Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47252 * 2 1 4 4 C 1.52997 * 109.47477 * 239.99811 * 2 1 3 5 5 N 1.46494 * 109.47366 * 185.00054 * 4 2 1 6 6 C 1.46494 * 119.99855 * 270.00012 * 5 4 2 7 7 C 1.36940 * 119.99835 * 90.00119 * 5 4 2 8 8 H 1.07997 * 120.00016 * 20.30129 * 7 5 4 9 9 C 1.38817 * 119.99685 * 200.29678 * 7 5 4 10 10 N 1.31614 * 119.99983 * 15.02145 * 9 7 5 11 11 Si 1.86797 * 119.99829 * 195.01911 * 9 7 5 12 12 H 1.48512 * 109.46983 * 85.01022 * 11 9 7 13 13 H 1.48494 * 109.47457 * 205.01068 * 11 9 7 14 14 H 1.48503 * 109.47157 * 325.01490 * 11 9 7 15 15 N 1.46500 * 109.46937 * 119.99982 * 2 1 3 16 16 C 1.34776 * 119.99869 * 275.00078 * 15 2 1 17 17 O 1.21607 * 120.00287 * 0.02562 * 16 15 2 18 18 C 1.47434 * 120.00194 * 180.02562 * 16 15 2 19 19 C 1.38051 * 126.41261 * 0.12471 * 18 16 15 20 20 N 1.34256 * 107.41359 * 180.25710 * 19 18 16 21 21 H 0.97003 * 125.74961 * 179.76835 * 20 19 18 22 22 N 1.39928 * 108.49686 * 359.77246 * 20 19 18 23 23 C 1.30452 * 108.89751 * 359.97438 * 22 20 19 24 24 C 1.50699 * 125.99289 * 179.97438 * 23 22 20 25 25 C 1.53000 * 117.49513 * 351.40600 * 24 23 22 26 26 C 1.52999 * 117.49607 * 60.02801 * 24 23 22 27 27 H 1.09007 * 109.47060 * 60.00377 * 1 2 3 28 28 H 1.09003 * 109.47440 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47628 * 299.99979 * 1 2 3 30 30 H 1.09005 * 109.47219 * 305.00553 * 4 2 1 31 31 H 1.09000 * 109.46614 * 64.99810 * 4 2 1 32 32 H 1.09005 * 109.47244 * 95.11168 * 6 5 4 33 33 H 1.09000 * 109.47314 * 215.10264 * 6 5 4 34 34 H 1.08999 * 109.47468 * 335.10363 * 6 5 4 35 35 H 0.97001 * 119.99813 * 180.02562 * 10 9 7 36 36 H 0.97001 * 120.00507 * 94.99756 * 15 2 1 37 37 H 1.08005 * 126.29043 * 0.02674 * 19 18 16 38 38 H 1.09002 * 115.56186 * 205.71995 * 24 23 22 39 39 H 1.09003 * 117.49576 * 214.97960 * 25 24 23 40 40 H 1.08997 * 117.50232 * 359.97438 * 25 24 23 41 41 H 1.08994 * 117.50169 * 359.97438 * 26 24 23 42 42 H 1.09001 * 117.49776 * 145.00063 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7611 7 6 4.0849 -1.9159 -0.6021 8 1 3.5228 -2.8298 -0.4788 9 6 5.4004 -1.8456 -0.1644 10 7 5.9903 -0.6759 -0.0380 11 14 6.3332 -3.4113 0.2453 12 1 6.9258 -3.9734 -0.9950 13 1 7.4147 -3.1037 1.2153 14 1 5.4007 -4.4016 0.8412 15 7 2.0183 -0.6906 1.1962 16 6 2.1469 -0.0182 2.3571 17 8 1.8573 1.1616 2.4119 18 6 2.6389 -0.7130 3.5609 19 6 3.0061 -2.0409 3.6480 20 7 3.3874 -2.2701 4.9147 21 1 3.6947 -3.1191 5.2693 22 7 3.2666 -1.0779 5.6372 23 6 2.8254 -0.1439 4.8405 24 6 2.5554 1.2893 5.2201 25 6 2.6242 1.6517 6.7050 26 6 3.7299 2.1123 5.7531 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1369 32 1 4.6152 0.9371 -0.9769 33 1 5.2330 -0.2044 -2.1948 34 1 3.7755 0.7585 -2.5363 35 1 6.9096 -0.6269 0.2675 36 1 2.2489 -1.6318 1.1527 37 1 2.9865 -2.7636 2.8456 38 1 1.8147 1.8060 4.6097 39 1 1.9287 2.4068 7.0715 40 1 2.8643 0.8535 7.4073 41 1 4.6978 1.6170 5.8295 42 1 3.7622 3.1703 5.4930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754330215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = 61.522793 kcal Electronic energy + Delta-G solvation = -24339.856600 eV Core-core repulsion = 20936.235308 eV Total energy + Delta-G solvation = -3403.621292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.40257 -40.13289 -38.06055 -37.79836 -35.58363 -33.24019 -32.43394 -32.07659 -30.42565 -27.99628 -27.30681 -25.02560 -24.53981 -23.35125 -23.20892 -21.75025 -20.89036 -20.27876 -19.37189 -18.58767 -17.37348 -16.88797 -16.59913 -16.48405 -16.07846 -15.69846 -15.52857 -15.18621 -15.01085 -14.62258 -14.46860 -13.95311 -13.80496 -13.28163 -13.06968 -12.94733 -12.79354 -12.68127 -12.48335 -12.43289 -12.16159 -12.10152 -11.94485 -11.91474 -11.87302 -11.61283 -11.35133 -10.61951 -10.54405 -10.26066 -9.92174 -9.52349 -8.73161 -7.71698 -5.16759 0.59410 1.06129 1.45730 1.52823 1.58452 1.79055 2.48927 2.57102 2.71965 3.04567 3.41293 3.44485 3.65676 3.78077 4.02657 4.06099 4.15351 4.22333 4.42938 4.48085 4.54426 4.63506 4.71453 4.73893 4.82293 4.89798 4.92983 4.98768 5.07771 5.20125 5.26213 5.27484 5.36689 5.38270 5.48777 5.70769 5.77831 5.91341 6.25371 6.38491 6.51684 6.95625 7.21377 7.60175 7.95782 8.42546 9.32007 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.006445 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.672341 B = 4343.404802 C = 5412.510311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.037 0.963 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.179 3.821 7 C -0.242 4.242 8 H 0.087 0.913 9 C -0.049 4.049 10 N -0.935 5.935 11 Si 0.950 3.050 12 H -0.297 1.297 13 H -0.313 1.313 14 H -0.247 1.247 15 N -0.684 5.684 16 C 0.588 3.412 17 O -0.596 6.596 18 C -0.308 4.308 19 C 0.129 3.871 20 N -0.448 5.448 21 H 0.459 0.541 22 N -0.315 5.315 23 C 0.148 3.852 24 C -0.104 4.104 25 C -0.142 4.142 26 C -0.163 4.163 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.072 0.928 32 H -0.010 1.010 33 H 0.016 0.984 34 H 0.027 0.973 35 H 0.238 0.762 36 H 0.404 0.596 37 H 0.214 0.786 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 -3.722 7.180 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.056 0.944 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.033 3.967 7 C -0.372 4.372 8 H 0.105 0.895 9 C -0.244 4.244 10 N -0.582 5.582 11 Si 0.780 3.220 12 H -0.225 1.225 13 H -0.241 1.241 14 H -0.171 1.171 15 N -0.332 5.332 16 C 0.377 3.623 17 O -0.479 6.479 18 C -0.322 4.322 19 C -0.025 4.025 20 N -0.154 5.154 21 H 0.308 0.692 22 N -0.138 5.138 23 C -0.019 4.019 24 C -0.124 4.124 25 C -0.179 4.179 26 C -0.201 4.201 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.009 0.991 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.240 0.760 37 H 0.230 0.770 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.235 -3.200 8.399 12.886 hybrid contribution 1.350 -1.062 -0.630 1.830 sum -7.884 -4.262 7.768 11.861 Atomic orbital electron populations 1.22023 0.93907 1.02640 1.01880 1.21681 0.93992 0.96163 0.86623 0.94422 1.21391 0.83143 0.99526 0.94435 1.44150 1.00879 1.22054 1.66228 1.20474 0.92698 0.90066 0.93454 1.19468 0.95671 0.90662 1.31409 0.89522 1.25608 0.99803 0.98042 1.00982 1.70300 1.12100 1.23836 1.51938 0.85540 0.78814 0.80869 0.76813 1.22468 1.24140 1.17079 1.45513 1.65395 1.14049 1.08247 1.17442 0.76344 0.85618 0.82934 1.90614 1.54359 1.17003 1.85952 1.20385 1.20779 0.95217 0.95860 1.23521 0.92997 0.96866 0.89154 1.46000 1.50986 1.11498 1.06922 0.69224 1.76916 1.25820 0.91410 1.19662 1.21619 0.94895 0.95057 0.90349 1.20467 1.04145 0.88626 0.99206 1.23056 1.01114 1.03372 0.90329 1.22982 0.93309 1.00325 1.03463 0.90223 0.90968 0.94355 0.91019 0.91000 0.99123 0.96490 0.95406 0.95238 0.76038 0.76952 0.86141 0.86013 0.88169 0.89925 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.48 71.98 0.68 -3.37 16 2 C 0.12 4.42 2.88 44.99 0.13 4.55 16 3 H 0.04 1.65 7.58 -2.39 -0.02 1.64 16 4 C 0.14 4.96 5.36 86.38 0.46 5.42 16 5 N -0.61 -27.67 2.82 -726.96 -2.05 -29.72 16 6 C 0.18 8.70 9.02 127.77 1.15 9.86 16 7 C -0.24 -11.42 8.02 84.03 0.67 -10.75 16 8 H 0.09 3.69 7.86 -2.91 -0.02 3.67 16 9 C -0.05 -2.53 5.06 84.86 0.43 -2.10 16 10 N -0.93 -53.88 10.66 21.65 0.23 -53.65 16 11 Si 0.95 41.07 29.58 68.60 2.03 43.10 16 12 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 14 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 15 N -0.68 -25.58 4.48 -445.80 -2.00 -27.57 16 16 C 0.59 24.50 7.78 86.67 0.67 25.17 16 17 O -0.60 -28.25 14.65 -4.05 -0.06 -28.31 16 18 C -0.31 -11.37 6.13 -20.15 -0.12 -11.49 16 19 C 0.13 3.69 11.52 84.28 0.97 4.66 16 20 N -0.45 -11.49 7.29 -56.31 -0.41 -11.90 16 21 H 0.46 7.77 8.96 -213.43 -1.91 5.85 16 22 N -0.32 -10.09 12.22 -46.67 -0.57 -10.66 16 23 C 0.15 5.30 6.80 43.51 0.30 5.59 16 24 C -0.10 -3.47 5.66 -11.54 -0.07 -3.54 16 25 C -0.14 -3.56 10.14 30.60 0.31 -3.25 16 26 C -0.16 -4.73 10.23 30.60 0.31 -4.42 16 27 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 2.21 8.03 -2.38 -0.02 2.19 16 31 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 32 H -0.01 -0.54 7.40 -2.38 -0.02 -0.56 16 33 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 34 H 0.03 1.15 7.83 -2.39 -0.02 1.13 16 35 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.40 13.93 6.32 -92.71 -0.59 13.34 16 37 H 0.21 4.75 7.46 -2.91 -0.02 4.73 16 38 H 0.12 4.41 6.72 -2.39 -0.02 4.39 16 39 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.10 2.49 7.90 -2.39 -0.02 2.47 16 41 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -71.22 349.40 1.63 -69.60 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -1.45 Total: 32.74 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 5.91 Total: 16.36 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -4.79 Total: -133.49 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.06 Total: -28.31 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -71.22 1.63 -69.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.120 kcal (2) G-P(sol) polarization free energy of solvation -71.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds