Wall clock time and date at job start Tue Mar 31 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47587 * 2 1 4 4 C 1.53000 * 109.46604 * 120.00035 * 2 1 3 5 5 N 1.46504 * 109.46843 * 174.99711 * 4 2 1 6 6 C 1.46498 * 120.00244 * 269.99601 * 5 4 2 7 7 C 1.36938 * 119.99748 * 89.99845 * 5 4 2 8 8 H 1.08001 * 120.00447 * 23.64545 * 7 5 4 9 9 C 1.38817 * 119.99814 * 203.64158 * 7 5 4 10 10 N 1.31615 * 120.00026 * 11.27828 * 9 7 5 11 11 Si 1.86797 * 119.99993 * 191.27517 * 9 7 5 12 12 H 1.48504 * 109.47194 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47068 * 120.00072 * 11 9 7 14 14 H 1.48500 * 109.47253 * 240.00251 * 11 9 7 15 15 N 1.46501 * 109.46738 * 239.99501 * 2 1 3 16 16 C 1.34773 * 119.99957 * 85.00864 * 15 2 1 17 17 O 1.21602 * 120.00125 * 359.97438 * 16 15 2 18 18 C 1.47427 * 120.00076 * 179.97438 * 16 15 2 19 19 C 1.38047 * 126.41445 * 0.02717 * 18 16 15 20 20 N 1.34253 * 107.41730 * 179.97438 * 19 18 16 21 21 H 0.97001 * 125.75536 * 179.97438 * 20 19 18 22 22 N 1.39938 * 108.49472 * 359.78600 * 20 19 18 23 23 C 1.30450 * 108.89391 * 0.36303 * 22 20 19 24 24 C 1.50694 * 125.98920 * 179.90730 * 23 22 20 25 25 C 1.53005 * 117.49907 * 299.69056 * 24 23 22 26 26 C 1.53007 * 60.03143 * 107.47891 * 25 24 23 27 27 H 1.08998 * 109.47239 * 300.00740 * 1 2 3 28 28 H 1.09002 * 109.46528 * 60.00141 * 1 2 3 29 29 H 1.08993 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47162 * 294.99283 * 4 2 1 31 31 H 1.09001 * 109.47816 * 54.99653 * 4 2 1 32 32 H 1.09001 * 109.47023 * 94.57662 * 6 5 4 33 33 H 1.08991 * 109.47504 * 214.58178 * 6 5 4 34 34 H 1.09007 * 109.46977 * 334.57898 * 6 5 4 35 35 H 0.96994 * 120.00173 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99933 * 265.00133 * 15 2 1 37 37 H 1.07997 * 126.29036 * 359.95248 * 19 18 16 38 38 H 1.08995 * 115.56408 * 154.00347 * 24 23 22 39 39 H 1.09001 * 117.49858 * 214.97417 * 25 24 23 40 40 H 1.09000 * 117.49805 * 359.97438 * 25 24 23 41 41 H 1.08993 * 117.49819 * 107.50269 * 26 25 24 42 42 H 1.08999 * 117.49558 * 252.52557 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5614 7 6 4.2798 0.1647 1.7241 8 1 3.8836 0.8067 2.4969 9 6 5.5798 0.3444 1.2715 10 7 5.9916 -0.2795 0.1883 11 14 6.7445 1.4717 2.1998 12 1 6.0435 2.0485 3.3750 13 1 7.9237 0.6949 2.6597 14 1 7.1926 2.5674 1.3032 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0185 -2.3571 17 8 1.8577 1.1613 -2.4119 18 6 2.6390 -0.7134 -3.5607 19 6 3.0033 -2.0420 -3.6484 20 7 3.3905 -2.2698 -4.9136 21 1 3.7008 -3.1181 -5.2674 22 7 3.2669 -1.0783 -5.6370 23 6 2.8252 -0.1444 -4.8405 24 6 2.5547 1.2885 -5.2204 25 6 3.7305 2.1139 -5.7468 26 6 2.6308 1.6524 -6.7054 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7516 -0.1583 2.1369 31 1 1.6053 -1.7198 1.2953 32 1 4.3539 -1.7642 -0.4798 33 1 5.0466 -2.2395 1.0894 34 1 3.4422 -2.8400 0.6063 35 1 6.8998 -0.1537 -0.1282 36 1 2.2489 -1.6319 -1.1525 37 1 2.9812 -2.7652 -2.8467 38 1 1.8102 1.8035 -4.6134 39 1 3.7595 3.1719 -5.4862 40 1 4.6999 1.6205 -5.8180 41 1 1.9364 2.4068 -7.0752 42 1 2.8766 0.8552 -7.4068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754330216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:15 Heat of formation + Delta-G solvation = 60.626706 kcal Electronic energy + Delta-G solvation = -24151.818894 eV Core-core repulsion = 20748.158745 eV Total energy + Delta-G solvation = -3403.660149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40721 -40.18371 -38.06794 -37.80666 -35.63402 -33.19614 -32.44815 -32.16520 -30.48511 -27.92046 -27.34597 -25.03488 -24.58386 -23.32145 -23.16203 -21.82831 -20.95687 -20.29005 -19.34624 -18.69326 -17.44060 -16.94204 -16.60032 -16.46638 -16.08815 -15.71398 -15.51073 -15.24107 -15.03267 -14.73578 -14.45231 -13.97070 -13.69474 -13.36106 -13.04407 -12.95797 -12.81914 -12.62382 -12.48355 -12.43907 -12.24655 -12.14823 -11.98208 -11.92962 -11.78231 -11.63720 -11.35659 -10.67597 -10.58541 -10.25749 -9.96058 -9.58105 -8.65613 -7.78688 -5.23563 0.60173 1.05313 1.42909 1.46347 1.54153 1.80732 2.45012 2.54038 2.66937 3.03466 3.35899 3.41579 3.65148 3.78383 4.01717 4.05651 4.14328 4.22950 4.42150 4.46234 4.50842 4.62322 4.70951 4.73259 4.83975 4.89825 4.92278 4.98441 5.07351 5.19128 5.25452 5.28585 5.37223 5.42699 5.47010 5.69943 5.82576 5.88146 6.28112 6.38767 6.52072 6.88458 7.22950 7.56154 7.95778 8.35105 9.23097 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.005328 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.201482 B = 5254.387277 C = 5832.931087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.125 3.875 3 H 0.034 0.966 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.173 3.827 7 C -0.256 4.256 8 H 0.065 0.935 9 C -0.048 4.048 10 N -0.926 5.926 11 Si 0.954 3.046 12 H -0.267 1.267 13 H -0.290 1.290 14 H -0.303 1.303 15 N -0.690 5.690 16 C 0.588 3.412 17 O -0.594 6.594 18 C -0.311 4.311 19 C 0.133 3.867 20 N -0.444 5.444 21 H 0.461 0.539 22 N -0.316 5.316 23 C 0.148 3.852 24 C -0.105 4.105 25 C -0.164 4.164 26 C -0.141 4.141 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.015 0.985 33 H 0.008 0.992 34 H 0.040 0.960 35 H 0.241 0.759 36 H 0.401 0.599 37 H 0.222 0.778 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 -7.121 -9.006 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 H 0.053 0.947 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.028 3.972 7 C -0.386 4.386 8 H 0.083 0.917 9 C -0.244 4.244 10 N -0.573 5.573 11 Si 0.784 3.216 12 H -0.192 1.192 13 H -0.217 1.217 14 H -0.231 1.231 15 N -0.339 5.339 16 C 0.377 3.623 17 O -0.476 6.476 18 C -0.326 4.326 19 C -0.021 4.021 20 N -0.151 5.151 21 H 0.310 0.690 22 N -0.139 5.139 23 C -0.019 4.019 24 C -0.126 4.126 25 C -0.202 4.202 26 C -0.178 4.178 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.237 0.763 37 H 0.238 0.762 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.138 0.862 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.012 -6.629 -10.241 15.167 hybrid contribution 1.251 0.252 1.184 1.741 sum -7.761 -6.376 -9.057 13.525 Atomic orbital electron populations 1.22016 0.93844 1.02799 1.01728 1.21633 0.93892 0.96412 0.86355 0.94739 1.21373 0.83214 0.99318 0.94484 1.44084 1.00860 1.20450 1.67956 1.20660 0.94248 0.86109 0.96182 1.19471 0.94927 1.10562 1.13682 0.91710 1.25624 1.00465 1.00879 0.97400 1.70175 1.16659 1.47154 1.23267 0.85394 0.79479 0.78499 0.78252 1.19188 1.21680 1.23094 1.45511 1.66241 1.13652 1.08516 1.17505 0.76256 0.85644 0.82924 1.90637 1.53923 1.17221 1.85836 1.20351 1.21195 0.95452 0.95604 1.23548 0.92732 0.96478 0.89347 1.45999 1.50524 1.11517 1.07015 0.69008 1.76940 1.25778 0.91566 1.19611 1.21569 0.94946 0.94925 0.90458 1.20471 1.03992 0.88868 0.99228 1.22979 0.93445 1.00230 1.03571 1.23064 1.01068 1.03364 0.90289 0.90647 0.94378 0.90486 0.92000 0.90316 0.96718 0.97286 0.94143 0.94939 0.76341 0.76164 0.86399 0.87373 0.89759 0.86162 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.48 71.98 0.68 -3.40 16 2 C 0.12 4.56 2.88 44.99 0.13 4.69 16 3 H 0.03 1.62 7.58 -2.39 -0.02 1.60 16 4 C 0.14 5.11 5.33 86.38 0.46 5.57 16 5 N -0.61 -28.13 2.78 -726.93 -2.02 -30.15 16 6 C 0.17 7.47 7.61 127.77 0.97 8.44 16 7 C -0.26 -13.75 9.66 84.03 0.81 -12.94 16 8 H 0.07 3.45 7.85 -2.91 -0.02 3.43 16 9 C -0.05 -2.69 5.13 84.86 0.44 -2.26 16 10 N -0.93 -53.84 10.66 21.65 0.23 -53.61 16 11 Si 0.95 46.08 29.57 68.60 2.03 48.11 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 15 N -0.69 -24.51 4.40 -445.81 -1.96 -26.47 16 16 C 0.59 23.77 7.78 86.66 0.67 24.44 16 17 O -0.59 -28.29 14.66 -4.04 -0.06 -28.35 16 18 C -0.31 -10.75 6.13 -20.15 -0.12 -10.87 16 19 C 0.13 3.27 11.52 84.28 0.97 4.24 16 20 N -0.44 -9.87 7.29 -56.32 -0.41 -10.28 16 21 H 0.46 6.08 8.96 -213.42 -1.91 4.16 16 22 N -0.32 -9.45 12.21 -46.68 -0.57 -10.02 16 23 C 0.15 5.07 6.80 43.51 0.30 5.37 16 24 C -0.11 -3.46 5.66 -11.51 -0.07 -3.53 16 25 C -0.16 -4.77 10.23 30.60 0.31 -4.46 16 26 C -0.14 -3.49 10.14 30.62 0.31 -3.18 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 31 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 32 H 0.01 0.68 6.90 -2.39 -0.02 0.67 16 33 H 0.01 0.42 7.30 -2.39 -0.02 0.40 16 34 H 0.04 1.35 7.84 -2.38 -0.02 1.33 16 35 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.40 12.05 6.09 -92.71 -0.56 11.48 16 37 H 0.22 3.54 7.46 -2.91 -0.02 3.51 16 38 H 0.12 4.32 6.73 -2.39 -0.02 4.30 16 39 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.10 2.47 7.90 -2.39 -0.02 2.45 16 Total: -1.00 -76.00 348.90 1.67 -74.33 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -1.43 Total: 24.33 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.87 Total: 12.11 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -4.73 Total: -130.53 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.00 1.67 -74.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.958 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds