Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47587 * 2 1 4 4 C 1.53000 * 109.46604 * 120.00035 * 2 1 3 5 5 N 1.46504 * 109.46843 * 174.99711 * 4 2 1 6 6 C 1.46498 * 120.00244 * 269.99601 * 5 4 2 7 7 C 1.36938 * 119.99748 * 89.99845 * 5 4 2 8 8 H 1.08001 * 120.00447 * 23.64545 * 7 5 4 9 9 C 1.38817 * 119.99814 * 203.64158 * 7 5 4 10 10 N 1.31615 * 120.00026 * 11.27828 * 9 7 5 11 11 Si 1.86797 * 119.99993 * 191.27517 * 9 7 5 12 12 H 1.48504 * 109.47194 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47068 * 120.00072 * 11 9 7 14 14 H 1.48500 * 109.47253 * 240.00251 * 11 9 7 15 15 N 1.46501 * 109.46738 * 239.99501 * 2 1 3 16 16 C 1.34773 * 119.99957 * 85.00864 * 15 2 1 17 17 O 1.21602 * 120.00125 * 359.97438 * 16 15 2 18 18 C 1.47427 * 120.00076 * 179.97438 * 16 15 2 19 19 C 1.38047 * 126.41445 * 0.02717 * 18 16 15 20 20 N 1.34253 * 107.41730 * 179.97438 * 19 18 16 21 21 H 0.97001 * 125.75536 * 179.97438 * 20 19 18 22 22 N 1.39938 * 108.49472 * 359.78600 * 20 19 18 23 23 C 1.30450 * 108.89391 * 0.36303 * 22 20 19 24 24 C 1.50694 * 125.98920 * 179.90730 * 23 22 20 25 25 C 1.53005 * 117.49907 * 299.69056 * 24 23 22 26 26 C 1.53007 * 60.03143 * 107.47891 * 25 24 23 27 27 H 1.08998 * 109.47239 * 300.00740 * 1 2 3 28 28 H 1.09002 * 109.46528 * 60.00141 * 1 2 3 29 29 H 1.08993 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47162 * 294.99283 * 4 2 1 31 31 H 1.09001 * 109.47816 * 54.99653 * 4 2 1 32 32 H 1.09001 * 109.47023 * 94.57662 * 6 5 4 33 33 H 1.08991 * 109.47504 * 214.58178 * 6 5 4 34 34 H 1.09007 * 109.46977 * 334.57898 * 6 5 4 35 35 H 0.96994 * 120.00173 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99933 * 265.00133 * 15 2 1 37 37 H 1.07997 * 126.29036 * 359.95248 * 19 18 16 38 38 H 1.08995 * 115.56408 * 154.00347 * 24 23 22 39 39 H 1.09001 * 117.49858 * 214.97417 * 25 24 23 40 40 H 1.09000 * 117.49805 * 359.97438 * 25 24 23 41 41 H 1.08993 * 117.49819 * 107.50269 * 26 25 24 42 42 H 1.08999 * 117.49558 * 252.52557 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5614 7 6 4.2798 0.1647 1.7241 8 1 3.8836 0.8067 2.4969 9 6 5.5798 0.3444 1.2715 10 7 5.9916 -0.2795 0.1883 11 14 6.7445 1.4717 2.1998 12 1 6.0435 2.0485 3.3750 13 1 7.9237 0.6949 2.6597 14 1 7.1926 2.5674 1.3032 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0185 -2.3571 17 8 1.8577 1.1613 -2.4119 18 6 2.6390 -0.7134 -3.5607 19 6 3.0033 -2.0420 -3.6484 20 7 3.3905 -2.2698 -4.9136 21 1 3.7008 -3.1181 -5.2674 22 7 3.2669 -1.0783 -5.6370 23 6 2.8252 -0.1444 -4.8405 24 6 2.5547 1.2885 -5.2204 25 6 3.7305 2.1139 -5.7468 26 6 2.6308 1.6524 -6.7054 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7516 -0.1583 2.1369 31 1 1.6053 -1.7198 1.2953 32 1 4.3539 -1.7642 -0.4798 33 1 5.0466 -2.2395 1.0894 34 1 3.4422 -2.8400 0.6063 35 1 6.8998 -0.1537 -0.1282 36 1 2.2489 -1.6319 -1.1525 37 1 2.9812 -2.7652 -2.8467 38 1 1.8102 1.8035 -4.6134 39 1 3.7595 3.1719 -5.4862 40 1 4.6999 1.6205 -5.8180 41 1 1.9364 2.4068 -7.0752 42 1 2.8766 0.8552 -7.4068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754330216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = 83.342925 kcal Electronic energy + Delta-G solvation = -24150.833845 eV Core-core repulsion = 20748.158745 eV Total energy + Delta-G solvation = -3402.675100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23428 -38.69258 -36.89087 -36.16566 -33.91266 -31.54859 -31.21988 -30.55929 -29.19445 -26.16836 -25.57536 -23.87346 -23.21680 -22.18839 -21.52316 -20.35444 -19.52997 -19.09419 -18.11791 -16.74186 -16.04825 -15.45979 -15.22114 -14.89521 -14.72899 -14.51242 -13.97174 -13.59897 -13.45209 -13.14726 -12.92032 -12.66457 -12.11479 -11.92867 -11.73102 -11.40723 -11.38990 -11.09496 -10.95665 -10.83791 -10.78212 -10.73746 -10.52873 -10.21209 -10.16461 -9.92030 -9.83344 -9.16012 -9.12899 -8.62129 -8.53087 -8.19473 -6.71885 -5.70931 -3.16487 1.74209 2.33147 2.80706 3.39934 3.47714 3.49245 3.87547 4.01947 4.22910 4.52795 4.54919 4.78153 5.05680 5.18408 5.24911 5.37497 5.52175 5.59323 5.66154 5.77423 5.79224 5.81861 5.96299 6.01355 6.05886 6.14589 6.29316 6.30077 6.42519 6.52322 6.56035 6.57810 6.66651 6.96371 7.20036 7.27771 7.34211 7.64682 7.67669 7.83007 8.29348 8.41267 9.01270 9.25120 9.87584 10.35638 11.34327 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.005328 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.201482 B = 5254.387277 C = 5832.931087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.697 5.697 16 C 0.596 3.404 17 O -0.552 6.552 18 C -0.266 4.266 19 C 0.105 3.895 20 N -0.465 5.465 21 H 0.441 0.559 22 N -0.305 5.305 23 C 0.164 3.836 24 C -0.077 4.077 25 C -0.158 4.158 26 C -0.172 4.172 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.042 0.958 34 H -0.007 1.007 35 H 0.250 0.750 36 H 0.390 0.610 37 H 0.184 0.816 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -5.217 -8.982 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.384 4.384 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.732 3.268 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.346 5.346 16 C 0.383 3.617 17 O -0.431 6.431 18 C -0.281 4.281 19 C -0.047 4.047 20 N -0.169 5.169 21 H 0.285 0.715 22 N -0.127 5.127 23 C -0.004 4.004 24 C -0.097 4.097 25 C -0.196 4.196 26 C -0.210 4.210 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.011 0.989 35 H 0.060 0.940 36 H 0.223 0.777 37 H 0.201 0.799 38 H 0.157 0.843 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.958 -4.674 -10.218 13.769 hybrid contribution 0.981 -0.278 1.154 1.539 sum -6.977 -4.952 -9.065 12.465 Atomic orbital electron populations 1.22156 0.97024 1.00946 1.01653 1.21820 0.91523 0.99218 0.86261 0.89589 1.21201 0.85757 0.97137 0.94465 1.43868 0.99070 1.20811 1.68136 1.20841 0.94463 0.85060 0.97927 1.19201 0.94505 1.10554 1.14169 0.91409 1.25011 0.98916 0.99034 0.96324 1.70032 1.17050 1.45659 1.22029 0.86223 0.81045 0.80317 0.79182 1.20331 1.21789 1.21775 1.45589 1.66573 1.13266 1.09123 1.17072 0.76786 0.85915 0.81911 1.90671 1.51980 1.15356 1.85074 1.20348 1.18038 0.93513 0.96198 1.23116 0.95624 0.97426 0.88503 1.45959 1.52098 1.11413 1.07472 0.71462 1.77005 1.25482 0.90908 1.19330 1.21385 0.94539 0.94283 0.90154 1.20504 1.03393 0.88739 0.97093 1.22941 0.93888 1.00107 1.02713 1.23008 1.02299 1.03476 0.92179 0.92219 0.92897 0.93357 0.92351 0.94155 0.95041 0.93958 0.98869 0.94015 0.77666 0.79917 0.84315 0.88137 0.88823 0.88531 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.23 2.88 -67.93 -0.20 2.03 16 3 H 0.09 1.96 7.58 -51.93 -0.39 1.56 16 4 C 0.14 2.72 5.33 -4.04 -0.02 2.69 16 5 N -0.60 -14.09 2.78 -181.12 -0.50 -14.59 16 6 C 0.16 3.63 7.61 59.85 0.46 4.09 16 7 C -0.25 -6.85 9.66 -15.06 -0.15 -7.00 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -25.86 10.66 55.49 0.59 -25.26 16 11 Si 0.90 22.11 29.57 -169.99 -5.03 17.09 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 N -0.70 -12.66 4.40 -54.88 -0.24 -12.90 16 16 C 0.60 11.83 7.78 -12.52 -0.10 11.74 16 17 O -0.55 -12.49 14.66 5.28 0.08 -12.42 16 18 C -0.27 -4.62 6.13 -105.07 -0.64 -5.26 16 19 C 0.11 1.41 11.52 -16.56 -0.19 1.22 16 20 N -0.46 -5.70 7.29 30.85 0.22 -5.48 16 21 H 0.44 3.59 8.96 -182.72 -1.64 1.95 16 22 N -0.30 -4.72 12.21 33.89 0.41 -4.30 16 23 C 0.16 2.79 6.80 -82.02 -0.56 2.23 16 24 C -0.08 -1.23 5.66 -91.73 -0.52 -1.75 16 25 C -0.16 -2.26 10.23 -26.72 -0.27 -2.53 16 26 C -0.17 -2.19 10.14 -26.69 -0.27 -2.46 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 31 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 32 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 33 H 0.04 1.06 7.30 -51.93 -0.38 0.68 16 34 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.39 6.32 6.09 -40.82 -0.25 6.07 16 37 H 0.18 1.82 7.46 -52.49 -0.39 1.43 16 38 H 0.14 2.37 6.73 -51.93 -0.35 2.02 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.10 1.25 7.90 -51.93 -0.41 0.84 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -33.63 348.90 -8.89 -42.51 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.48 Total: 7.08 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.20 Total: 3.02 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.49 Total: -62.54 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.63 -8.89 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.856 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds