Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47252 * 2 1 4 4 C 1.52997 * 109.47477 * 239.99811 * 2 1 3 5 5 N 1.46494 * 109.47366 * 185.00054 * 4 2 1 6 6 C 1.46494 * 119.99855 * 270.00012 * 5 4 2 7 7 C 1.36940 * 119.99835 * 90.00119 * 5 4 2 8 8 H 1.07997 * 120.00016 * 20.30129 * 7 5 4 9 9 C 1.38817 * 119.99685 * 200.29678 * 7 5 4 10 10 N 1.31614 * 119.99983 * 15.02145 * 9 7 5 11 11 Si 1.86797 * 119.99829 * 195.01911 * 9 7 5 12 12 H 1.48512 * 109.46983 * 85.01022 * 11 9 7 13 13 H 1.48494 * 109.47457 * 205.01068 * 11 9 7 14 14 H 1.48503 * 109.47157 * 325.01490 * 11 9 7 15 15 N 1.46500 * 109.46937 * 119.99982 * 2 1 3 16 16 C 1.34776 * 119.99869 * 275.00078 * 15 2 1 17 17 O 1.21607 * 120.00287 * 0.02562 * 16 15 2 18 18 C 1.47434 * 120.00194 * 180.02562 * 16 15 2 19 19 C 1.38051 * 126.41261 * 0.12471 * 18 16 15 20 20 N 1.34256 * 107.41359 * 180.25710 * 19 18 16 21 21 H 0.97003 * 125.74961 * 179.76835 * 20 19 18 22 22 N 1.39928 * 108.49686 * 359.77246 * 20 19 18 23 23 C 1.30452 * 108.89751 * 359.97438 * 22 20 19 24 24 C 1.50699 * 125.99289 * 179.97438 * 23 22 20 25 25 C 1.53000 * 117.49513 * 351.40600 * 24 23 22 26 26 C 1.52999 * 117.49607 * 60.02801 * 24 23 22 27 27 H 1.09007 * 109.47060 * 60.00377 * 1 2 3 28 28 H 1.09003 * 109.47440 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47628 * 299.99979 * 1 2 3 30 30 H 1.09005 * 109.47219 * 305.00553 * 4 2 1 31 31 H 1.09000 * 109.46614 * 64.99810 * 4 2 1 32 32 H 1.09005 * 109.47244 * 95.11168 * 6 5 4 33 33 H 1.09000 * 109.47314 * 215.10264 * 6 5 4 34 34 H 1.08999 * 109.47468 * 335.10363 * 6 5 4 35 35 H 0.97001 * 119.99813 * 180.02562 * 10 9 7 36 36 H 0.97001 * 120.00507 * 94.99756 * 15 2 1 37 37 H 1.08005 * 126.29043 * 0.02674 * 19 18 16 38 38 H 1.09002 * 115.56186 * 205.71995 * 24 23 22 39 39 H 1.09003 * 117.49576 * 214.97960 * 25 24 23 40 40 H 1.08997 * 117.50232 * 359.97438 * 25 24 23 41 41 H 1.08994 * 117.50169 * 359.97438 * 26 24 23 42 42 H 1.09001 * 117.49776 * 145.00063 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7611 7 6 4.0849 -1.9159 -0.6021 8 1 3.5228 -2.8298 -0.4788 9 6 5.4004 -1.8456 -0.1644 10 7 5.9903 -0.6759 -0.0380 11 14 6.3332 -3.4113 0.2453 12 1 6.9258 -3.9734 -0.9950 13 1 7.4147 -3.1037 1.2153 14 1 5.4007 -4.4016 0.8412 15 7 2.0183 -0.6906 1.1962 16 6 2.1469 -0.0182 2.3571 17 8 1.8573 1.1616 2.4119 18 6 2.6389 -0.7130 3.5609 19 6 3.0061 -2.0409 3.6480 20 7 3.3874 -2.2701 4.9147 21 1 3.6947 -3.1191 5.2693 22 7 3.2666 -1.0779 5.6372 23 6 2.8254 -0.1439 4.8405 24 6 2.5554 1.2893 5.2201 25 6 2.6242 1.6517 6.7050 26 6 3.7299 2.1123 5.7531 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1369 32 1 4.6152 0.9371 -0.9769 33 1 5.2330 -0.2044 -2.1948 34 1 3.7755 0.7585 -2.5363 35 1 6.9096 -0.6269 0.2675 36 1 2.2489 -1.6318 1.1527 37 1 2.9865 -2.7636 2.8456 38 1 1.8147 1.8060 4.6097 39 1 1.9287 2.4068 7.0715 40 1 2.8643 0.8535 7.4073 41 1 4.6978 1.6170 5.8295 42 1 3.7622 3.1703 5.4930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754330215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = 82.311597 kcal Electronic energy + Delta-G solvation = -24338.955130 eV Core-core repulsion = 20936.235308 eV Total energy + Delta-G solvation = -3402.719822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.13216 -38.59399 -36.85194 -36.14032 -33.88343 -31.55778 -31.14360 -30.50187 -29.06104 -26.15952 -25.60370 -23.80429 -23.11124 -22.16377 -21.58456 -20.26939 -19.38459 -19.01836 -18.04107 -16.74890 -15.87294 -15.41426 -15.22386 -14.87581 -14.72064 -14.44070 -13.92460 -13.60817 -13.47201 -12.95870 -12.88796 -12.60513 -12.18523 -11.86253 -11.67934 -11.37597 -11.36520 -11.29700 -10.92099 -10.89835 -10.74877 -10.71007 -10.37919 -10.23938 -10.14980 -10.08212 -9.84125 -9.07494 -9.05009 -8.59288 -8.49668 -8.07696 -6.80943 -5.76048 -3.19756 1.85943 2.41282 2.90599 3.24669 3.33894 3.37655 3.97039 4.10338 4.30582 4.41408 4.63304 4.87261 5.18605 5.22328 5.29082 5.34264 5.49617 5.66911 5.73135 5.80088 5.82236 5.87820 6.01577 6.03230 6.06862 6.20247 6.29916 6.32040 6.46058 6.49634 6.58916 6.67937 6.76177 6.94597 7.30025 7.36851 7.42250 7.66736 7.77075 7.79401 8.33102 8.46261 9.12202 9.17738 9.83144 10.33129 11.27979 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.006445 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.672341 B = 4343.404802 C = 5412.510311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.256 4.256 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.288 1.288 13 H -0.293 1.293 14 H -0.282 1.282 15 N -0.687 5.687 16 C 0.596 3.404 17 O -0.562 6.562 18 C -0.266 4.266 19 C 0.110 3.890 20 N -0.466 5.466 21 H 0.441 0.559 22 N -0.307 5.307 23 C 0.161 3.839 24 C -0.075 4.075 25 C -0.173 4.173 26 C -0.159 4.159 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.041 0.959 34 H -0.003 1.003 35 H 0.252 0.748 36 H 0.399 0.601 37 H 0.186 0.814 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 -1.505 6.926 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.386 4.386 8 H 0.083 0.917 9 C -0.192 4.192 10 N -0.537 5.537 11 Si 0.724 3.276 12 H -0.215 1.215 13 H -0.220 1.220 14 H -0.208 1.208 15 N -0.335 5.335 16 C 0.383 3.617 17 O -0.442 6.442 18 C -0.281 4.281 19 C -0.042 4.042 20 N -0.171 5.171 21 H 0.285 0.715 22 N -0.129 5.129 23 C -0.006 4.006 24 C -0.095 4.095 25 C -0.210 4.210 26 C -0.197 4.197 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.062 0.938 36 H 0.234 0.766 37 H 0.203 0.797 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.642 -0.918 8.135 11.199 hybrid contribution 0.921 -1.746 -0.500 2.037 sum -6.721 -2.664 7.635 10.515 Atomic orbital electron populations 1.22161 0.97034 1.01120 1.01511 1.21772 0.91661 0.98435 0.86893 0.90496 1.21182 0.85861 0.97849 0.93743 1.43887 0.98943 1.22640 1.66518 1.20788 0.92832 0.90453 0.94060 1.19015 0.95867 0.89808 1.33912 0.91664 1.24924 0.98572 0.95922 0.99820 1.70081 1.12669 1.21604 1.49360 0.86478 0.80072 0.83160 0.77909 1.21463 1.21967 1.20764 1.45517 1.65620 1.13961 1.08418 1.17078 0.76739 0.85830 0.82049 1.90647 1.52748 1.15505 1.85313 1.20321 1.18096 0.93541 0.96128 1.23213 0.95053 0.97647 0.88323 1.45962 1.52409 1.11274 1.07462 0.71535 1.76972 1.25592 0.90883 1.19486 1.21375 0.94710 0.94245 0.90251 1.20482 1.03290 0.88798 0.96952 1.22993 1.02225 1.03470 0.92337 1.22932 0.93889 1.00055 1.02860 0.92406 0.93171 0.92862 0.93447 0.93016 0.95234 0.93978 0.98432 0.93772 0.76598 0.79708 0.84322 0.88574 0.88369 0.88866 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 2 C 0.12 2.23 2.88 -67.93 -0.20 2.03 16 3 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.67 5.36 -4.05 -0.02 2.64 16 5 N -0.60 -13.90 2.82 -181.13 -0.51 -14.41 16 6 C 0.16 3.94 9.02 59.84 0.54 4.48 16 7 C -0.26 -6.28 8.02 -15.06 -0.12 -6.40 16 8 H 0.07 1.52 7.86 -52.49 -0.41 1.10 16 9 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 10 N -0.89 -25.03 10.66 55.49 0.59 -24.44 16 11 Si 0.89 20.32 29.58 -169.99 -5.03 15.29 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 N -0.69 -13.10 4.48 -54.88 -0.25 -13.34 16 16 C 0.60 12.21 7.78 -12.52 -0.10 12.12 16 17 O -0.56 -12.75 14.65 5.27 0.08 -12.68 16 18 C -0.27 -4.93 6.13 -105.06 -0.64 -5.57 16 19 C 0.11 1.68 11.52 -16.56 -0.19 1.49 16 20 N -0.47 -6.48 7.29 30.85 0.22 -6.26 16 21 H 0.44 4.37 8.96 -182.72 -1.64 2.73 16 22 N -0.31 -5.07 12.22 33.90 0.41 -4.65 16 23 C 0.16 2.89 6.80 -82.02 -0.56 2.33 16 24 C -0.08 -1.23 5.66 -91.77 -0.52 -1.75 16 25 C -0.17 -2.26 10.14 -26.73 -0.27 -2.53 16 26 C -0.16 -2.30 10.23 -26.73 -0.27 -2.58 16 27 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.83 8.03 -51.93 -0.42 0.42 16 31 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 32 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 33 H 0.04 1.09 7.21 -51.93 -0.37 0.71 16 34 H 0.00 -0.06 7.83 -51.93 -0.41 -0.47 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.40 7.28 6.32 -40.82 -0.26 7.02 16 37 H 0.19 2.38 7.46 -52.48 -0.39 1.99 16 38 H 0.14 2.41 6.72 -51.93 -0.35 2.06 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.29 7.90 -51.93 -0.41 0.88 16 41 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -31.70 349.40 -8.81 -40.51 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -7.51 Total: 10.39 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.09 Total: 4.32 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 0.47 Total: -63.10 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.70 -8.81 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.824 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds