Wall clock time and date at job start Tue Mar 31 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47132 * 2 1 4 4 C 1.53001 * 109.47053 * 240.00703 * 2 1 3 5 5 N 1.46500 * 109.47273 * 184.99923 * 4 2 1 6 6 C 1.46496 * 120.00188 * 269.99729 * 5 4 2 7 7 C 1.36936 * 119.99710 * 89.99390 * 5 4 2 8 8 H 1.07996 * 120.00566 * 20.30994 * 7 5 4 9 9 C 1.38816 * 120.00054 * 200.30317 * 7 5 4 10 10 N 1.31626 * 119.99605 * 15.02270 * 9 7 5 11 11 Si 1.86799 * 120.00371 * 195.01902 * 9 7 5 12 12 H 1.48500 * 109.47160 * 85.00485 * 11 9 7 13 13 H 1.48504 * 109.47017 * 205.00652 * 11 9 7 14 14 H 1.48504 * 109.46854 * 325.00318 * 11 9 7 15 15 N 1.46496 * 109.47326 * 120.00606 * 2 1 3 16 16 C 1.34780 * 119.99550 * 274.99863 * 15 2 1 17 17 O 1.21277 * 120.00416 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99617 * 179.97438 * 16 15 2 19 19 H 1.09001 * 115.56051 * 34.32061 * 18 16 15 20 20 C 1.53003 * 117.50379 * 248.62224 * 18 16 15 21 21 C 1.52999 * 59.99985 * 252.51481 * 20 18 16 22 22 H 1.09004 * 117.49906 * 107.48976 * 21 20 18 23 23 C 1.50704 * 117.49609 * 252.48426 * 21 20 18 24 24 C 1.34671 * 126.59043 * 33.77571 * 23 21 20 25 25 N 1.34132 * 108.01991 * 179.97438 * 24 23 21 26 26 C 1.30499 * 109.25243 * 359.97438 * 25 24 23 27 27 N 1.35041 * 108.70417 * 359.77166 * 26 25 24 28 28 H 0.96996 * 126.39790 * 180.27122 * 27 26 25 29 29 H 1.09004 * 109.47103 * 299.99725 * 1 2 3 30 30 H 1.09001 * 109.47362 * 59.99480 * 1 2 3 31 31 H 1.08996 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46800 * 304.99619 * 4 2 1 33 33 H 1.09003 * 109.47589 * 64.99544 * 4 2 1 34 34 H 1.09004 * 109.47085 * 95.10114 * 6 5 4 35 35 H 1.08996 * 109.47170 * 215.09870 * 6 5 4 36 36 H 1.08998 * 109.46958 * 335.10268 * 6 5 4 37 37 H 0.97002 * 119.99971 * 179.97438 * 10 9 7 38 38 H 0.96996 * 119.99908 * 94.99585 * 15 2 1 39 39 H 1.08992 * 117.50143 * 145.01991 * 20 18 16 40 40 H 1.09001 * 117.51373 * 359.97438 * 20 18 16 41 41 H 1.07997 * 125.98834 * 359.96352 * 24 23 21 42 42 H 1.08003 * 125.64693 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3343 0.2342 -1.7614 7 6 4.0849 -1.9158 -0.6025 8 1 3.5229 -2.8297 -0.4792 9 6 5.4003 -1.8456 -0.1647 10 7 5.9903 -0.6758 -0.0382 11 14 6.3332 -3.4112 0.2450 12 1 6.9258 -3.9733 -0.9952 13 1 7.4147 -3.1036 1.2151 14 1 5.4007 -4.4015 0.8410 15 7 2.0184 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8582 1.1582 2.4118 18 6 2.6489 -0.7290 3.5876 19 1 3.3929 -1.5059 3.4114 20 6 1.6566 -0.9474 4.7315 21 6 2.7729 0.0890 4.8746 22 1 2.4915 1.1412 4.8312 23 6 3.9140 -0.2409 5.8021 24 6 4.4330 -1.4618 6.0336 25 7 5.4311 -1.3272 6.9195 26 6 5.5505 -0.0692 7.2453 27 7 4.6262 0.6436 6.5663 28 1 4.4910 1.6030 6.6129 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 1.7516 -0.1581 -2.1371 34 1 4.6151 0.9372 -0.9771 35 1 5.2330 -0.2043 -2.1951 36 1 3.7755 0.7587 -2.5364 37 1 6.9094 -0.6267 0.2681 38 1 2.2490 -1.6318 1.1524 39 1 1.7475 -1.8680 5.3078 40 1 0.6407 -0.5767 4.5945 41 1 4.1033 -2.3871 5.5847 42 1 6.2721 0.3354 7.9397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:23 Heat of formation + Delta-G solvation = 67.599047 kcal Electronic energy + Delta-G solvation = -23884.599812 eV Core-core repulsion = 20481.242006 eV Total energy + Delta-G solvation = -3403.357806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01609 -39.44998 -36.97943 -35.77166 -33.92948 -32.45046 -31.34612 -30.11048 -29.08451 -26.19265 -25.61239 -24.33778 -23.20042 -21.69524 -21.56192 -20.49413 -19.90067 -19.44358 -18.02160 -16.95797 -16.43390 -15.59613 -14.90453 -14.87901 -14.66210 -14.38881 -14.03619 -13.73619 -13.61385 -13.41922 -13.09905 -12.85874 -12.31199 -12.14854 -11.97200 -11.85239 -11.40759 -11.32957 -10.89781 -10.84043 -10.69019 -10.47052 -10.41086 -10.24199 -10.04543 -9.95565 -9.92168 -9.82255 -9.24833 -8.56969 -8.26335 -8.17275 -6.81341 -5.74767 -3.19108 1.97479 3.02121 3.09624 3.24306 3.35872 3.42567 3.46310 3.84267 4.18442 4.46881 4.63313 4.84804 4.87678 5.05301 5.20423 5.33779 5.37497 5.46983 5.56701 5.60608 5.65545 5.73915 5.88877 5.97588 6.00240 6.11792 6.16329 6.24507 6.37771 6.44772 6.50830 6.72751 6.75955 6.87895 7.29713 7.36147 7.38130 7.69085 7.77649 8.08849 8.31345 8.34930 8.95143 9.19021 9.83915 10.33035 11.29263 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.005927 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.183893 B = 4722.840404 C = 6284.633365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.259 4.259 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.680 5.680 16 C 0.548 3.452 17 O -0.566 6.566 18 C -0.161 4.161 19 H 0.130 0.870 20 C -0.137 4.137 21 C -0.060 4.060 22 H 0.122 0.878 23 C 0.019 3.981 24 C -0.023 4.023 25 N -0.493 5.493 26 C 0.178 3.822 27 N -0.565 5.565 28 H 0.419 0.581 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.042 0.958 36 H -0.003 1.003 37 H 0.252 0.748 38 H 0.405 0.595 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.168 0.832 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 1.583 9.161 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.328 5.328 16 C 0.334 3.666 17 O -0.446 6.446 18 C -0.182 4.182 19 H 0.148 0.852 20 C -0.175 4.175 21 C -0.080 4.080 22 H 0.140 0.860 23 C -0.097 4.097 24 C -0.171 4.171 25 N -0.212 5.212 26 C -0.105 4.105 27 N -0.168 5.168 28 H 0.257 0.743 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.062 0.938 38 H 0.241 0.759 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.185 0.815 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.559 1.745 9.498 12.264 hybrid contribution 0.495 -0.028 -0.043 0.498 sum -7.064 1.716 9.455 11.927 Atomic orbital electron populations 1.22153 0.96921 1.01254 1.01464 1.21836 0.91755 0.98362 0.87082 0.90661 1.21184 0.85952 0.97921 0.93588 1.43905 0.98892 1.22667 1.66553 1.20787 0.92896 0.90439 0.93999 1.19053 0.95943 0.89858 1.33959 0.91488 1.24938 0.98539 0.96166 0.99558 1.70092 1.12758 1.21790 1.49457 0.86417 0.80079 0.83109 0.77781 1.21549 1.21750 1.20439 1.45611 1.64559 1.14349 1.08268 1.19295 0.77017 0.86387 0.83939 1.90603 1.52426 1.16062 1.85550 1.22419 1.03856 1.03271 0.88687 0.85227 1.23097 0.94864 1.00184 0.99331 1.20084 0.94422 0.98658 0.94819 0.86021 1.20356 0.98966 0.90449 0.99900 1.22025 0.96985 0.96956 1.01144 1.70263 1.18621 1.17218 1.15072 1.24910 0.96521 0.87825 1.01290 1.43154 1.27955 1.10795 1.34870 0.74315 0.93039 0.92319 0.92968 0.93296 0.93010 0.95363 0.93890 0.98474 0.93770 0.75886 0.87487 0.87799 0.81456 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -1.99 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.97 16 3 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 4 C 0.14 2.69 5.36 -4.04 -0.02 2.67 16 5 N -0.60 -14.11 2.82 -181.12 -0.51 -14.62 16 6 C 0.16 3.98 9.02 59.84 0.54 4.52 16 7 C -0.26 -6.51 8.02 -15.06 -0.12 -6.63 16 8 H 0.07 1.62 7.86 -52.49 -0.41 1.21 16 9 C 0.01 0.20 5.06 -17.43 -0.09 0.11 16 10 N -0.90 -25.50 10.67 55.49 0.59 -24.91 16 11 Si 0.90 21.21 29.58 -169.99 -5.03 16.19 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 N -0.68 -12.78 4.49 -53.81 -0.24 -13.02 16 16 C 0.55 10.51 7.58 -10.98 -0.08 10.42 16 17 O -0.57 -12.37 15.92 5.56 0.09 -12.28 16 18 C -0.16 -2.55 5.71 -91.77 -0.52 -3.07 16 19 H 0.13 2.14 7.98 -51.93 -0.41 1.72 16 20 C -0.14 -1.66 9.76 -26.73 -0.26 -1.93 16 21 C -0.06 -0.85 5.84 -91.77 -0.54 -1.38 16 22 H 0.12 1.79 7.67 -51.93 -0.40 1.39 16 23 C 0.02 0.27 6.92 -81.60 -0.56 -0.29 16 24 C -0.02 -0.36 10.94 -17.81 -0.19 -0.55 16 25 N -0.49 -7.73 11.25 -14.66 -0.16 -7.90 16 26 C 0.18 2.15 13.04 -90.38 -1.18 0.98 16 27 N -0.56 -6.62 6.15 -10.30 -0.06 -6.68 16 28 H 0.42 3.57 8.96 -40.82 -0.37 3.20 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 33 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16 35 H 0.04 1.12 7.21 -51.93 -0.37 0.75 16 36 H 0.00 -0.07 7.83 -51.93 -0.41 -0.48 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.41 7.52 7.40 -40.82 -0.30 7.22 16 39 H 0.11 1.11 7.95 -51.93 -0.41 0.69 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.21 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -33.19 352.54 -9.25 -42.44 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.36 Total: 10.64 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.88 Total: 4.81 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.39 Total: -67.12 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.19 -9.25 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.043 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds