Wall clock time and date at job start Tue Mar 31 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46640 * 2 1 4 4 C 1.53000 * 109.47325 * 120.00099 * 2 1 3 5 5 N 1.46496 * 109.46847 * 295.00063 * 4 2 1 6 6 C 1.36940 * 119.99709 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00381 * 359.97438 * 6 5 4 8 8 C 1.38820 * 119.99968 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99780 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99834 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47406 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46998 * 119.99870 * 10 8 6 13 13 H 1.48508 * 109.46651 * 239.99425 * 10 8 6 14 14 C 1.53000 * 109.47143 * 240.00576 * 2 1 3 15 15 N 1.46495 * 109.47347 * 64.99600 * 14 2 1 16 16 C 1.34782 * 119.99873 * 180.02562 * 15 14 2 17 17 O 1.21283 * 120.00143 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99950 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.46967 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.46965 * 179.97438 * 19 18 16 21 21 C 1.38386 * 120.00005 * 124.99984 * 20 19 18 22 22 N 1.32124 * 119.99712 * 180.02562 * 21 20 19 23 23 C 1.32158 * 120.00097 * 359.97438 * 22 21 20 24 24 C 1.38336 * 120.00075 * 0.26620 * 23 22 21 25 25 N 1.32127 * 120.00100 * 305.02162 * 20 19 18 26 26 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47482 * 299.99760 * 1 2 3 28 28 H 1.09007 * 109.47584 * 59.99993 * 1 2 3 29 29 H 1.09004 * 109.46890 * 54.99715 * 4 2 1 30 30 H 1.08995 * 109.47121 * 174.99943 * 4 2 1 31 31 H 0.97008 * 120.00535 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99310 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46793 * 304.99556 * 14 2 1 34 34 H 1.08999 * 109.47080 * 184.99931 * 14 2 1 35 35 H 0.96994 * 120.00389 * 0.02562 * 15 14 2 36 36 H 1.09000 * 109.47243 * 59.99934 * 18 16 15 37 37 H 1.08999 * 109.47190 * 299.99966 * 18 16 15 38 38 H 1.09000 * 109.47206 * 59.99895 * 19 18 16 39 39 H 1.08999 * 109.47125 * 299.99990 * 19 18 16 40 40 H 1.08005 * 120.00186 * 0.03930 * 21 20 19 41 41 H 1.08002 * 119.99718 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00403 * 179.72028 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0011 -0.4209 3.6855 7 1 2.5614 -1.3386 3.7865 8 6 1.6334 0.2958 4.8161 9 7 0.9501 1.4140 4.6931 10 14 2.1097 -0.3262 6.5119 11 1 2.8696 -1.5949 6.3785 12 1 2.9545 0.6883 7.1919 13 1 0.8828 -0.5664 7.3136 14 6 2.0400 -0.7211 -1.2493 15 7 1.6524 0.0355 -2.4424 16 6 1.9955 -0.4134 -3.6660 17 8 2.6248 -1.4440 -3.7794 18 6 1.5973 0.3651 -4.8933 19 6 2.1062 -0.3568 -6.1426 20 6 1.7074 0.4215 -7.3700 21 6 2.6703 0.8163 -8.2821 22 7 2.3207 1.4991 -9.3578 23 6 1.0514 1.8046 -9.5630 24 6 0.0894 1.4142 -8.6487 25 7 0.4384 0.7273 -7.5750 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2055 31 1 1.1482 0.8591 2.3518 32 1 0.6929 1.9145 5.4832 33 1 1.6054 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2057 35 1 1.1488 0.8595 -2.3518 36 1 2.0326 1.3634 -4.8474 37 1 0.5110 0.4441 -4.9368 38 1 1.6705 -1.3549 -6.1883 39 1 3.1924 -0.4362 -6.0993 40 1 3.7076 0.5662 -8.1147 41 1 0.7657 2.3631 -10.4422 42 1 -0.9473 1.6677 -8.8141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:38 Heat of formation + Delta-G solvation = 3.632451 kcal Electronic energy + Delta-G solvation = -21782.424412 eV Core-core repulsion = 18376.292806 eV Total energy + Delta-G solvation = -3406.131606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52305 -39.79237 -36.92481 -35.30109 -34.37175 -33.87783 -32.51634 -30.90288 -29.96144 -27.00751 -26.00426 -25.13417 -24.70146 -22.78861 -22.05535 -20.53753 -19.74766 -18.04111 -17.55206 -17.31358 -16.89281 -16.19789 -15.91220 -15.77458 -15.29632 -14.70619 -14.53244 -14.19595 -13.74050 -13.60013 -13.49999 -13.04556 -12.76107 -12.62968 -12.39525 -12.28652 -12.05369 -12.00656 -11.68872 -11.39440 -11.06872 -10.92598 -10.71673 -10.57512 -10.42398 -10.07664 -9.91261 -9.70206 -9.60757 -9.47674 -9.03726 -8.88778 -6.92854 -5.77940 -3.06206 0.32086 0.69344 2.58645 3.08415 3.28455 3.43081 3.49054 3.51157 3.60671 3.84067 4.03343 4.31914 4.55089 4.58763 4.66196 4.77282 4.93323 4.98942 5.03840 5.10899 5.21471 5.28943 5.38348 5.57115 5.60185 5.68552 5.81272 5.93860 5.96172 5.99024 6.10637 6.24292 6.38714 6.48080 6.64669 6.76762 6.82971 6.86210 7.33964 7.46430 7.70529 8.16967 8.41309 9.52630 10.09986 10.44693 11.45147 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.046434 B = 0.001992 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.857651 B =14052.405156 C =14330.315132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.725 5.725 16 C 0.511 3.489 17 O -0.545 6.545 18 C -0.133 4.133 19 C -0.051 4.051 20 C 0.085 3.915 21 C 0.053 3.947 22 N -0.437 5.437 23 C 0.039 3.961 24 C 0.055 3.945 25 N -0.436 5.436 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.171 0.829 41 H 0.169 0.831 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 1.479 -28.398 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.376 5.376 16 C 0.297 3.703 17 O -0.423 6.423 18 C -0.173 4.173 19 C -0.090 4.090 20 C -0.055 4.055 21 C -0.107 4.107 22 N -0.151 5.151 23 C -0.121 4.121 24 C -0.105 4.105 25 N -0.152 5.152 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.188 0.812 41 H 0.186 0.814 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.846 0.621 -28.341 28.360 hybrid contribution -0.301 0.516 0.972 1.141 sum -1.146 1.137 -27.369 27.416 Atomic orbital electron populations 1.21791 0.94667 1.01941 1.01485 1.21552 0.96714 1.00475 0.94223 0.90570 1.20579 0.96611 0.94217 0.85395 1.42350 1.66914 1.27691 1.00603 1.19295 1.28569 1.05400 0.83651 0.91077 1.24747 1.01056 0.97435 0.97890 1.69670 1.43655 1.16635 1.28362 0.86102 0.77589 0.77834 0.84593 1.20534 1.21884 1.21884 1.21419 1.00104 0.95290 0.82967 1.46088 1.57626 1.27896 1.06022 1.20561 0.79302 0.85720 0.84685 1.90710 1.40165 1.24608 1.86818 1.21565 1.04078 0.99887 0.91814 1.20262 1.02492 0.98380 0.87826 1.22365 0.89797 0.96028 0.97312 1.23702 1.01547 0.94927 0.90475 1.68468 1.19003 1.08751 1.18899 1.23784 0.89366 0.98554 1.00352 1.23817 1.01818 0.94361 0.90496 1.68286 1.18328 1.09188 1.19371 0.92824 0.91171 0.93893 0.95994 0.96126 0.78214 0.93589 0.91351 0.91369 0.76465 0.89016 0.87843 0.88573 0.88820 0.81218 0.81373 0.81239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.25 5.33 -59.91 -0.32 -18.57 16 6 C -0.24 -6.66 9.99 -15.05 -0.15 -6.81 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 10 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.13 1.69 5.06 -4.04 -0.02 1.67 16 15 N -0.72 -8.01 5.28 -60.30 -0.32 -8.32 16 16 C 0.51 5.88 7.83 -10.99 -0.09 5.79 16 17 O -0.55 -8.29 15.98 5.55 0.09 -8.20 16 18 C -0.13 -1.07 5.56 -27.88 -0.16 -1.23 16 19 C -0.05 -0.40 4.92 -27.88 -0.14 -0.54 16 20 C 0.09 0.69 6.18 -82.41 -0.51 0.18 16 21 C 0.05 0.41 10.85 -17.37 -0.19 0.22 16 22 N -0.44 -3.67 10.50 -13.06 -0.14 -3.81 16 23 C 0.04 0.24 11.22 -17.38 -0.20 0.05 16 24 C 0.06 0.34 11.22 -17.38 -0.20 0.15 16 25 N -0.44 -3.71 10.05 -9.29 -0.09 -3.81 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 28 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 32 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.56 7.66 -40.82 -0.31 3.24 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.79 7.96 -51.93 -0.41 0.38 16 38 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.09 0.68 7.85 -51.93 -0.41 0.27 16 40 H 0.17 0.89 7.96 -52.48 -0.42 0.48 16 41 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -34.53 356.45 -7.70 -42.23 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.35 Total: 6.62 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.65 Total: -1.56 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.14 Total: -61.89 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.53 -7.70 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.864 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds