Wall clock time and date at job start Tue Mar 31 2020 07:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.44755 * 2 1 4 4 C 1.53047 * 109.46199 * 119.96442 * 2 1 3 5 5 C 1.53188 * 109.31262 * 181.38739 * 4 2 1 6 6 N 1.46915 * 108.77910 * 305.36312 * 5 4 2 7 7 C 1.36934 * 120.63469 * 233.58941 * 6 5 4 8 8 H 1.08003 * 120.00030 * 151.84611 * 7 6 5 9 9 C 1.38816 * 119.99912 * 331.85245 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06625 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.06801 * 9 7 6 12 12 H 1.48502 * 109.47344 * 89.99648 * 11 9 7 13 13 H 1.48498 * 109.47326 * 210.00064 * 11 9 7 14 14 H 1.48506 * 109.47469 * 329.99946 * 11 9 7 15 15 C 1.46932 * 118.73824 * 53.60608 * 6 5 4 16 16 C 1.53035 * 109.46266 * 240.03408 * 2 1 3 17 17 H 1.08995 * 109.52690 * 58.64402 * 16 2 1 18 18 N 1.46507 * 109.49641 * 298.56141 * 16 2 1 19 19 C 1.34782 * 119.99711 * 155.15788 * 18 16 2 20 20 O 1.21278 * 120.00022 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99531 * 180.02562 * 19 18 16 22 22 N 1.46499 * 109.46905 * 180.02562 * 21 19 18 23 23 C 1.34946 * 126.04229 * 124.71276 * 22 21 19 24 24 C 1.35315 * 107.74923 * 179.83737 * 23 22 21 25 25 C 1.39870 * 107.92066 * 0.42725 * 24 23 22 26 26 N 1.30842 * 108.20041 * 359.73887 * 25 24 23 27 27 H 1.09002 * 109.47155 * 300.03308 * 1 2 3 28 28 H 1.08996 * 109.47146 * 60.03671 * 1 2 3 29 29 H 1.09004 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.49452 * 61.43332 * 4 2 1 31 31 H 1.09006 * 109.49423 * 301.34043 * 4 2 1 32 32 H 1.08997 * 109.58983 * 65.15715 * 5 4 2 33 33 H 1.09008 * 109.58546 * 185.43396 * 5 4 2 34 34 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.58034 * 66.18484 * 15 6 5 36 36 H 1.08999 * 109.58895 * 186.45872 * 15 6 5 37 37 H 0.96994 * 120.00124 * 335.16483 * 18 16 2 38 38 H 1.09000 * 109.47013 * 299.99661 * 21 19 18 39 39 H 1.08998 * 109.47325 * 60.00603 * 21 19 18 40 40 H 1.08001 * 126.12215 * 0.02562 * 23 22 21 41 41 H 1.07996 * 126.04068 * 180.15689 * 24 23 22 42 42 H 1.07994 * 125.90543 * 179.71490 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2487 0.0002 7 6 4.9765 -2.2732 0.0002 8 1 5.0045 -2.9702 -0.8244 9 6 5.8614 -2.4161 1.0601 10 7 6.0658 -1.4124 1.8865 11 14 6.7621 -4.0328 1.3133 12 1 8.0466 -4.0059 0.5686 13 1 7.0329 -4.2273 2.7604 14 1 5.9229 -5.1509 0.8123 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7207 -1.2500 17 1 1.6573 -0.2213 -2.1401 18 7 1.5802 -2.1117 -1.2341 19 6 1.4548 -2.7932 -2.3902 20 8 1.7228 -2.2551 -3.4435 21 6 0.9814 -4.2238 -2.3739 22 7 0.9306 -4.7370 -3.7451 23 6 1.5526 -5.8439 -4.2021 24 6 1.2523 -5.9734 -5.5152 25 6 0.4262 -4.9038 -5.8752 26 7 0.2327 -4.1619 -4.8150 27 1 -0.3633 0.5144 0.8897 28 1 -0.3633 0.5132 -0.8903 29 1 -0.3634 -1.0277 0.0005 30 1 1.6978 -1.7556 1.2384 31 1 1.6572 -0.2206 2.1399 32 1 3.9143 0.3410 1.3674 33 1 3.9416 -1.2824 2.1000 34 1 6.6845 -1.5121 2.6269 35 1 3.9143 0.3409 -1.3673 36 1 3.9438 -1.2830 -2.0985 37 1 1.3661 -2.5422 -0.3917 38 1 1.6718 -4.8282 -1.7855 39 1 -0.0131 -4.2725 -1.9303 40 1 2.1758 -6.5091 -3.6228 41 1 1.5941 -6.7609 -6.1705 42 1 0.0186 -4.7214 -6.8586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965148724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:11 Heat of formation + Delta-G solvation = 68.514424 kcal Electronic energy + Delta-G solvation = -24257.588944 eV Core-core repulsion = 20854.270831 eV Total energy + Delta-G solvation = -3403.318112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07617 -39.64369 -37.61576 -34.27161 -33.25295 -32.69169 -31.13278 -30.02312 -29.46673 -27.69911 -26.79834 -24.10355 -22.44465 -21.45893 -21.14656 -20.99753 -20.14941 -18.75972 -17.32912 -17.16658 -16.59157 -15.54160 -15.17156 -14.77219 -14.46668 -14.25730 -13.89383 -13.81866 -13.51574 -13.28634 -13.22719 -13.04738 -12.69064 -12.58138 -12.13613 -12.03274 -11.65059 -11.44883 -11.19746 -10.88925 -10.78834 -10.53278 -10.42436 -10.30189 -10.02153 -9.81362 -9.67710 -9.52054 -9.18128 -8.70068 -8.51171 -8.42248 -6.69364 -5.84397 -3.26492 1.96671 2.48505 2.89835 2.97423 3.31473 3.38750 3.39368 3.50243 4.43662 4.62454 4.85457 4.93942 5.00227 5.13481 5.15947 5.25239 5.30408 5.37467 5.51248 5.61530 5.82239 5.86320 5.90743 5.99476 6.06467 6.15447 6.20108 6.36242 6.38402 6.53781 6.60117 6.71561 6.76214 6.80328 6.97946 7.05323 7.27013 7.58564 7.73966 7.81314 7.86906 8.39496 8.54760 9.16305 9.79173 10.36431 11.23875 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.005481 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.602094 B = 5107.150385 C = 6661.121230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.136 4.136 5 C 0.169 3.831 6 N -0.587 5.587 7 C -0.248 4.248 8 H 0.061 0.939 9 C 0.003 3.997 10 N -0.902 5.902 11 Si 0.900 3.100 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.135 3.865 16 C 0.138 3.862 17 H 0.077 0.923 18 N -0.698 5.698 19 C 0.500 3.500 20 O -0.522 6.522 21 C 0.113 3.887 22 N -0.357 5.357 23 C 0.054 3.946 24 C -0.276 4.276 25 C 0.034 3.966 26 N -0.267 5.267 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.018 0.982 33 H 0.088 0.912 34 H 0.253 0.747 35 H 0.026 0.974 36 H 0.058 0.942 37 H 0.399 0.601 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.173 0.827 41 H 0.145 0.855 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 -5.489 -4.982 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.175 4.175 5 C 0.043 3.957 6 N -0.309 5.309 7 C -0.378 4.378 8 H 0.079 0.921 9 C -0.195 4.195 10 N -0.546 5.546 11 Si 0.730 3.270 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.007 3.993 16 C 0.032 3.968 17 H 0.095 0.905 18 N -0.350 5.350 19 C 0.283 3.717 20 O -0.397 6.397 21 C -0.013 4.013 22 N -0.140 5.140 23 C -0.092 4.092 24 C -0.305 4.305 25 C -0.153 4.153 26 N -0.088 5.088 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.234 0.766 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.190 0.810 41 H 0.163 0.837 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.661 -3.990 -4.976 14.177 hybrid contribution 1.032 -1.755 0.359 2.067 sum -11.629 -5.745 -4.617 13.768 Atomic orbital electron populations 1.21844 0.95949 1.01305 1.01007 1.21319 0.94609 0.99911 0.95448 0.90404 1.22259 1.00913 0.98845 0.95521 1.20798 0.87170 0.97392 0.90365 1.43991 1.48197 1.39605 0.99125 1.19095 1.09715 1.02737 1.06259 0.92083 1.25025 0.97113 0.97340 1.00057 1.70025 1.37415 1.28953 1.18208 0.86346 0.79849 0.83757 0.77071 1.21427 1.21570 1.20662 1.21288 0.90385 0.97015 0.90602 1.21539 0.97136 0.80494 0.97586 0.90469 1.45803 1.66996 1.14115 1.08061 1.20273 0.78961 0.87727 0.84746 1.90752 1.49238 1.69147 1.30597 1.21525 1.04636 0.95276 0.79820 1.48094 1.38318 1.19356 1.08214 1.22563 0.99002 0.91376 0.96248 1.21441 1.09257 1.04434 0.95397 1.23869 0.99446 0.93719 0.98234 1.77469 1.17279 1.19929 0.94092 0.92976 0.93234 0.93116 0.93063 0.92864 0.96379 0.89426 0.93647 0.95667 0.92377 0.76582 0.85700 0.87289 0.81018 0.83722 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.05 37.16 0.34 -1.46 16 2 C -0.09 -1.42 2.48 -90.58 -0.22 -1.65 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.14 -2.26 5.20 -26.61 -0.14 -2.40 16 5 C 0.17 3.71 5.30 -3.72 -0.02 3.69 16 6 N -0.59 -13.79 2.91 -172.32 -0.50 -14.30 16 7 C -0.25 -6.52 9.58 -15.06 -0.14 -6.67 16 8 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 9 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 10 N -0.90 -25.29 11.19 55.49 0.62 -24.67 16 11 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.13 2.84 6.12 -3.71 -0.02 2.82 16 16 C 0.14 2.37 2.24 -67.81 -0.15 2.22 16 17 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 18 N -0.70 -10.82 4.25 -53.69 -0.23 -11.05 16 19 C 0.50 8.21 7.82 -10.98 -0.09 8.13 16 20 O -0.52 -10.85 15.37 5.56 0.09 -10.76 16 21 C 0.11 1.41 6.99 -5.19 -0.04 1.38 16 22 N -0.36 -5.19 3.40 -62.55 -0.21 -5.40 16 23 C 0.05 0.66 11.45 -17.22 -0.20 0.47 16 24 C -0.28 -3.31 10.80 -40.01 -0.43 -3.75 16 25 C 0.03 0.46 12.03 -17.36 -0.21 0.25 16 26 N -0.27 -4.37 11.64 30.62 0.36 -4.01 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 30 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 2.18 6.07 -51.92 -0.31 1.86 16 34 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 37 H 0.40 5.52 6.64 -40.82 -0.27 5.25 16 38 H 0.13 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -33.31 341.24 -7.49 -40.80 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.31 Total: 5.25 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.41 Total: 3.03 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.03 Total: -59.43 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.31 -7.49 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965148724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.317 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds