6.72650 7.23588 7.37918 7.96778 8.47792 9.27397 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.004127 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.447540 B = 6783.710083 C = 7200.370881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.160 3.840 3 H 0.025 0.975 4 C -0.125 4.125 5 C 0.161 3.839 6 H 0.078 0.922 7 N -0.705 5.705 8 C 0.593 3.407 9 O -0.593 6.593 10 C -0.317 4.317 11 C 0.082 3.918 12 N -0.324 5.324 13 N -0.362 5.362 14 C 0.086 3.914 15 C 0.134 3.866 16 C -0.141 4.141 17 C 0.188 3.812 18 N -0.601 5.601 19 C -0.247 4.247 20 H 0.076 0.924 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.958 3.042 24 H -0.281 1.281 25 H -0.301 1.301 26 H -0.275 1.275 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.404 0.596 33 H 0.200 0.800 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.212 0.788 38 H 0.044 0.956 39 H 0.061 0.939 40 H -0.002 1.002 41 H 0.045 0.955 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 8.390 -14.299 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 H 0.042 0.958 4 C -0.164 4.164 5 C 0.057 3.943 6 H 0.096 0.904 7 N -0.355 5.355 8 C 0.382 3.618 9 O -0.475 6.475 10 C -0.332 4.332 11 C -0.105 4.105 12 N -0.145 5.145 13 N -0.140 5.140 14 C -0.053 4.053 15 C -0.019 4.019 16 C -0.182 4.182 17 C 0.062 3.938 18 N -0.325 5.325 19 C -0.378 4.378 20 H 0.094 0.906 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.787 3.213 24 H -0.208 1.208 25 H -0.227 1.227 26 H -0.200 1.200 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.240 0.760 33 H 0.216 0.784 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.118 0.882 37 H 0.228 0.772 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.016 0.984 41 H 0.064 0.936 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.259 9.126 -14.268 18.843 hybrid contribution -0.603 -1.093 1.418 1.889 sum 7.656 8.033 -12.850 16.978 Atomic orbital electron populations 1.21743 0.94531 1.01420 1.01105 1.20663 0.94305 0.93223 0.86411 0.95757 1.22235 0.92787 1.02472 0.98909 1.20809 0.93773 0.82541 0.97189 0.90363 1.45842 1.13982 1.12173 1.63553 1.17503 0.81183 0.86879 0.76189 1.90692 1.62080 1.45516 1.49250 1.20320 0.97662 0.94890 1.20338 1.24300 1.00173 0.89342 0.96690 1.77125 0.92899 1.23781 1.20660 1.48809 1.12515 1.07096 1.45573 1.22409 0.81547 0.96823 1.04481 1.23314 0.97293 0.85936 0.95365 1.22428 0.99094 0.99376 0.97261 1.20378 0.83485 0.95671 0.94240 1.44347 1.02613 1.65771 1.19791 1.19486 0.95258 1.36292 0.86721 0.90627 1.25753 0.98980 1.01243 0.98822 1.70170 1.25139 1.46560 1.16511 0.85476 0.78466 0.79098 0.78226 1.20765 1.22742 1.20049 0.94098 0.90478 0.93207 0.90625 0.89185 0.75974 0.78368 0.89086 0.85993 0.88215 0.77150 0.93682 0.92006 0.98390 0.93645 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 7.94 71.98 0.57 -3.78 16 2 C 0.16 5.89 3.20 44.98 0.14 6.04 16 3 H 0.02 0.90 6.64 -2.39 -0.02 0.89 16 4 C -0.12 -3.82 5.07 30.67 0.16 -3.67 16 5 C 0.16 5.47 2.78 45.12 0.13 5.60 16 6 H 0.08 2.63 7.58 -2.38 -0.02 2.61 16 7 N -0.71 -22.77 4.25 -445.18 -1.89 -24.66 16 8 C 0.59 19.91 7.78 86.67 0.67 20.58 16 9 O -0.59 -23.09 16.56 -4.01 -0.07 -23.15 16 10 C -0.32 -8.99 6.13 -20.15 -0.12 -9.11 16 11 C 0.08 2.19 11.50 85.65 0.99 3.18 16 12 N -0.32 -8.54 12.50 -56.28 -0.70 -9.25 16 13 N -0.36 -7.39 3.98 -367.79 -1.46 -8.86 16 14 C 0.09 0.81 11.44 127.77 1.46 2.27 16 15 C 0.13 3.01 11.30 84.27 0.95 3.96 16 16 C -0.14 -5.73 5.80 30.78 0.18 -5.55 16 17 C 0.19 9.15 5.02 86.36 0.43 9.58 16 18 N -0.60 -28.56 2.99 -675.23 -2.02 -30.58 16 19 C -0.25 -13.00 8.60 84.03 0.72 -12.28 16 20 H 0.08 3.81 6.21 -2.91 -0.02 3.79 16 21 C -0.05 -2.94 4.96 84.86 0.42 -2.52 16 22 N -0.94 -55.58 11.14 21.65 0.24 -55.34 16 23 Si 0.96 44.90 29.58 68.60 2.03 46.93 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 28 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.05 1.69 7.45 -2.39 -0.02 1.68 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.40 12.24 5.82 -92.71 -0.54 11.70 16 33 H 0.20 4.58 7.50 -2.91 -0.02 4.56 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.21 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.00 -0.10 7.74 -2.39 -0.02 -0.12 16 41 H 0.05 2.57 6.06 -2.39 -0.01 2.55 16 42 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.63 337.96 3.31 -69.31 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.49 Total: 21.30 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.70 Total: 14.29 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -5.84 Total: -128.68 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.07 Total: -23.15 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.63 3.31 -69.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947039905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.197 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds