Wall clock time and date at job start Tue Mar 31 2020 07:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.44755 * 2 1 4 4 C 1.53047 * 109.46199 * 119.96442 * 2 1 3 5 5 C 1.53188 * 109.31262 * 181.38739 * 4 2 1 6 6 N 1.46915 * 108.77910 * 305.36312 * 5 4 2 7 7 C 1.36934 * 120.63469 * 233.58941 * 6 5 4 8 8 H 1.08003 * 120.00030 * 151.84611 * 7 6 5 9 9 C 1.38816 * 119.99912 * 331.85245 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06625 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.06801 * 9 7 6 12 12 H 1.48502 * 109.47344 * 89.99648 * 11 9 7 13 13 H 1.48498 * 109.47326 * 210.00064 * 11 9 7 14 14 H 1.48506 * 109.47469 * 329.99946 * 11 9 7 15 15 C 1.46932 * 118.73824 * 53.60608 * 6 5 4 16 16 C 1.53035 * 109.46266 * 240.03408 * 2 1 3 17 17 H 1.08995 * 109.52690 * 58.64402 * 16 2 1 18 18 N 1.46507 * 109.49641 * 298.56141 * 16 2 1 19 19 C 1.34782 * 119.99711 * 155.15788 * 18 16 2 20 20 O 1.21278 * 120.00022 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99531 * 180.02562 * 19 18 16 22 22 N 1.46499 * 109.46905 * 180.02562 * 21 19 18 23 23 C 1.34946 * 126.04229 * 124.71276 * 22 21 19 24 24 C 1.35315 * 107.74923 * 179.83737 * 23 22 21 25 25 C 1.39870 * 107.92066 * 0.42725 * 24 23 22 26 26 N 1.30842 * 108.20041 * 359.73887 * 25 24 23 27 27 H 1.09002 * 109.47155 * 300.03308 * 1 2 3 28 28 H 1.08996 * 109.47146 * 60.03671 * 1 2 3 29 29 H 1.09004 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.49452 * 61.43332 * 4 2 1 31 31 H 1.09006 * 109.49423 * 301.34043 * 4 2 1 32 32 H 1.08997 * 109.58983 * 65.15715 * 5 4 2 33 33 H 1.09008 * 109.58546 * 185.43396 * 5 4 2 34 34 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.58034 * 66.18484 * 15 6 5 36 36 H 1.08999 * 109.58895 * 186.45872 * 15 6 5 37 37 H 0.96994 * 120.00124 * 335.16483 * 18 16 2 38 38 H 1.09000 * 109.47013 * 299.99661 * 21 19 18 39 39 H 1.08998 * 109.47325 * 60.00603 * 21 19 18 40 40 H 1.08001 * 126.12215 * 0.02562 * 23 22 21 41 41 H 1.07996 * 126.04068 * 180.15689 * 24 23 22 42 42 H 1.07994 * 125.90543 * 179.71490 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2487 0.0002 7 6 4.9765 -2.2732 0.0002 8 1 5.0045 -2.9702 -0.8244 9 6 5.8614 -2.4161 1.0601 10 7 6.0658 -1.4124 1.8865 11 14 6.7621 -4.0328 1.3133 12 1 8.0466 -4.0059 0.5686 13 1 7.0329 -4.2273 2.7604 14 1 5.9229 -5.1509 0.8123 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7207 -1.2500 17 1 1.6573 -0.2213 -2.1401 18 7 1.5802 -2.1117 -1.2341 19 6 1.4548 -2.7932 -2.3902 20 8 1.7228 -2.2551 -3.4435 21 6 0.9814 -4.2238 -2.3739 22 7 0.9306 -4.7370 -3.7451 23 6 1.5526 -5.8439 -4.2021 24 6 1.2523 -5.9734 -5.5152 25 6 0.4262 -4.9038 -5.8752 26 7 0.2327 -4.1619 -4.8150 27 1 -0.3633 0.5144 0.8897 28 1 -0.3633 0.5132 -0.8903 29 1 -0.3634 -1.0277 0.0005 30 1 1.6978 -1.7556 1.2384 31 1 1.6572 -0.2206 2.1399 32 1 3.9143 0.3410 1.3674 33 1 3.9416 -1.2824 2.1000 34 1 6.6845 -1.5121 2.6269 35 1 3.9143 0.3409 -1.3673 36 1 3.9438 -1.2830 -2.0985 37 1 1.3661 -2.5422 -0.3917 38 1 1.6718 -4.8282 -1.7855 39 1 -0.0131 -4.2725 -1.9303 40 1 2.1758 -6.5091 -3.6228 41 1 1.5941 -6.7609 -6.1705 42 1 0.0186 -4.7214 -6.8586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965148724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:11 Heat of formation + Delta-G solvation = 46.460372 kcal Electronic energy + Delta-G solvation = -24258.545279 eV Core-core repulsion = 20854.270831 eV Total energy + Delta-G solvation = -3404.274448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.06804 -40.99266 -39.08209 -35.99871 -34.40298 -33.95867 -32.99022 -31.14152 -30.81676 -29.07668 -28.07937 -25.80275 -23.95631 -22.84261 -22.56788 -21.93134 -21.26951 -20.29117 -18.71126 -18.38592 -18.05045 -16.91320 -16.65067 -16.35870 -15.82544 -15.54815 -15.37303 -15.03050 -14.92933 -14.65575 -14.39754 -14.30044 -14.08426 -13.61292 -13.50323 -13.26871 -13.12120 -12.99635 -12.76813 -12.60505 -12.39872 -12.19887 -11.90261 -11.64884 -11.52745 -11.30016 -11.10025 -11.06506 -10.55765 -10.27540 -9.99019 -9.46903 -8.63613 -7.86955 -5.32295 0.99691 1.45757 1.47760 1.56006 1.56295 1.65006 2.03776 2.31016 2.50738 3.27657 3.63508 3.66430 3.78534 3.88872 4.01261 4.08511 4.09290 4.16034 4.27987 4.47019 4.61472 4.73235 4.75998 4.77540 4.80367 4.93267 4.99894 5.00542 5.07345 5.18981 5.21897 5.27283 5.45428 5.52211 5.62436 5.64558 5.78160 5.79833 6.11869 6.38470 6.63575 6.84093 7.15780 7.30567 7.85137 8.37864 9.18436 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.005481 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.602094 B = 5107.150385 C = 6661.121230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.121 4.121 5 C 0.174 3.826 6 N -0.596 5.596 7 C -0.254 4.254 8 H 0.055 0.945 9 C -0.045 4.045 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.294 1.294 13 H -0.291 1.291 14 H -0.265 1.265 15 C 0.137 3.863 16 C 0.151 3.849 17 H 0.071 0.929 18 N -0.689 5.689 19 C 0.496 3.504 20 O -0.571 6.571 21 C 0.115 3.885 22 N -0.372 5.372 23 C 0.048 3.952 24 C -0.282 4.282 25 C 0.027 3.973 26 N -0.320 5.320 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.076 0.924 32 H -0.009 1.009 33 H 0.058 0.942 34 H 0.250 0.750 35 H 0.014 0.986 36 H 0.030 0.970 37 H 0.410 0.590 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.205 0.795 41 H 0.171 0.829 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 -7.314 -4.567 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.160 4.160 5 C 0.049 3.951 6 N -0.320 5.320 7 C -0.384 4.384 8 H 0.072 0.928 9 C -0.241 4.241 10 N -0.578 5.578 11 Si 0.791 3.209 12 H -0.221 1.221 13 H -0.217 1.217 14 H -0.189 1.189 15 C 0.010 3.990 16 C 0.044 3.956 17 H 0.089 0.911 18 N -0.341 5.341 19 C 0.281 3.719 20 O -0.450 6.450 21 C -0.009 4.009 22 N -0.154 5.154 23 C -0.097 4.097 24 C -0.311 4.311 25 C -0.160 4.160 26 N -0.141 5.141 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.009 0.991 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.049 0.951 37 H 0.247 0.753 38 H 0.171 0.829 39 H 0.158 0.842 40 H 0.222 0.778 41 H 0.188 0.812 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.334 -5.830 -4.553 16.130 hybrid contribution 1.614 -1.147 0.151 1.986 sum -12.720 -6.977 -4.401 15.161 Atomic orbital electron populations 1.21751 0.92936 1.02363 1.02100 1.21250 0.96906 0.99021 0.93335 0.90861 1.22065 0.96367 1.00309 0.97262 1.20665 0.90896 0.94925 0.88631 1.44160 1.48189 1.39372 1.00267 1.19289 1.10080 1.03118 1.05946 0.92765 1.25715 0.98130 1.00177 1.00041 1.70178 1.38271 1.30707 1.18689 0.85364 0.78390 0.80634 0.76553 1.22132 1.21711 1.18918 1.21291 0.93432 0.95515 0.88798 1.21222 0.93819 0.81981 0.98586 0.91063 1.45709 1.66351 1.13451 1.08628 1.21032 0.77757 0.89216 0.83905 1.90731 1.51359 1.70592 1.32312 1.21722 1.06862 0.92499 0.79862 1.48284 1.38718 1.19973 1.08473 1.23224 0.98577 0.91062 0.96858 1.21847 1.08769 1.04653 0.95851 1.24415 0.99240 0.93642 0.98679 1.77393 1.19376 1.21859 0.95483 0.91108 0.92977 0.92077 0.91709 0.90534 0.99071 0.92369 0.94120 0.96853 0.95095 0.75277 0.82900 0.84250 0.77832 0.81184 0.78134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.05 71.98 0.65 -2.25 16 2 C -0.09 -2.45 2.48 -10.77 -0.03 -2.48 16 3 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 4 C -0.12 -3.78 5.20 30.67 0.16 -3.62 16 5 C 0.17 7.73 5.30 86.36 0.46 8.19 16 6 N -0.60 -28.51 2.91 -699.11 -2.03 -30.55 16 7 C -0.25 -13.49 9.58 84.03 0.81 -12.68 16 8 H 0.05 2.91 7.89 -2.91 -0.02 2.89 16 9 C -0.04 -2.42 4.92 84.86 0.42 -2.00 16 10 N -0.93 -53.39 11.19 21.65 0.24 -53.15 16 11 Si 0.96 43.17 29.59 68.60 2.03 45.20 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 C 0.14 5.93 6.12 86.36 0.53 6.46 16 16 C 0.15 5.08 2.24 45.07 0.10 5.18 16 17 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 18 N -0.69 -20.38 4.25 -442.16 -1.88 -22.26 16 19 C 0.50 15.78 7.82 87.66 0.69 16.47 16 20 O -0.57 -23.97 15.37 -3.02 -0.05 -24.02 16 21 C 0.12 2.60 6.99 85.63 0.60 3.20 16 22 N -0.37 -10.17 3.40 -351.80 -1.20 -11.37 16 23 C 0.05 1.07 11.45 83.54 0.96 2.02 16 24 C -0.28 -6.21 10.80 21.99 0.24 -5.97 16 25 C 0.03 0.68 12.03 85.24 1.03 1.71 16 26 N -0.32 -10.27 11.64 -57.02 -0.66 -10.93 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.21 7.54 -2.38 -0.02 1.19 16 30 H 0.06 1.87 6.40 -2.39 -0.02 1.86 16 31 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.06 2.94 6.07 -2.38 -0.01 2.92 16 34 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 37 H 0.41 10.27 6.64 -92.71 -0.62 9.66 16 38 H 0.15 2.54 8.07 -2.39 -0.02 2.53 16 39 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 42 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -75.16 341.24 3.45 -71.71 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.40 Total: 21.14 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 6.60 Total: 14.22 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.53 Total: -128.26 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.16 3.45 -71.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965148724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.172 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds