Wall clock time and date at job start Tue Mar 31 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47048 * 2 1 4 4 C 1.53000 * 109.47080 * 120.00182 * 2 1 3 5 5 N 1.46499 * 109.47008 * 175.00052 * 4 2 1 6 6 C 1.46497 * 120.00090 * 269.99974 * 5 4 2 7 7 C 1.36931 * 120.00298 * 90.00039 * 5 4 2 8 8 H 1.08000 * 120.00191 * 213.04709 * 7 5 4 9 9 C 1.38820 * 120.00239 * 33.04008 * 7 5 4 10 10 N 1.31621 * 119.98996 * 29.36997 * 9 7 5 11 11 Si 1.86789 * 120.00460 * 209.37215 * 9 7 5 12 12 H 1.48503 * 109.47154 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47201 * 240.00257 * 11 9 7 14 14 H 1.48494 * 109.47417 * 120.00048 * 11 9 7 15 15 N 1.46494 * 109.47093 * 240.00182 * 2 1 3 16 16 C 1.34777 * 120.00055 * 84.99574 * 15 2 1 17 17 O 1.21279 * 119.99861 * 0.02562 * 16 15 2 18 18 C 1.50700 * 120.00015 * 179.97438 * 16 15 2 19 19 H 1.08998 * 115.55282 * 34.28384 * 18 16 15 20 20 C 1.53005 * 117.50328 * 248.61219 * 18 16 15 21 21 C 1.52999 * 117.49884 * 179.97438 * 18 16 15 22 22 H 1.09003 * 117.50139 * 0.02562 * 21 18 16 23 23 C 1.50697 * 117.50160 * 214.97996 * 21 18 16 24 24 C 1.34674 * 126.59341 * 325.02680 * 23 21 18 25 25 N 1.34126 * 108.02255 * 179.97438 * 24 23 21 26 26 C 1.30492 * 109.25754 * 0.02562 * 25 24 23 27 27 N 1.35047 * 108.70069 * 359.76157 * 26 25 24 28 28 H 0.97004 * 126.40172 * 180.27134 * 27 26 25 29 29 H 1.08999 * 109.46975 * 59.99614 * 1 2 3 30 30 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47216 * 299.99826 * 1 2 3 32 32 H 1.09001 * 109.47313 * 55.00116 * 4 2 1 33 33 H 1.09000 * 109.46713 * 294.99839 * 4 2 1 34 34 H 1.09003 * 109.47325 * 266.65743 * 6 5 4 35 35 H 1.09006 * 109.46924 * 26.65328 * 6 5 4 36 36 H 1.09002 * 109.47285 * 146.65233 * 6 5 4 37 37 H 0.97000 * 120.00890 * 6.57329 * 10 9 7 38 38 H 0.96998 * 120.00276 * 265.00253 * 15 2 1 39 39 H 1.09002 * 117.49385 * 0.02562 * 20 18 16 40 40 H 1.08995 * 117.49966 * 144.99667 * 20 18 16 41 41 H 1.08002 * 125.98707 * 359.96316 * 24 23 21 42 42 H 1.08001 * 125.65020 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5611 7 6 4.2799 0.1647 1.7240 8 1 5.2312 0.4051 1.2728 9 6 3.8476 0.8607 2.8446 10 7 3.0619 0.2727 3.7217 11 14 4.3808 2.6315 3.1076 12 1 5.2569 3.0564 1.9864 13 1 5.1278 2.7387 4.3867 14 1 3.1825 3.5069 3.1593 15 7 2.0183 -0.6905 -1.1961 16 6 2.1470 -0.0182 -2.3571 17 8 1.8589 1.1586 -2.4114 18 6 2.6498 -0.7284 -3.5875 19 1 2.3535 -1.7732 -3.6814 20 6 4.0315 -0.3359 -4.1148 21 6 2.7731 0.0895 -4.8746 22 1 2.4909 1.1415 -4.8314 23 6 2.4757 -0.6108 -6.1753 24 6 2.7413 -1.8969 -6.4737 25 7 2.3223 -2.1273 -7.7268 26 6 1.8076 -1.0327 -8.2166 27 7 1.8791 -0.0634 -7.2790 28 1 1.5671 0.8505 -7.3709 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 4.3365 -2.7454 1.3201 35 1 3.4500 -2.4079 -0.1861 36 1 5.0566 -1.6896 0.0810 37 1 2.8620 -0.6727 3.6369 38 1 2.2490 -1.6317 -1.1527 39 1 4.5769 0.4357 -3.5715 40 1 4.6441 -1.1224 -4.5554 41 1 3.2098 -2.6167 -5.8188 42 1 1.3895 -0.9217 -9.2062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:25 Heat of formation + Delta-G solvation = 66.692333 kcal Electronic energy + Delta-G solvation = -23473.981418 eV Core-core repulsion = 20070.584294 eV Total energy + Delta-G solvation = -3403.397124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29514 -39.73691 -37.23656 -36.06283 -34.08155 -32.71963 -31.14736 -30.76561 -29.35430 -26.28832 -25.40904 -24.60755 -23.43607 -21.83339 -21.72817 -20.67575 -20.15614 -19.69831 -18.27980 -17.39512 -16.93119 -15.69545 -15.17127 -15.00555 -14.71298 -14.41311 -14.26316 -13.95754 -13.70979 -13.64659 -13.43592 -13.14881 -12.59284 -12.39438 -12.17072 -12.03668 -11.49282 -11.31209 -11.16199 -10.92112 -10.76913 -10.68121 -10.58173 -10.24874 -10.22487 -10.20068 -10.07261 -9.55715 -9.43949 -8.56308 -8.45604 -8.38210 -6.88008 -6.09923 -3.36639 1.69797 2.75158 2.82482 2.94516 3.50761 3.53199 3.54284 3.67895 3.95101 4.36773 4.57078 4.59267 4.61404 4.79328 4.94361 5.07758 5.14514 5.18900 5.31368 5.44913 5.57870 5.67193 5.73222 5.87326 5.89375 5.97130 6.11170 6.11915 6.18483 6.30335 6.47632 6.52293 6.55462 6.63084 6.82476 6.96179 7.11055 7.20868 7.81313 7.96905 8.03199 8.51513 8.64056 9.05065 9.75988 10.18706 11.10014 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.003477 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.241478 B = 8051.216493 C = 8120.116898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.087 0.913 4 C 0.129 3.871 5 N -0.597 5.597 6 C 0.128 3.872 7 C -0.349 4.349 8 H 0.052 0.948 9 C -0.020 4.020 10 N -0.902 5.902 11 Si 1.060 2.940 12 H -0.291 1.291 13 H -0.294 1.294 14 H -0.288 1.288 15 N -0.698 5.698 16 C 0.540 3.460 17 O -0.550 6.550 18 C -0.169 4.169 19 H 0.125 0.875 20 C -0.129 4.129 21 C -0.062 4.062 22 H 0.124 0.876 23 C 0.018 3.982 24 C -0.026 4.026 25 N -0.493 5.493 26 C 0.180 3.820 27 N -0.565 5.565 28 H 0.421 0.579 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.096 0.904 34 H 0.003 0.997 35 H 0.023 0.977 36 H 0.034 0.966 37 H 0.268 0.732 38 H 0.394 0.606 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.169 0.831 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 -2.880 -18.707 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.320 5.320 6 C -0.018 4.018 7 C -0.478 4.478 8 H 0.070 0.930 9 C -0.222 4.222 10 N -0.542 5.542 11 Si 0.889 3.111 12 H -0.217 1.217 13 H -0.221 1.221 14 H -0.215 1.215 15 N -0.348 5.348 16 C 0.325 3.675 17 O -0.429 6.429 18 C -0.191 4.191 19 H 0.142 0.858 20 C -0.167 4.167 21 C -0.082 4.082 22 H 0.142 0.858 23 C -0.098 4.098 24 C -0.173 4.173 25 N -0.212 5.212 26 C -0.104 4.104 27 N -0.168 5.168 28 H 0.258 0.742 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.021 0.979 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.229 0.771 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.186 0.814 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.707 -1.540 -18.156 18.595 hybrid contribution 0.078 -0.670 -0.663 0.946 sum -3.630 -2.210 -18.819 19.292 Atomic orbital electron populations 1.22118 0.96594 1.01119 1.01863 1.21814 0.92034 0.99100 0.85465 0.89475 1.21312 0.84599 0.97471 0.96469 1.43773 1.00493 1.20171 1.67519 1.21103 0.96229 0.89733 0.94732 1.19881 1.04896 1.13485 1.09582 0.93010 1.25806 0.99788 1.05721 0.90927 1.70742 1.38644 1.13008 1.31791 0.83628 0.76111 0.76120 0.75209 1.21727 1.22106 1.21454 1.46042 1.65672 1.13729 1.09364 1.19437 0.77604 0.86704 0.83756 1.90659 1.51171 1.15944 1.85126 1.22421 1.02988 1.00561 0.93124 0.85759 1.23131 0.89239 1.03615 1.00745 1.20140 1.03169 0.99099 0.85746 0.85798 1.20381 1.04830 0.94936 0.89681 1.22039 1.06740 0.94246 0.94315 1.70278 1.15255 1.25920 1.09731 1.24957 1.04747 0.83988 0.96671 1.43202 1.46986 1.14072 1.12527 0.74166 0.93052 0.93251 0.91660 0.94932 0.88659 0.97911 0.95874 0.94767 0.92079 0.77089 0.87249 0.87281 0.81419 0.77542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 37.16 0.35 -2.28 16 2 C 0.12 2.38 2.88 -67.93 -0.20 2.18 16 3 H 0.09 2.03 7.58 -51.93 -0.39 1.64 16 4 C 0.13 2.78 4.51 -4.04 -0.02 2.76 16 5 N -0.60 -14.11 2.52 -181.12 -0.46 -14.57 16 6 C 0.13 2.52 10.27 59.85 0.61 3.14 16 7 C -0.35 -9.51 9.40 -15.06 -0.14 -9.65 16 8 H 0.05 1.46 7.98 -52.49 -0.42 1.04 16 9 C -0.02 -0.54 4.78 -17.43 -0.08 -0.63 16 10 N -0.90 -26.05 12.13 55.49 0.67 -25.38 16 11 Si 1.06 25.28 30.01 -169.99 -5.10 20.18 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.70 -11.67 4.52 -53.81 -0.24 -11.91 16 16 C 0.54 9.00 7.58 -10.99 -0.08 8.92 16 17 O -0.55 -11.17 15.92 5.56 0.09 -11.08 16 18 C -0.17 -2.08 5.71 -91.77 -0.52 -2.61 16 19 H 0.12 1.29 7.98 -51.93 -0.41 0.87 16 20 C -0.13 -1.42 9.76 -26.71 -0.26 -1.69 16 21 C -0.06 -0.70 5.84 -91.76 -0.54 -1.23 16 22 H 0.12 1.53 7.67 -51.93 -0.40 1.13 16 23 C 0.02 0.19 6.92 -81.60 -0.56 -0.38 16 24 C -0.03 -0.29 10.94 -17.81 -0.19 -0.49 16 25 N -0.49 -5.94 11.25 -14.66 -0.16 -6.11 16 26 C 0.18 1.58 13.04 -90.38 -1.18 0.40 16 27 N -0.56 -4.75 6.15 -10.30 -0.06 -4.81 16 28 H 0.42 2.31 8.96 -40.82 -0.37 1.94 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.10 2.37 5.34 -51.93 -0.28 2.09 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 35 H 0.02 0.37 5.71 -51.93 -0.30 0.07 16 36 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 37 H 0.27 7.78 7.36 -40.82 -0.30 7.48 16 38 H 0.39 5.80 6.18 -40.82 -0.25 5.55 16 39 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.11 0.99 7.95 -51.93 -0.41 0.57 16 41 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -33.77 350.60 -8.92 -42.69 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.12 Total: 7.25 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.81 Total: -1.55 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.26 Total: -62.78 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.10 Total: 20.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.77 -8.92 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.387 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds