Wall clock time and date at job start Tue Mar 31 2020 07:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 C 1.53001 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46934 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47334 * 294.99713 * 5 4 3 7 7 C 1.52998 * 109.47653 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47310 * 59.99898 * 7 6 5 9 9 C 1.50695 * 109.47115 * 180.02562 * 8 7 6 10 10 O 1.21289 * 120.00490 * 28.47473 * 9 8 7 11 11 N 1.34780 * 119.99416 * 208.47184 * 9 8 7 12 12 C 1.37100 * 119.99593 * 185.12299 * 11 9 8 13 13 H 1.07997 * 120.00038 * 21.20541 * 12 11 9 14 14 C 1.38948 * 120.00203 * 201.20274 * 12 11 9 15 15 N 1.31418 * 119.99739 * 11.10981 * 14 12 11 16 16 Si 1.86796 * 120.00354 * 191.11504 * 14 12 11 17 17 H 1.48503 * 109.47440 * 89.99871 * 16 14 12 18 18 H 1.48498 * 109.47309 * 209.99811 * 16 14 12 19 19 H 1.48494 * 109.47096 * 329.99791 * 16 14 12 20 20 C 1.46495 * 120.00285 * 5.12965 * 11 9 8 21 21 C 1.47202 * 109.47119 * 83.86520 * 20 11 9 22 22 N 9.40982 * 130.14917 * 318.51825 * 2 1 3 23 23 C 1.53002 * 109.46720 * 300.00411 * 8 7 6 24 24 C 1.52997 * 109.47246 * 59.99952 * 23 8 7 25 25 H 1.08997 * 109.47317 * 300.00554 * 1 2 3 26 26 H 1.09011 * 109.46989 * 59.99859 * 1 2 3 27 27 H 1.09001 * 109.47604 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46807 * 239.99482 * 2 1 3 29 29 H 1.09003 * 109.46603 * 119.99689 * 2 1 3 30 30 H 1.09006 * 109.47197 * 59.99707 * 3 2 1 31 31 H 1.08995 * 109.47149 * 299.99757 * 3 2 1 32 32 H 1.09003 * 109.46787 * 299.99572 * 4 3 2 33 33 H 1.08997 * 109.47508 * 59.99558 * 4 3 2 34 34 H 1.09003 * 109.47445 * 54.99637 * 5 4 3 35 35 H 1.08995 * 109.47392 * 300.00454 * 6 5 4 36 36 H 1.09002 * 109.47185 * 59.99929 * 6 5 4 37 37 H 1.09003 * 109.47116 * 299.99918 * 7 6 5 38 38 H 1.09004 * 109.47440 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.46514 * 59.99972 * 8 7 6 40 40 H 0.96997 * 119.99557 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47068 * 203.86186 * 20 11 9 42 42 H 1.09000 * 109.47361 * 323.86830 * 20 11 9 43 43 H 1.08998 * 109.47343 * 299.99875 * 23 8 7 44 44 H 1.09002 * 109.46594 * 179.97438 * 23 8 7 45 45 H 1.09000 * 109.47373 * 179.97438 * 24 23 8 46 46 H 1.09003 * 109.47445 * 59.99868 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 3.6749 3.5696 -1.3067 7 6 4.1855 5.0119 -1.3064 8 6 5.7104 5.0132 -1.1816 9 6 6.2132 6.4338 -1.1807 10 8 5.5076 7.3266 -0.7611 11 7 7.4470 6.7121 -1.6461 12 6 7.9450 7.9858 -1.5490 13 1 7.5333 8.6728 -0.8245 14 6 8.9795 8.3927 -2.3826 15 7 9.3339 7.6445 -3.4032 16 14 9.8665 10.0032 -2.0526 17 1 11.0215 9.7568 -1.1523 18 1 10.3516 10.5730 -3.3353 19 1 8.9318 10.9601 -1.4080 20 6 8.2560 5.6538 -2.2558 21 6 7.8830 5.5054 -3.6720 22 7 7.5973 5.3884 -4.7642 23 6 6.1156 4.3283 0.1252 24 6 5.6050 2.8860 0.1248 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9337 0.9284 0.8892 33 1 3.9330 0.9286 -0.8908 34 1 3.6458 3.4234 0.8423 35 1 4.1091 3.0311 -2.1490 36 1 2.5885 3.5684 -1.3959 37 1 3.7515 5.5508 -0.4641 38 1 3.8964 5.4999 -2.2373 39 1 6.1442 4.4743 -2.0239 40 1 10.0558 7.9288 -3.9854 41 1 9.3115 5.9161 -2.1837 42 1 8.0785 4.7140 -1.7330 43 1 5.6816 4.8671 0.9675 44 1 7.2020 4.3288 0.2139 45 1 5.8940 2.3980 1.0556 46 1 6.0390 2.3472 -0.7175 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057684063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:33 Heat of formation + Delta-G solvation = -45.587545 kcal Electronic energy + Delta-G solvation = -23952.269300 eV Core-core repulsion = 20647.543698 eV Total energy + Delta-G solvation = -3304.725601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.66313 -37.95707 -35.84977 -35.36908 -34.28180 -32.33916 -31.56872 -30.53474 -28.43426 -27.37235 -25.22923 -23.93151 -22.54387 -21.55182 -20.79428 -19.78936 -18.70780 -17.84258 -16.57155 -16.12993 -15.65823 -15.20686 -14.61972 -14.21802 -14.18777 -14.07484 -13.84848 -13.48567 -13.22311 -12.95916 -12.84773 -12.60281 -12.30354 -12.09518 -11.95772 -11.76348 -11.56532 -11.45539 -11.30275 -11.17263 -11.11906 -10.97765 -10.86446 -10.74736 -10.56380 -10.49592 -10.39212 -10.35283 -10.17984 -9.98776 -9.69264 -9.22771 -8.43884 -7.99723 -6.44053 -4.01835 3.11850 3.22701 3.27021 3.59641 3.83071 4.05572 4.14445 4.53808 4.73165 4.77658 4.86319 4.91470 4.95873 5.04435 5.12854 5.24557 5.29673 5.40010 5.49879 5.52815 5.57393 5.64659 5.70678 5.71692 5.75764 5.78265 5.83776 5.85604 5.91879 5.99364 6.09734 6.13024 6.15223 6.19209 6.27973 6.34258 6.41656 6.47200 6.50823 6.64249 6.66922 6.78148 7.47545 7.95905 8.32581 8.79449 9.04173 9.23081 9.78805 10.60718 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.003333 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.428696 B = 8399.100342 C = 8702.498783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.097 4.097 8 C -0.102 4.102 9 C 0.464 3.536 10 O -0.573 6.573 11 N -0.448 5.448 12 C -0.305 4.305 13 H 0.105 0.895 14 C 0.028 3.972 15 N -0.889 5.889 16 Si 0.932 3.068 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.270 1.270 20 C 0.222 3.778 21 C 0.251 3.749 22 N -0.479 5.479 23 C -0.106 4.106 24 C -0.111 4.111 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.273 0.727 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 -14.384 7.980 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.106 4.106 6 C -0.150 4.150 7 C -0.135 4.135 8 C -0.124 4.124 9 C 0.253 3.747 10 O -0.455 6.455 11 N -0.168 5.168 12 C -0.432 4.432 13 H 0.123 0.877 14 C -0.174 4.174 15 N -0.530 5.530 16 Si 0.759 3.241 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.194 1.194 20 C 0.094 3.906 21 C -0.068 4.068 22 N -0.159 5.159 23 C -0.144 4.144 24 C -0.149 4.149 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.150 0.850 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.108 -14.057 6.436 17.458 hybrid contribution 0.786 0.937 0.198 1.239 sum -7.322 -13.120 6.634 16.424 Atomic orbital electron populations 1.21786 0.96162 1.01313 1.01811 1.21544 0.95630 0.97340 1.01765 1.21686 0.95788 0.96285 1.02247 1.21645 0.95099 0.96674 1.01737 1.21192 0.95684 0.95298 0.98433 1.21645 1.00300 0.95936 0.97165 1.21305 0.93724 0.95792 1.02721 1.21251 0.97240 0.94918 0.99001 1.20225 0.81288 0.89989 0.83239 1.90526 1.55349 1.48366 1.51241 1.43625 1.12354 1.08699 1.52143 1.19739 1.15888 0.89116 1.18458 0.87744 1.25324 0.98380 0.99503 0.94177 1.69737 1.29942 1.38842 1.14435 0.85814 0.79352 0.81257 0.77667 1.20212 1.21051 1.19428 1.18789 0.99938 0.90795 0.81060 1.29304 0.91627 0.90420 0.95415 1.80843 1.10611 1.11647 1.12839 1.21462 1.00888 0.95106 0.96947 1.21586 0.95085 0.96628 1.01579 0.92831 0.92777 0.93053 0.92196 0.92285 0.92136 0.91679 0.92249 0.92098 0.91185 0.92241 0.91984 0.91009 0.92208 0.90453 0.91673 0.85012 0.90270 0.91393 0.91465 0.92052 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.07 4.97 -26.73 -0.13 -1.20 16 4 C -0.11 -1.05 4.68 -26.73 -0.13 -1.17 16 5 C -0.09 -0.96 2.19 -90.62 -0.20 -1.16 16 6 C -0.11 -1.41 4.96 -26.74 -0.13 -1.54 16 7 C -0.10 -1.58 4.78 -26.73 -0.13 -1.71 16 8 C -0.10 -1.77 1.70 -91.77 -0.16 -1.92 16 9 C 0.46 10.53 6.62 -10.99 -0.07 10.46 16 10 O -0.57 -15.09 15.86 5.55 0.09 -15.00 16 11 N -0.45 -10.52 2.60 -117.94 -0.31 -10.82 16 12 C -0.30 -7.89 9.30 -14.93 -0.14 -8.03 16 13 H 0.10 2.84 7.43 -52.49 -0.39 2.45 16 14 C 0.03 0.71 5.10 -17.47 -0.09 0.62 16 15 N -0.89 -22.56 9.05 55.50 0.50 -22.06 16 16 Si 0.93 20.00 29.57 -169.99 -5.03 14.98 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.22 4.47 4.77 -6.83 -0.03 4.44 16 21 C 0.25 5.65 12.85 -20.79 -0.27 5.38 16 22 N -0.48 -11.59 18.53 42.12 0.78 -10.81 16 23 C -0.11 -1.50 5.05 -26.73 -0.13 -1.63 16 24 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 37 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.31 6.03 -51.93 -0.31 1.00 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.13 2.74 6.36 -51.93 -0.33 2.41 16 42 H 0.08 1.25 5.88 -51.93 -0.31 0.95 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.91 7.43 -51.93 -0.39 0.52 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -29.90 361.37 -7.92 -37.82 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.87 Total: 1.21 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.54 Total: -0.76 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.98 Total: -43.69 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.09 Total: -15.00 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.90 -7.92 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057684063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.763 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds