Wall clock time and date at job start Tue Mar 31 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47132 * 2 1 4 4 C 1.53001 * 109.47053 * 240.00703 * 2 1 3 5 5 N 1.46500 * 109.47273 * 184.99923 * 4 2 1 6 6 C 1.46496 * 120.00188 * 269.99729 * 5 4 2 7 7 C 1.36936 * 119.99710 * 89.99390 * 5 4 2 8 8 H 1.07996 * 120.00566 * 20.30994 * 7 5 4 9 9 C 1.38816 * 120.00054 * 200.30317 * 7 5 4 10 10 N 1.31626 * 119.99605 * 15.02270 * 9 7 5 11 11 Si 1.86799 * 120.00371 * 195.01902 * 9 7 5 12 12 H 1.48500 * 109.47160 * 85.00485 * 11 9 7 13 13 H 1.48504 * 109.47017 * 205.00652 * 11 9 7 14 14 H 1.48504 * 109.46854 * 325.00318 * 11 9 7 15 15 N 1.46496 * 109.47326 * 120.00606 * 2 1 3 16 16 C 1.34780 * 119.99550 * 274.99863 * 15 2 1 17 17 O 1.21277 * 120.00416 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99617 * 179.97438 * 16 15 2 19 19 H 1.09001 * 115.56051 * 34.32061 * 18 16 15 20 20 C 1.53003 * 117.50379 * 248.62224 * 18 16 15 21 21 C 1.52999 * 59.99985 * 252.51481 * 20 18 16 22 22 H 1.09004 * 117.49906 * 107.48976 * 21 20 18 23 23 C 1.50704 * 117.49609 * 252.48426 * 21 20 18 24 24 C 1.34671 * 126.59043 * 33.77571 * 23 21 20 25 25 N 1.34132 * 108.01991 * 179.97438 * 24 23 21 26 26 C 1.30499 * 109.25243 * 359.97438 * 25 24 23 27 27 N 1.35041 * 108.70417 * 359.77166 * 26 25 24 28 28 H 0.96996 * 126.39790 * 180.27122 * 27 26 25 29 29 H 1.09004 * 109.47103 * 299.99725 * 1 2 3 30 30 H 1.09001 * 109.47362 * 59.99480 * 1 2 3 31 31 H 1.08996 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46800 * 304.99619 * 4 2 1 33 33 H 1.09003 * 109.47589 * 64.99544 * 4 2 1 34 34 H 1.09004 * 109.47085 * 95.10114 * 6 5 4 35 35 H 1.08996 * 109.47170 * 215.09870 * 6 5 4 36 36 H 1.08998 * 109.46958 * 335.10268 * 6 5 4 37 37 H 0.97002 * 119.99971 * 179.97438 * 10 9 7 38 38 H 0.96996 * 119.99908 * 94.99585 * 15 2 1 39 39 H 1.08992 * 117.50143 * 145.01991 * 20 18 16 40 40 H 1.09001 * 117.51373 * 359.97438 * 20 18 16 41 41 H 1.07997 * 125.98834 * 359.96352 * 24 23 21 42 42 H 1.08003 * 125.64693 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3343 0.2342 -1.7614 7 6 4.0849 -1.9158 -0.6025 8 1 3.5229 -2.8297 -0.4792 9 6 5.4003 -1.8456 -0.1647 10 7 5.9903 -0.6758 -0.0382 11 14 6.3332 -3.4112 0.2450 12 1 6.9258 -3.9733 -0.9952 13 1 7.4147 -3.1036 1.2151 14 1 5.4007 -4.4015 0.8410 15 7 2.0184 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8582 1.1582 2.4118 18 6 2.6489 -0.7290 3.5876 19 1 3.3929 -1.5059 3.4114 20 6 1.6566 -0.9474 4.7315 21 6 2.7729 0.0890 4.8746 22 1 2.4915 1.1412 4.8312 23 6 3.9140 -0.2409 5.8021 24 6 4.4330 -1.4618 6.0336 25 7 5.4311 -1.3272 6.9195 26 6 5.5505 -0.0692 7.2453 27 7 4.6262 0.6436 6.5663 28 1 4.4910 1.6030 6.6129 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 1.7516 -0.1581 -2.1371 34 1 4.6151 0.9372 -0.9771 35 1 5.2330 -0.2043 -2.1951 36 1 3.7755 0.7587 -2.5364 37 1 6.9094 -0.6267 0.2681 38 1 2.2490 -1.6318 1.1524 39 1 1.7475 -1.8680 5.3078 40 1 0.6407 -0.5767 4.5945 41 1 4.1033 -2.3871 5.5847 42 1 6.2721 0.3354 7.9397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754312533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:23 Heat of formation + Delta-G solvation = 46.411471 kcal Electronic energy + Delta-G solvation = -23885.518574 eV Core-core repulsion = 20481.242006 eV Total energy + Delta-G solvation = -3404.276568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.03990 -40.88805 -38.42539 -37.27122 -35.63867 -33.48276 -33.15311 -31.66981 -30.16203 -28.04320 -27.35653 -25.64803 -24.26706 -23.43659 -22.57305 -21.76108 -21.28501 -20.84192 -19.11755 -18.71208 -17.92844 -17.09859 -16.75301 -16.01131 -15.91398 -15.64222 -15.56512 -15.17510 -14.98086 -14.85395 -14.47169 -14.44176 -13.86482 -13.51042 -13.36108 -13.10196 -12.93298 -12.85350 -12.71303 -12.52880 -12.16632 -12.00468 -11.95534 -11.93449 -11.67861 -11.60189 -11.03668 -10.95819 -10.75210 -10.58599 -9.78597 -9.24710 -8.78041 -7.77490 -5.22033 0.93477 1.47391 1.49999 1.56708 1.68672 2.12190 2.13989 2.49796 2.54829 3.00084 3.38146 3.59265 3.71231 3.73572 3.89258 3.92959 4.09596 4.15785 4.30800 4.44962 4.47748 4.56241 4.57145 4.74538 4.77289 4.84917 4.89848 4.93374 5.02413 5.05491 5.21194 5.29819 5.32599 5.42623 5.66538 5.69956 5.73225 5.81970 6.34081 6.51822 6.81752 7.07136 7.17467 7.46265 7.91114 8.36326 9.25845 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.005927 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.183893 B = 4722.840404 C = 6284.633365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 H 0.037 0.963 4 C 0.141 3.859 5 N -0.611 5.611 6 C 0.178 3.822 7 C -0.243 4.243 8 H 0.083 0.917 9 C -0.047 4.047 10 N -0.934 5.934 11 Si 0.950 3.050 12 H -0.292 1.292 13 H -0.311 1.311 14 H -0.258 1.258 15 N -0.682 5.682 16 C 0.541 3.459 17 O -0.600 6.600 18 C -0.182 4.182 19 H 0.120 0.880 20 C -0.100 4.100 21 C -0.059 4.059 22 H 0.114 0.886 23 C 0.007 3.993 24 C -0.043 4.043 25 N -0.536 5.536 26 C 0.191 3.809 27 N -0.558 5.558 28 H 0.434 0.566 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.073 0.927 34 H -0.009 1.009 35 H 0.017 0.983 36 H 0.029 0.971 37 H 0.240 0.760 38 H 0.407 0.593 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.171 0.829 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.827 0.571 9.706 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.056 0.944 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.033 3.967 7 C -0.373 4.373 8 H 0.101 0.899 9 C -0.242 4.242 10 N -0.581 5.581 11 Si 0.780 3.220 12 H -0.219 1.219 13 H -0.238 1.238 14 H -0.182 1.182 15 N -0.329 5.329 16 C 0.328 3.672 17 O -0.483 6.483 18 C -0.203 4.203 19 H 0.138 0.862 20 C -0.138 4.138 21 C -0.079 4.079 22 H 0.132 0.868 23 C -0.109 4.109 24 C -0.190 4.190 25 N -0.256 5.256 26 C -0.092 4.092 27 N -0.162 5.162 28 H 0.274 0.726 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.009 0.991 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.243 0.757 39 H 0.149 0.851 40 H 0.133 0.867 41 H 0.188 0.812 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -9.381 0.714 10.023 13.747 hybrid contribution 1.004 0.340 -0.241 1.087 sum -8.377 1.053 9.782 12.922 Atomic orbital electron populations 1.22013 0.93572 1.02756 1.02029 1.21720 0.94254 0.96039 0.86730 0.94432 1.21402 0.83100 0.99523 0.94573 1.44149 1.00940 1.22026 1.66257 1.20485 0.92741 0.90002 0.93484 1.19425 0.95692 0.90701 1.31463 0.89926 1.25564 0.99774 0.98067 1.00840 1.70281 1.12249 1.23629 1.51944 0.85526 0.78733 0.80884 0.76829 1.21942 1.23834 1.18203 1.45692 1.64426 1.14341 1.08456 1.19832 0.76368 0.86117 0.84872 1.90575 1.54074 1.17476 1.86186 1.22286 1.05831 1.03881 0.88352 0.86175 1.23221 0.94361 1.00265 0.95926 1.20052 0.95529 0.98638 0.93686 0.86794 1.20338 0.99389 0.90725 1.00449 1.22217 0.97499 0.97635 1.01663 1.70247 1.19656 1.19292 1.16405 1.25756 0.96038 0.87008 1.00433 1.43179 1.27377 1.11498 1.34181 0.72588 0.94052 0.90212 0.90903 0.91189 0.90875 0.99061 0.96456 0.95254 0.95089 0.75745 0.85106 0.86676 0.81172 0.73487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.48 71.98 0.68 -3.23 16 2 C 0.12 4.29 2.88 44.99 0.13 4.42 16 3 H 0.04 1.63 7.58 -2.39 -0.02 1.61 16 4 C 0.14 5.01 5.36 86.38 0.46 5.47 16 5 N -0.61 -28.35 2.82 -726.94 -2.05 -30.40 16 6 C 0.18 8.77 9.02 127.77 1.15 9.92 16 7 C -0.24 -11.99 8.02 84.03 0.67 -11.32 16 8 H 0.08 3.80 7.86 -2.91 -0.02 3.77 16 9 C -0.05 -2.52 5.06 84.86 0.43 -2.09 16 10 N -0.93 -54.87 10.67 21.65 0.23 -54.63 16 11 Si 0.95 43.94 29.58 68.60 2.03 45.97 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 15 N -0.68 -25.27 4.49 -442.54 -1.99 -27.25 16 16 C 0.54 20.86 7.58 87.66 0.66 21.53 16 17 O -0.60 -26.72 15.92 -3.02 -0.05 -26.76 16 18 C -0.18 -5.73 5.71 -11.54 -0.07 -5.79 16 19 H 0.12 4.01 7.98 -2.39 -0.02 3.99 16 20 C -0.10 -2.26 9.76 30.59 0.30 -1.96 16 21 C -0.06 -1.64 5.84 -11.54 -0.07 -1.71 16 22 H 0.11 3.34 7.67 -2.38 -0.02 3.33 16 23 C 0.01 0.20 6.92 40.95 0.28 0.49 16 24 C -0.04 -1.30 10.94 83.52 0.91 -0.38 16 25 N -0.54 -16.38 11.25 -200.31 -2.25 -18.64 16 26 C 0.19 4.29 13.04 180.26 2.35 6.64 16 27 N -0.56 -12.34 6.15 -186.49 -1.15 -13.49 16 28 H 0.43 6.76 8.96 -92.71 -0.83 5.93 16 29 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.24 8.03 -2.38 -0.02 2.22 16 33 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 34 H -0.01 -0.51 7.40 -2.39 -0.02 -0.52 16 35 H 0.02 0.90 7.21 -2.39 -0.02 0.89 16 36 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 37 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.41 14.67 7.40 -92.71 -0.69 13.98 16 39 H 0.13 2.36 7.95 -2.39 -0.02 2.34 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -73.94 352.54 2.20 -71.73 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.48 Total: 31.50 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 7.91 Total: 21.97 kcal Atomic # 7 Polarization: -137.20 SS G_CDS: -7.21 Total: -144.41 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.94 2.20 -71.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.145 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds